
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/182308/LUAD.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD/1709124/1.GDAC_clinicalDataPicker.Finished/LUAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=294, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 309 to 279."
[1] 279 172
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            85             87 
  TP53 MUTATED TP53 WILD-TYPE 
            85             87 
[1] "NAV3 MUTATION ANALYSIS"
[1] 3
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
  NAV3 MUTATED NAV3 WILD-TYPE 
            35            137 
[1] "MAGEC1 MUTATION ANALYSIS"
[1] 3
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              24              148 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              24              148 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             33             139 
  CDH10 MUTATED CDH10 WILD-TYPE 
             33             139 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "ZNF676 MUTATION ANALYSIS"
[1] 3
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              16              156 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              159 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              159 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "GABRB3 MUTATION ANALYSIS"
[1] 3
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              11              161 
[1] "OR2L3 MUTATION ANALYSIS"
[1] 3
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             159 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             10             162 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "KRTAP1-5 MUTATION ANALYSIS"
[1] 3
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
[1] "OR2T4 MUTATION ANALYSIS"
[1] 3
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             13             159 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
  REG3A MUTATED REG3A WILD-TYPE 
             14             158 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               8              164 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "OR4A5 MUTATION ANALYSIS"
[1] 3
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             160 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             12             160 
  REG1B MUTATED REG1B WILD-TYPE 
             12             160 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              9             163 
[1] "OR2L8 MUTATION ANALYSIS"
[1] 3
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             160 
[1] "NRG3 MUTATION ANALYSIS"
[1] 3
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
  NRG3 MUTATED NRG3 WILD-TYPE 
            13            159 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              162 
[1] "ZNF804A MUTATION ANALYSIS"
[1] 3
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               30               142 
[1] "MARCH11 MUTATION ANALYSIS"
[1] 3
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                8               164 
[1] "OR2T34 MUTATION ANALYSIS"
[1] 3
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
              10              162 
[1] "C18ORF34 MUTATION ANALYSIS"
[1] 3
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                19                153 
[1] "SERPINB4 MUTATION ANALYSIS"
[1] 3
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                162 
[1] "OR4C15 MUTATION ANALYSIS"
[1] 3
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              13              159 
[1] "ZNF492 MUTATION ANALYSIS"
[1] 3
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               8              164 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "TBX22 MUTATION ANALYSIS"
[1] 3
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
  TBX22 MUTATED TBX22 WILD-TYPE 
             12             160 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              11              161 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "OR5D14 MUTATION ANALYSIS"
[1] 3
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              13              159 
[1] "HEATR7B2 MUTATION ANALYSIS"
[1] 3
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                20                152 
[1] "CARM1 MUTATION ANALYSIS"
[1] 3
  CARM1 MUTATED CARM1 WILD-TYPE 
              3             169 
  CARM1 MUTATED CARM1 WILD-TYPE 
              3             169 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "LRRTM4 MUTATION ANALYSIS"
[1] 3
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              18              154 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "HGF MUTATION ANALYSIS"
[1] 3
  HGF MUTATED HGF WILD-TYPE 
           16           156 
  HGF MUTATED HGF WILD-TYPE 
           16           156 
[1] "OR5W2 MUTATION ANALYSIS"
[1] 3
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             163 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR8H2 MUTATION ANALYSIS"
[1] 3
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
             11             161 
[1] "ZIC4 MUTATION ANALYSIS"
[1] 3
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            13            159 
[1] "DACH1 MUTATION ANALYSIS"
[1] 3
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
  DACH1 MUTATED DACH1 WILD-TYPE 
             11             161 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "PLA2G4E MUTATION ANALYSIS"
[1] 3
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
[1] "LPA MUTATION ANALYSIS"
[1] 3
  LPA MUTATED LPA WILD-TYPE 
           13           159 
  LPA MUTATED LPA WILD-TYPE 
           13           159 
[1] "KCNT2 MUTATION ANALYSIS"
[1] 3
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             17             155 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "C10ORF71 MUTATION ANALYSIS"
[1] 3
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 6                166 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 6                166 
[1] "LRRIQ1 MUTATION ANALYSIS"
[1] 3
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              21              151 
[1] "SEC14L1 MUTATION ANALYSIS"
[1] 3
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                4               168 
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                4               168 
[1] "SPANXN2 MUTATION ANALYSIS"
[1] 3
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                7               165 
[1] "WDR49 MUTATION ANALYSIS"
[1] 3
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
  WDR49 MUTATED WDR49 WILD-TYPE 
              9             163 
[1] "OR52E4 MUTATION ANALYSIS"
[1] 3
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               6              166 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "CXORF59 MUTATION ANALYSIS"
[1] 3
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                8               164 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
              10              162 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            163 
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            163 
[1] "OR5F1 MUTATION ANALYSIS"
[1] 3
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             12             160 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
  INHBA MUTATED INHBA WILD-TYPE 
              9             163 
[1] "EPHB1 MUTATION ANALYSIS"
[1] 3
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             18             154 
[1] "FAM71B MUTATION ANALYSIS"
[1] 3
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              158 
[1] "OR8H3 MUTATION ANALYSIS"
[1] 3
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
             11             161 
[1] "ADAMTS16 MUTATION ANALYSIS"
[1] 3
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                22                150 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "RPL10L MUTATION ANALYSIS"
[1] 3
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
  RPL10L MUTATED RPL10L WILD-TYPE 
               6              166 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
[1] "OR4S2 MUTATION ANALYSIS"
[1] 3
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              6             166 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "PRR21 MUTATION ANALYSIS"
[1] 3
  PRR21 MUTATED PRR21 WILD-TYPE 
              5             167 
  PRR21 MUTATED PRR21 WILD-TYPE 
              5             167 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             25             147 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "OR14I1 MUTATION ANALYSIS"
[1] 3
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              166 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "PDZRN3 MUTATION ANALYSIS"
[1] 3
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
              10              162 
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
              10              162 
[1] "SYT4 MUTATION ANALYSIS"
[1] 3
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
  SYT4 MUTATED SYT4 WILD-TYPE 
            11            161 
[1] "ZSWIM2 MUTATION ANALYSIS"
[1] 3
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              13              159 
[1] "MAGEB18 MUTATION ANALYSIS"
[1] 3
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               167 
[1] "NTNG1 MUTATION ANALYSIS"
[1] 3
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             11             161 
[1] "C7 MUTATION ANALYSIS"
[1] 3
  C7 MUTATED C7 WILD-TYPE 
          14          158 
  C7 MUTATED C7 WILD-TYPE 
          14          158 
[1] "KRTAP15-1 MUTATION ANALYSIS"
[1] 3
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  5                 167 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            14            158 
  SDK1 MUTATED SDK1 WILD-TYPE 
            14            158 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             163 
[1] "SATB2 MUTATION ANALYSIS"
[1] 3
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
  SATB2 MUTATED SATB2 WILD-TYPE 
             15             157 
[1] "ODF1 MUTATION ANALYSIS"
[1] 3
  ODF1 MUTATED ODF1 WILD-TYPE 
             4            168 
  ODF1 MUTATED ODF1 WILD-TYPE 
             4            168 
[1] "CMKLR1 MUTATION ANALYSIS"
[1] 3
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               7              165 
[1] "EPHA7 MUTATION ANALYSIS"
[1] 3
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             11             161 
[1] "OR2T3 MUTATION ANALYSIS"
[1] 3
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              9             163 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              9             163 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "TRIM72 MUTATION ANALYSIS"
[1] 3
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              166 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              166 
[1] "MFAP1 MUTATION ANALYSIS"
[1] 3
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              3             169 
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              3             169 
[1] "OR2W5 MUTATION ANALYSIS"
[1] 3
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             165 
[1] "PI15 MUTATION ANALYSIS"
[1] 3
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
  PI15 MUTATED PI15 WILD-TYPE 
             7            165 
[1] "ARHGAP36 MUTATION ANALYSIS"
[1] 3
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                13                159 
[1] "FABP12 MUTATION ANALYSIS"
[1] 3
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
  FABP12 MUTATED FABP12 WILD-TYPE 
               3              169 
[1] "SEMA3A MUTATION ANALYSIS"
[1] 3
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
              10              162 
[1] "UGT2B10 MUTATION ANALYSIS"
[1] 3
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               161 
[1] "OR10K2 MUTATION ANALYSIS"
[1] 3
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               9              163 
[1] "LIPI MUTATION ANALYSIS"
[1] 3
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
  LIPI MUTATED LIPI WILD-TYPE 
             7            165 
[1] "CLEC12B MUTATION ANALYSIS"
[1] 3
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
[1] "WT1 MUTATION ANALYSIS"
[1] 3
  WT1 MUTATED WT1 WILD-TYPE 
            7           165 
  WT1 MUTATED WT1 WILD-TYPE 
            7           165 
[1] "OR5T2 MUTATION ANALYSIS"
[1] 3
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             164 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               7              165 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "OR5D16 MUTATION ANALYSIS"
[1] 3
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              165 
[1] "SLC35F1 MUTATION ANALYSIS"
[1] 3
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                9               163 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "OR6N2 MUTATION ANALYSIS"
[1] 3
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             165 
[1] "ADAMTS18 MUTATION ANALYSIS"
[1] 3
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                17                155 
[1] "CTNNA2 MUTATION ANALYSIS"
[1] 3
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              20              152 
[1] "VN1R2 MUTATION ANALYSIS"
[1] 3
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              7             165 
[1] "KRTAP11-1 MUTATION ANALYSIS"
[1] 3
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  6                 166 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               11               161 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               12               160 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "KCNS2 MUTATION ANALYSIS"
[1] 3
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              7             165 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
[1] "ANKRD7 MUTATION ANALYSIS"
[1] 3
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              166 
[1] "C7ORF58 MUTATION ANALYSIS"
[1] 3
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               17               155 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             5            167 
  MTTP MUTATED MTTP WILD-TYPE 
             5            167 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             162 
[1] "C1ORF129 MUTATION ANALYSIS"
[1] 3
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
                 8                164 
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
                 8                164 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "C14ORF177 MUTATION ANALYSIS"
[1] 3
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 167 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
  PSG6 MUTATED PSG6 WILD-TYPE 
            11            161 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               8              164 
[1] "ANKRD56 MUTATION ANALYSIS"
[1] 3
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
[1] "NTRK1 MUTATION ANALYSIS"
[1] 3
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
[1] "IRX1 MUTATION ANALYSIS"
[1] 3
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
  IRX1 MUTATED IRX1 WILD-TYPE 
             7            165 
[1] "APCS MUTATION ANALYSIS"
[1] 3
  APCS MUTATED APCS WILD-TYPE 
             4            168 
  APCS MUTATED APCS WILD-TYPE 
             4            168 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
  BCHE MUTATED BCHE WILD-TYPE 
             9            163 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "DOCK3 MUTATION ANALYSIS"
[1] 3
  DOCK3 MUTATED DOCK3 WILD-TYPE 
              5             167 
  DOCK3 MUTATED DOCK3 WILD-TYPE 
              5             167 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              11              161 
[1] "LCE1F MUTATION ANALYSIS"
[1] 3
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
  LCE1F MUTATED LCE1F WILD-TYPE 
              4             168 
[1] "RIT2 MUTATION ANALYSIS"
[1] 3
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            169 
[1] "FOXI1 MUTATION ANALYSIS"
[1] 3
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              8             164 
[1] "TBX5 MUTATION ANALYSIS"
[1] 3
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
  TBX5 MUTATED TBX5 WILD-TYPE 
            11            161 
[1] "NPFFR2 MUTATION ANALYSIS"
[1] 3
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
              10              162 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "ESYT2 MUTATION ANALYSIS"
[1] 3
  ESYT2 MUTATED ESYT2 WILD-TYPE 
              7             165 
  ESYT2 MUTATED ESYT2 WILD-TYPE 
              7             165 
[1] "FGF14 MUTATION ANALYSIS"
[1] 3
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
  FGF14 MUTATED FGF14 WILD-TYPE 
              7             165 
[1] "C2ORF51 MUTATION ANALYSIS"
[1] 3
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                5               167 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              23              149 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              23              149 
[1] "GPR101 MUTATION ANALYSIS"
[1] 3
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
  GPR101 MUTATED GPR101 WILD-TYPE 
               9              163 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             21             151 
  CDH18 MUTATED CDH18 WILD-TYPE 
             21             151 
[1] "GC MUTATION ANALYSIS"
[1] 3
  GC MUTATED GC WILD-TYPE 
           5          167 
  GC MUTATED GC WILD-TYPE 
           5          167 
[1] "OR4D10 MUTATION ANALYSIS"
[1] 3
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               5              167 
[1] "TBX3 MUTATION ANALYSIS"
[1] 3
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            165 
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            165 
[1] "CYLC1 MUTATION ANALYSIS"
[1] 3
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             166 
[1] "FAM47B MUTATION ANALYSIS"
[1] 3
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
  FAM47B MUTATED FAM47B WILD-TYPE 
              14              158 
[1] "OR4L1 MUTATION ANALYSIS"
[1] 3
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              7             165 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "TGFB2 MUTATION ANALYSIS"
[1] 3
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             166 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               8              164 
[1] "TUBB4Q MUTATION ANALYSIS"
[1] 3
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               9              163 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               9              163 
[1] "BIRC8 MUTATION ANALYSIS"
[1] 3
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              6             166 
[1] "OR10T2 MUTATION ANALYSIS"
[1] 3
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              165 
[1] "OR51I1 MUTATION ANALYSIS"
[1] 3
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              166 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              167 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              167 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "CACNA2D3 MUTATION ANALYSIS"
[1] 3
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
                11                161 
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
                11                161 
[1] "OR51A7 MUTATION ANALYSIS"
[1] 3
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               7              165 
[1] "TMEFF1 MUTATION ANALYSIS"
[1] 3
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               4              168 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               4              168 
[1] "SLITRK2 MUTATION ANALYSIS"
[1] 3
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               19               153 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "OR5D13 MUTATION ANALYSIS"
[1] 3
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              168 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "C1ORF94 MUTATION ANALYSIS"
[1] 3
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
                8               164 
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
                8               164 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8              164 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8              164 
[1] "HOXB3 MUTATION ANALYSIS"
[1] 3
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
             10             162 
[1] "CYP2C19 MUTATION ANALYSIS"
[1] 3
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               165 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               165 
[1] "RBM19 MUTATION ANALYSIS"
[1] 3
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
  RBM19 MUTATED RBM19 WILD-TYPE 
             14             158 
[1] "OR5K3 MUTATION ANALYSIS"
[1] 3
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             165 
[1] "SAMD7 MUTATION ANALYSIS"
[1] 3
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              6             166 
[1] "RALYL MUTATION ANALYSIS"
[1] 3
  RALYL MUTATED RALYL WILD-TYPE 
              5             167 
  RALYL MUTATED RALYL WILD-TYPE 
              5             167 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             164 
[1] "TYR MUTATION ANALYSIS"
[1] 3
  TYR MUTATED TYR WILD-TYPE 
           10           162 
  TYR MUTATED TYR WILD-TYPE 
           10           162 
[1] "STX2 MUTATION ANALYSIS"
[1] 3
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
[1] "CHM MUTATION ANALYSIS"
[1] 3
  CHM MUTATED CHM WILD-TYPE 
            6           166 
  CHM MUTATED CHM WILD-TYPE 
            6           166 
[1] "DIO2 MUTATION ANALYSIS"
[1] 3
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            166 
[1] "NELL1 MUTATION ANALYSIS"
[1] 3
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
  NELL1 MUTATED NELL1 WILD-TYPE 
             14             158 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             161 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             161 
[1] "TMEM185A MUTATION ANALYSIS"
[1] 3
  TMEM185A MUTATED TMEM185A WILD-TYPE 
                 3                169 
  TMEM185A MUTATED TMEM185A WILD-TYPE 
                 3                169 
[1] "GSG1L MUTATION ANALYSIS"
[1] 3
  GSG1L MUTATED GSG1L WILD-TYPE 
              4             168 
  GSG1L MUTATED GSG1L WILD-TYPE 
              4             168 
[1] "NOVA1 MUTATION ANALYSIS"
[1] 3
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             10             162 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
             10             162 
[1] "PDE10A MUTATION ANALYSIS"
[1] 3
  PDE10A MUTATED PDE10A WILD-TYPE 
              12              160 
  PDE10A MUTATED PDE10A WILD-TYPE 
              12              160 
[1] "GLIPR1 MUTATION ANALYSIS"
[1] 3
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               6              166 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               6              166 
[1] "GNG2 MUTATION ANALYSIS"
[1] 3
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
[1] "PIP MUTATION ANALYSIS"
[1] 3
  PIP MUTATED PIP WILD-TYPE 
            5           167 
  PIP MUTATED PIP WILD-TYPE 
            5           167 
[1] "SLC10A2 MUTATION ANALYSIS"
[1] 3
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               165 
[1] "OR5B3 MUTATION ANALYSIS"
[1] 3
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             165 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             165 
[1] "MAGEL2 MUTATION ANALYSIS"
[1] 3
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
               8              164 
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
               8              164 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             159 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             159 
[1] "SLITRK4 MUTATION ANALYSIS"
[1] 3
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               15               157 
[1] "DBX2 MUTATION ANALYSIS"
[1] 3
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            168 
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            168 
[1] "ATXN3L MUTATION ANALYSIS"
[1] 3
  ATXN3L MUTATED ATXN3L WILD-TYPE 
               3              169 
  ATXN3L MUTATED ATXN3L WILD-TYPE 
               3              169 
[1] "FRG1 MUTATION ANALYSIS"
[1] 3
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            166 
[1] "MAGEE2 MUTATION ANALYSIS"
[1] 3
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               6              166 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               6              166 
[1] "NLGN1 MUTATION ANALYSIS"
[1] 3
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             15             157 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             15             157 
[1] "USF2 MUTATION ANALYSIS"
[1] 3
  USF2 MUTATED USF2 WILD-TYPE 
             3            169 
  USF2 MUTATED USF2 WILD-TYPE 
             3            169 
[1] "CTRC MUTATION ANALYSIS"
[1] 3
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
[1] "ASCL3 MUTATION ANALYSIS"
[1] 3
  ASCL3 MUTATED ASCL3 WILD-TYPE 
              3             169 
  ASCL3 MUTATED ASCL3 WILD-TYPE 
              3             169 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
[1] "RUFY2 MUTATION ANALYSIS"
[1] 3
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
[1] "OR2L2 MUTATION ANALYSIS"
[1] 3
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              9             163 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              9             163 
[1] "OR5M10 MUTATION ANALYSIS"
[1] 3
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              166 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              166 
[1] "PROS1 MUTATION ANALYSIS"
[1] 3
  PROS1 MUTATED PROS1 WILD-TYPE 
             10             162 
  PROS1 MUTATED PROS1 WILD-TYPE 
             10             162 
[1] "GTF2I MUTATION ANALYSIS"
[1] 3
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
[1] "FAM5B MUTATION ANALYSIS"
[1] 3
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             158 
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             158 
[1] "KRT71 MUTATION ANALYSIS"
[1] 3
  KRT71 MUTATED KRT71 WILD-TYPE 
              4             168 
  KRT71 MUTATED KRT71 WILD-TYPE 
              4             168 
[1] "P2RX7 MUTATION ANALYSIS"
[1] 3
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
[1] "CRNN MUTATION ANALYSIS"
[1] 3
  CRNN MUTATED CRNN WILD-TYPE 
             9            163 
  CRNN MUTATED CRNN WILD-TYPE 
             9            163 
[1] "POT1 MUTATION ANALYSIS"
[1] 3
  POT1 MUTATED POT1 WILD-TYPE 
             8            164 
  POT1 MUTATED POT1 WILD-TYPE 
             8            164 
[1] "SERPINB5 MUTATION ANALYSIS"
[1] 3
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 3                169 
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 3                169 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             16             156 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             16             156 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             167 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             167 
[1] "OR10A2 MUTATION ANALYSIS"
[1] 3
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               7              165 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               7              165 
[1] "ARPP21 MUTATION ANALYSIS"
[1] 3
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              15              157 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              15              157 
[1] "BLID MUTATION ANALYSIS"
[1] 3
  BLID MUTATED BLID WILD-TYPE 
             4            168 
  BLID MUTATED BLID WILD-TYPE 
             4            168 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
           11           161 
  FGB MUTATED FGB WILD-TYPE 
           11           161 
[1] "TCTEX1D1 MUTATION ANALYSIS"
[1] 3
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                167 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                167 
[1] "KDM4DL MUTATION ANALYSIS"
[1] 3
  KDM4DL MUTATED KDM4DL WILD-TYPE 
               3              169 
  KDM4DL MUTATED KDM4DL WILD-TYPE 
               3              169 
[1] "FCRL1 MUTATION ANALYSIS"
[1] 3
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             166 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             166 
[1] "SERPINB7 MUTATION ANALYSIS"
[1] 3
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                166 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                166 
[1] "SULT1B1 MUTATION ANALYSIS"
[1] 3
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               165 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               165 
[1] "CKAP2L MUTATION ANALYSIS"
[1] 3
  CKAP2L MUTATED CKAP2L WILD-TYPE 
               6              166 
  CKAP2L MUTATED CKAP2L WILD-TYPE 
               6              166 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10             162 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10             162 
[1] "CMA1 MUTATION ANALYSIS"
[1] 3
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
[1] "DCLK3 MUTATION ANALYSIS"
[1] 3
  DCLK3 MUTATED DCLK3 WILD-TYPE 
             10             162 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
             10             162 
[1] "OR6K6 MUTATION ANALYSIS"
[1] 3
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             164 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             164 
[1] "SGIP1 MUTATION ANALYSIS"
[1] 3
  SGIP1 MUTATED SGIP1 WILD-TYPE 
             11             161 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
             11             161 
[1] "GUCA1C MUTATION ANALYSIS"
[1] 3
  GUCA1C MUTATED GUCA1C WILD-TYPE 
               3              169 
  GUCA1C MUTATED GUCA1C WILD-TYPE 
               3              169 
[1] "HAX1 MUTATION ANALYSIS"
[1] 3
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            10            162 
  ZBBX MUTATED ZBBX WILD-TYPE 
            10            162 
[1] "PPAN-P2RY11 MUTATION ANALYSIS"
[1] 3
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                    4                   168 
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                    4                   168 
[1] "OR4C12 MUTATION ANALYSIS"
[1] 3
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               5              167 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               5              167 
[1] "TAAR2 MUTATION ANALYSIS"
[1] 3
  TAAR2 MUTATED TAAR2 WILD-TYPE 
              5             167 
  TAAR2 MUTATED TAAR2 WILD-TYPE 
              5             167 
[1] "OR10AG1 MUTATION ANALYSIS"
[1] 3
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               166 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               166 
[1] "RERGL MUTATION ANALYSIS"
[1] 3
  RERGL MUTATED RERGL WILD-TYPE 
              5             167 
  RERGL MUTATED RERGL WILD-TYPE 
              5             167 
[1] "ZNF711 MUTATION ANALYSIS"
[1] 3
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               6              166 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               6              166 
[1] "GTDC1 MUTATION ANALYSIS"
[1] 3
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              7             165 
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              7             165 
[1] "KIR2DS4 MUTATION ANALYSIS"
[1] 3
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
                4               168 
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
                4               168 
[1] "KRTAP8-1 MUTATION ANALYSIS"
[1] 3
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                169 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                169 
[1] "OLFM3 MUTATION ANALYSIS"
[1] 3
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             165 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             165 
[1] "SERPINI2 MUTATION ANALYSIS"
[1] 3
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
                 7                165 
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
                 7                165 
[1] "TUBA3C MUTATION ANALYSIS"
[1] 3
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              165 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              165 
[1] "GALNT13 MUTATION ANALYSIS"
[1] 3
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               165 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               165 
[1] "MPPED2 MUTATION ANALYSIS"
[1] 3
  MPPED2 MUTATED MPPED2 WILD-TYPE 
               4              168 
  MPPED2 MUTATED MPPED2 WILD-TYPE 
               4              168 
[1] "OR5H1 MUTATION ANALYSIS"
[1] 3
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              4             168 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              4             168 
[1] "HSD3B2 MUTATION ANALYSIS"
[1] 3
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
               8              164 
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
               8              164 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 172 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
         863         1073          354         1357          158          574 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
         581          400          529          103          480          400 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
          97          246          311          253          196          189 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
         140          106          208            9          102          302 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
         236           95          165           82         1938           NA 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1110           NA         2318           NA           NA           NA 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
        1081         1421          428          999          268          896 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
          NA         1314          457          369          395          150 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         1485          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         297         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653          257          460          285          135 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         373          349           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
          NA           NA         1015          701         1178         1479 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
        1374           87            2          992           24         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
         628         1189         1126         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
          61         1599          711          911          617          467 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 
          14           40          122           38           NA           NA 
TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-80-5611 TCGA-86-6562 TCGA-91-6828 
          NA           NA           NA           NA           NA           37 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
          NA           39           35           11 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=122,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=71,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
88 33 39  9 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 172 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 41 108  14   8 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 41 108  14   8 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 41 108  14   8 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
95 37 34  1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
   95    37    35 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
95 37 34  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
   95    37    35 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 88  33  39   9 
[1] "table(vv)"
vv
  I  II III  IV 
 88  33  39   9 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 88  33  39   9 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 88  33  39   9 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = KRTAP5-5 MUTATION ANALYSIS
D1V1, survival
                    sevent
clus2                 0  1
  KRTAP5-5 MUTATED    7  9
  KRTAP5-5 WILD-TYPE 92 41
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                16                133 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 9                 41 
$`KRTAP5-5 MUTATED`
TCGA-05-4396 TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6148 TCGA-49-4494 
        9.96        49.02        19.10         8.09         3.12        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-50-5933 TCGA-50-5944 TCGA-50-6591 TCGA-50-6593 
       46.72        32.84        77.88        12.26         3.88        11.05 
TCGA-55-1592 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 
       23.05        30.44         7.33         2.04 

$`KRTAP5-5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4505 
       16.41        76.21        28.11        28.57        12.66        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47        42.31        25.51        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        16.67        39.52         0.99         1.97         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
              2.04               0.07 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             77.88              85.32 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             15.68              13.87 
[1] "2.0 - 77.9 (15.7)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
[1] "hr=" "1.4"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      9   12
  KRTAP5-5 WILD-TYPE   84   67
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                9                 84
  MALE                 12                 67
D1V4, continuous
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-71-6725         TCGA-73-4659 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
D1V5, multiclass
D1V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                4                 37
  T2               13                 95
  T3                2                 12
  T4                2                  6
D1V7, multiclass
       clus
vv      KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                  12                 83
  N1                   6                 31
  N2+N3                3                 32
D1V8, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0               19                118
  M1                1                  8
  MX                1                 21
D1V9, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  I                 11                 77
  II                 5                 28
  III                4                 35
  IV                 1                  8
D1V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      1   20
  KRTAP5-5 WILD-TYPE   15  136
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  NO                 1                 15
  YES               20                136
D1V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2   19
  KRTAP5-5 WILD-TYPE   26  125
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  NO                 2                 26
  YES               19                125

Clustering(2) Variable = STK11 MUTATION ANALYSIS
D2V1, survival
                 sevent
clus2              0  1
  STK11 MUTATED    9  8
  STK11 WILD-TYPE 90 42
  STK11 MUTATED STK11 WILD-TYPE 
             17             132 
  STK11 MUTATED STK11 WILD-TYPE 
              8              42 
$`STK11 MUTATED`
TCGA-05-4415 TCGA-05-4417 TCGA-05-4432 TCGA-35-3615 TCGA-44-6144 TCGA-44-6776 
        2.96        14.93        25.02         0.46         0.30        63.72 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4507 TCGA-50-5072 TCGA-50-5932 
       16.41        76.21        28.11         8.81         8.05        35.87 
TCGA-50-5939 TCGA-55-1596 TCGA-67-3774 TCGA-73-4670 TCGA-73-4677 
       15.12        45.17         0.59         0.46         1.25 

$`STK11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        20.05         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        1.02         4.96         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-49-4488 
        3.12         5.42         2.70        32.45        36.49        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        20.28        15.35         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  STK11 MUTATED STK11 WILD-TYPE 
           0.30            0.07 
  STK11 MUTATED STK11 WILD-TYPE 
          76.21           85.32 
  STK11 MUTATED STK11 WILD-TYPE 
          14.93           13.51 
[1] "0.3 - 76.2 (14.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6836 
"STK11 WILD-TYPE" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      7   13
  STK11 WILD-TYPE   86   66
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  FEMALE             7              86
  MALE              13              66
D2V4, continuous
D2V5, multiclass
D2V6, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  T1             4              37
  T2            13              95
  T3             1              13
  T4             2               6
D2V7, multiclass
       clus
vv      STK11 MUTATED STK11 WILD-TYPE
  N0               12              83
  N1                5              32
  N2+N3             3              32
D2V8, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  M0            17             120
  M1             1               8
  MX             2              20
D2V9, multiclass
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  I              11              77
  II              4              29
  III             4              35
  IV              1               8
D2V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   14  138
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              14
  YES            18             138
D2V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   26  126
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              26
  YES            18             126

Clustering(3) Variable = ASTN2 MUTATION ANALYSIS
D3V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    7  6
  ASTN2 WILD-TYPE 92 44
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             13             136 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              6              44 
$`ASTN2 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-38-4625 TCGA-38-4631 
       38.07         9.96        24.03        26.01        47.61        11.64 
TCGA-49-4487 TCGA-50-6593 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-73-4670 
       28.11        11.05        30.44        16.67        39.52         0.46 
TCGA-91-6829 
       41.33 

$`ASTN2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           0.46            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          47.61           85.32 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          26.01           13.07 
[1] "0.5 - 47.6 (26.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-91-6836 
"ASTN2 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      9    6
  ASTN2 WILD-TYPE   84   73
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D3V4, continuous
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
D3V5, multiclass
D3V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             2              39
  T2            12              96
  T3             0              14
  T4             1               7
D3V7, multiclass
       clus
vv      ASTN2 MUTATED ASTN2 WILD-TYPE
  N0               10              85
  N1                3              34
  N2+N3             2              33
D3V8, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            12             125
  M1             2               7
  MX             1              21
D3V9, multiclass
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  I               8              80
  II              2              31
  III             3              36
  IV              2               7
D3V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      0   15
  ASTN2 WILD-TYPE   16  141
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              0              16
  YES            15             141
D3V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      2   13
  ASTN2 WILD-TYPE   26  131
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              2              26
  YES            13             131

Clustering(4) Variable = CDKN2A MUTATION ANALYSIS
D4V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    6  2
  CDKN2A WILD-TYPE 93 48
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              141 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               48 
$`CDKN2A MUTATED`
TCGA-05-4426 TCGA-05-4433 TCGA-38-4625 TCGA-44-5645 TCGA-49-4505 TCGA-50-6595 
       26.01        24.00        47.61         6.84        14.07         6.21 
TCGA-55-1594 TCGA-67-3771 
       38.73         1.97 

$`CDKN2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       42.31         3.88        25.51        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            1.97             0.07 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           47.61            85.32 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
          19.035           13.150 
[1] "2.0 - 47.6 (19.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6836 
"CDKN2A WILD-TYPE" 
[1] "hr=" "1.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      5    3
  CDKN2A WILD-TYPE   88   76
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D4V4, continuous
D4V5, multiclass
D4V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              1               40
  T2              6              102
  T3              0               14
  T4              0                8
D4V7, multiclass
       clus
vv      CDKN2A MUTATED CDKN2A WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              2               33
D4V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D4V9, multiclass
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  I                5               83
  II               1               32
  III              2               37
  IV               0                9
D4V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   16  148
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               16
  YES              8              148
D4V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   28  136
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               28
  YES              8              136

Clustering(5) Variable = EGFR MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  EGFR MUTATED    9 10
  EGFR WILD-TYPE 90 40
  EGFR MUTATED EGFR WILD-TYPE 
            19            130 
  EGFR MUTATED EGFR WILD-TYPE 
            10             40 
$`EGFR MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 
       19.92         9.96         8.02         4.96        37.71        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-6147 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       28.37         5.19         7.76        12.66        35.54        46.72 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6595 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       12.26         3.88         6.21         0.99         0.59        13.87 
TCGA-91-6835 
        1.15 

$`EGFR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4631 
        5.95         8.68        47.61        85.32        35.28        11.64 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       15.12         9.37         4.44        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       16.67        39.52         7.33         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        1.22        41.33         1.28         0.36 

  EGFR MUTATED EGFR WILD-TYPE 
          0.59           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         49.02          85.32 
  EGFR MUTATED EGFR WILD-TYPE 
         9.960         14.945 
[1] "0.6 - 49.0 (10.0)" "0.1 - 85.3 (14.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-91-6836 
"EGFR WILD-TYPE" 
[1] "hr=" "2.3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     15    7
  EGFR WILD-TYPE   78   72
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           15             78
  MALE              7             72
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  T1            5             36
  T2           13             95
  T3            3             11
  T4            1              7
D5V7, multiclass
       clus
vv      EGFR MUTATED EGFR WILD-TYPE
  N0               9             86
  N1               6             31
  N2+N3            5             30
D5V8, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  M0           17            120
  M1            2              7
  MX            2             20
D5V9, multiclass
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  I              8             80
  II             6             27
  III            6             33
  IV             2              7
D5V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      1   21
  EGFR WILD-TYPE   15  135
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             1             15
  YES           21            135
D5V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      3   19
  EGFR WILD-TYPE   25  125
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             3             25
  YES           19            125

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   17 11
  KEAP1 WILD-TYPE 82 39
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             28             121 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             11              39 
$`KEAP1 MUTATED`
TCGA-05-4384 TCGA-05-4418 TCGA-35-3615 TCGA-35-5375 TCGA-38-4631 TCGA-44-2655 
       14.01         8.98         0.46         8.68        11.64        18.87 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4506 
       63.72        36.49        16.41        76.21        28.57        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 TCGA-50-5068 
        8.81        43.20        15.02        12.13        14.96        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 TCGA-67-3774 
        8.45        15.12         2.86        39.52         1.97         0.59 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       20.28         0.46         4.01         1.25 

$`KEAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        44.61         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
        5.42         2.70        32.45        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 
       46.72        14.07        29.46        29.75        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       20.48        71.47        48.82        25.81         9.76         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 
        9.27         8.78        35.87        77.88        21.47         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       16.67         7.33         0.99         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.46            0.07 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          76.21           85.32 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
         14.485          13.150 
[1] "0.5 - 76.2 (14.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6836 
"KEAP1 WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED     17   15
  KEAP1 WILD-TYPE   76   64
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1            11              30
  T2            18              90
  T3             2              12
  T4             1               7
D6V7, multiclass
       clus
vv      KEAP1 MUTATED KEAP1 WILD-TYPE
  N0               18              77
  N1                7              30
  N2+N3             7              28
D6V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            23             114
  M1             2               7
  MX             7              15
D6V9, multiclass
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  I              17              71
  II              5              28
  III             8              31
  IV              2               7
D6V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      4   28
  KEAP1 WILD-TYPE   12  128
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              4              12
  YES            28             128
D6V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      6   26
  KEAP1 WILD-TYPE   22  118
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              6              22
  YES            26             118

Clustering(7) Variable = KRAS MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   28 13
  KRAS WILD-TYPE 71 37
  KRAS MUTATED KRAS WILD-TYPE 
            41            108 
  KRAS MUTATED KRAS WILD-TYPE 
            13             37 
$`KRAS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       38.07         3.98        37.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-35-3615 TCGA-38-4626 
        8.98        26.01        25.02        24.00         0.46        85.32 
TCGA-44-2668 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 TCGA-44-6777 
        8.09         0.30         3.35         9.93        63.72        32.45 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-50-5933 
       14.07        29.46        12.99        14.96        35.87        77.88 
TCGA-50-5936 TCGA-50-5941 TCGA-55-1595 TCGA-55-6642 TCGA-64-1677 TCGA-64-5774 
        8.45         9.37        48.62        32.61        20.65        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 TCGA-73-4659 
        0.10        30.44         7.33         2.04         0.59        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-91-6828 TCGA-91-6836 
       29.95         0.46         1.25         1.22         0.36 

$`KRAS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       29.95        30.02        26.01        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        4.96         2.96         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5939 
       49.28         8.05         9.27         8.78        21.47        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
       45.17         2.86         0.07         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       37.02        16.67        39.52         0.99         1.97         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 
        0.89         0.69        13.87         2.01        52.57        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       15.35         1.32         4.01        41.33         1.28         1.15 

  KRAS MUTATED KRAS WILD-TYPE 
          0.10           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
         85.32          76.21 
  KRAS MUTATED KRAS WILD-TYPE 
         14.93          13.15 
[1] "0.1 - 85.3 (14.9)" "0.1 - 76.2 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-91-6836 
  "KRAS MUTATED" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     23   24
  KRAS WILD-TYPE   70   55
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           23             70
  MALE             24             55
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6             35
  T2           32             76
  T3            5              9
  T4            4              4
D7V7, multiclass
       clus
vv      KRAS MUTATED KRAS WILD-TYPE
  N0              28             67
  N1               7             30
  N2+N3           11             24
D7V8, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           39             98
  M1            2              7
  MX            6             16
D7V9, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             25             63
  II             8             25
  III           12             27
  IV             2              7
D7V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      4   43
  KRAS WILD-TYPE   12  113
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             4             12
  YES           43            113
D7V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      5   42
  KRAS WILD-TYPE   23  102
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             5             23
  YES           42            102

Clustering(8) Variable = TP53 MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   49 27
  TP53 WILD-TYPE 50 23
  TP53 MUTATED TP53 WILD-TYPE 
            76             73 
  TP53 MUTATED TP53 WILD-TYPE 
            27             23 
$`TP53 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       20.05        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       25.02        24.00         4.96         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2659 
       47.61        28.37        35.28        44.61         5.19        17.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-5643 
       15.78         3.19         8.09        10.22         6.44         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
        6.84         0.30         3.35         7.76         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4490 TCGA-49-4505 
       32.45        36.49        16.41        28.11        12.66        14.07 
TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5931 
       43.20        71.47        48.82         9.76        49.28         8.78 
TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       77.88        15.12         9.37        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 
        3.88        25.51        11.05        12.16         6.21        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
       38.73        45.17         2.86         0.79        20.65        39.09 
TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 TCGA-67-3771 TCGA-73-4666 TCGA-73-4670 
        0.10        30.44         0.99         1.97        20.28         0.46 
TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        4.01        41.33         1.28         0.36 

$`TP53 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       38.07         3.98        37.02         2.96        14.93         8.98 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 TCGA-44-2655 TCGA-44-2656 
       85.32        37.71        49.02        11.64        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.39        13.15         8.32         6.21         4.60 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 
        9.93         3.12        63.72        76.21        28.57        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       46.72        32.84         8.81        29.46        29.75        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 
       12.13        12.99         4.93        20.48        14.96        25.81 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.05         9.27        35.87        21.47         8.45         4.44 
TCGA-50-6597 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1680 
       33.37        48.62         0.07        32.61        56.81        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 
       83.84        16.67        39.52         7.33         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       23.38        29.95        15.35         1.32         1.25         1.22 
TCGA-91-6835 
        1.15 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         77.88          85.32 
  TP53 MUTATED TP53 WILD-TYPE 
         14.04          13.15 
[1] "0.1 - 77.9 (14.0)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-91-6836 
  "TP53 MUTATED" 
[1] "hr=" "1.3"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     43   42
  TP53 WILD-TYPE   50   37
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           43             50
  MALE             42             37
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           19             22
  T2           55             53
  T3            5              9
  T4            5              3
D8V7, multiclass
       clus
vv      TP53 MUTATED TP53 WILD-TYPE
  N0              47             48
  N1              17             20
  N2+N3           17             18
D8V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           65             72
  M1            5              4
  MX           12             10
D8V9, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             44             44
  II            16             17
  III           19             20
  IV             5              4
D8V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      8   77
  TP53 WILD-TYPE    8   79
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             8              8
  YES           77             79
D8V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     10   75
  TP53 WILD-TYPE   18   69
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO            10             18
  YES           75             69

Clustering(9) Variable = NAV3 MUTATION ANALYSIS
D9V1, survival
                sevent
clus2             0  1
  NAV3 MUTATED   22 11
  NAV3 WILD-TYPE 77 39
  NAV3 MUTATED NAV3 WILD-TYPE 
            33            116 
  NAV3 MUTATED NAV3 WILD-TYPE 
            11             39 
$`NAV3 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       19.92        14.01        37.02         9.96        47.05         2.96 
TCGA-05-4432 TCGA-35-4122 TCGA-38-4631 TCGA-38-4632 TCGA-44-2662 TCGA-44-3918 
       25.02         7.36        11.64        44.61        15.78         6.44 
TCGA-44-6774 TCGA-49-4488 TCGA-49-4505 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        5.42        28.57        14.07        43.20        12.13        12.99 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5068 TCGA-50-5939 TCGA-50-5941 TCGA-55-5899 
       71.47        48.82        49.28        15.12         9.37         2.86 
TCGA-64-1677 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-6217 TCGA-73-4659 
       20.65        39.52         1.97         2.04        13.87        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-91-6836 
       20.28        15.35         0.36 

$`NAV3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 
       38.07         3.98        24.03         8.02        20.05        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 
       29.46        29.75        15.02         4.93        20.48        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       77.88        21.47         8.45         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        30.44        16.67         7.33         0.99         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.59         0.89         0.69         2.01        52.57        29.95 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  NAV3 MUTATED NAV3 WILD-TYPE 
          0.36           0.07 
  NAV3 MUTATED NAV3 WILD-TYPE 
         71.47          85.32 
  NAV3 MUTATED NAV3 WILD-TYPE 
         15.12          12.46 
[1] "0.4 - 71.5 (15.1)" "0.1 - 85.3 (12.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "NAV3 MUTATED"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE"   "NAV3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NAV3 WILD-TYPE"   "NAV3 MUTATED" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "NAV3 MUTATED" "NAV3 WILD-TYPE"   "NAV3 MUTATED"   "NAV3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" "NAV3 WILD-TYPE" 
    TCGA-91-6836 
  "NAV3 MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED     22   13
  NAV3 WILD-TYPE   71   66
        clus
vv       NAV3 MUTATED NAV3 WILD-TYPE
  FEMALE           22             71
  MALE             13             66
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  T1           10             31
  T2           21             87
  T3            1             13
  T4            3              5
D9V7, multiclass
       clus
vv      NAV3 MUTATED NAV3 WILD-TYPE
  N0              17             78
  N1              10             27
  N2+N3            8             27
D9V8, multiclass
    clus
vv   NAV3 MUTATED NAV3 WILD-TYPE
  M0           27            110
  M1            2              7
  MX            6             16
D9V9, multiclass
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  I             17             71
  II             7             26
  III            9             30
  IV             2              7
D9V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED      3   32
  NAV3 WILD-TYPE   13  124
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  NO             3             13
  YES           32            124
D9V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NAV3 MUTATED      5   30
  NAV3 WILD-TYPE   23  114
     clus
vv    NAV3 MUTATED NAV3 WILD-TYPE
  NO             5             23
  YES           30            114

Clustering(10) Variable = MAGEC1 MUTATION ANALYSIS
D10V1, survival
                  sevent
clus2               0  1
  MAGEC1 MUTATED   12  8
  MAGEC1 WILD-TYPE 87 42
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
              20              129 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               8               42 
$`MAGEC1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-38-4626 
       19.92         9.96        26.01        25.02        25.02        85.32 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-50-5051 TCGA-50-5932 
       11.64        44.61        19.10        17.39        14.96        35.87 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-64-1677 TCGA-64-5778 
        9.37        42.31        11.05        12.16        20.65        30.44 
TCGA-64-5815 TCGA-67-6217 
        7.33        13.87 

$`MAGEC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       30.02        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84         0.10        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
            7.33             0.07 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           85.32            83.84 
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
           19.51            12.66 
[1] "7.3 - 85.3 (19.5)" "0.1 - 83.8 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
  "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "MAGEC1 MUTATED"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC1 WILD-TYPE"   "MAGEC1 MUTATED" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC1 WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
D10V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED     13   11
  MAGEC1 WILD-TYPE   80   68
        clus
vv       MAGEC1 MUTATED MAGEC1 WILD-TYPE
  FEMALE             13               80
  MALE               11               68
D10V4, continuous
[1] "Remove cluster labels:" "MAGEC1 MUTATED"        
clus
  MAGEC1 MUTATED MAGEC1 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-71-6725 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"MAGEC1 WILD-TYPE" "MAGEC1 WILD-TYPE" 
D10V5, multiclass
D10V6, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  T1              3               38
  T2             18               90
  T3              2               12
  T4              1                7
D10V7, multiclass
       clus
vv      MAGEC1 MUTATED MAGEC1 WILD-TYPE
  N0                 9               86
  N1                 8               29
  N2+N3              7               28
D10V8, multiclass
    clus
vv   MAGEC1 MUTATED MAGEC1 WILD-TYPE
  M0             23              114
  M1              1                8
  MX              0               22
D10V9, multiclass
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  I                8               80
  II               7               26
  III              8               31
  IV               1                8
D10V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      1   23
  MAGEC1 WILD-TYPE   15  133
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  NO               1               15
  YES             23              133
D10V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC1 MUTATED      2   22
  MAGEC1 WILD-TYPE   26  122
     clus
vv    MAGEC1 MUTATED MAGEC1 WILD-TYPE
  NO               2               26
  YES             22              122

Clustering(11) Variable = CDH10 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED   23  8
  CDH10 WILD-TYPE 76 42
  CDH10 MUTATED CDH10 WILD-TYPE 
             31             118 
  CDH10 MUTATED CDH10 WILD-TYPE 
              8              42 
$`CDH10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 
       19.92         9.96        47.05        20.05         2.96        30.02 
TCGA-05-4427 TCGA-35-3615 TCGA-44-2657 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       26.01         0.46        13.15         8.09         8.32         6.44 
TCGA-44-6145 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-50-5045 TCGA-50-5049 
        3.35        29.75        43.20        12.13        71.47        48.82 
TCGA-50-5068 TCGA-50-5942 TCGA-50-6590 TCGA-50-6593 TCGA-64-5774 TCGA-64-5778 
       49.28         4.44        42.31        11.05        83.84        30.44 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-73-4658 TCGA-91-6828 TCGA-91-6831 
       39.52         0.99         1.97        52.57         1.22         1.28 
TCGA-91-6835 
        1.15 

$`CDH10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       14.93         8.98        29.95        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       32.84         8.81        29.46        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 
       20.48        14.96        25.81         9.76         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        9.37        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 
       39.09        37.02         0.10        16.67         7.33         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6836 
        4.01         1.25        41.33         0.36 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.46            0.07 
  CDH10 MUTATED CDH10 WILD-TYPE 
          83.84           85.32 
  CDH10 MUTATED CDH10 WILD-TYPE 
          13.15           13.94 
[1] "0.5 - 83.8 (13.2)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
  "CDH10 MUTATED"   "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "CDH10 MUTATED" "CDH10 WILD-TYPE"   "CDH10 MUTATED"   "CDH10 MUTATED" 
     TCGA-91-6836 
"CDH10 WILD-TYPE" 
[1] "hr=" "1.9"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     20   13
  CDH10 WILD-TYPE   73   66
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE            20              73
  MALE              13              66
D11V4, continuous
[1] "Remove cluster labels:" "CDH10 MUTATED"         
clus
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
D11V5, multiclass
D11V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1            12              29
  T2            17              91
  T3             1              13
  T4             3               5
D11V7, multiclass
       clus
vv      CDH10 MUTATED CDH10 WILD-TYPE
  N0               23              72
  N1                4              33
  N2+N3             5              30
D11V8, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  M0            27             110
  M1             0               9
  MX             6              16
D11V9, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I              23              65
  II              3              30
  III             6              33
  IV              0               9
D11V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      3   30
  CDH10 WILD-TYPE   13  126
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  NO              3              13
  YES            30             126
D11V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      2   31
  CDH10 WILD-TYPE   26  113
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  NO              2              26
  YES            31             113

Clustering(12) Variable = TMTC1 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   14  5
  TMTC1 WILD-TYPE 85 45
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             19             130 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              5              45 
$`TMTC1 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4420 
        3.98        37.02         9.96        47.05         2.96        29.95 
TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-44-3918 TCGA-50-5045 TCGA-50-5941 
       26.01        25.02        47.61         6.44        71.47         9.37 
TCGA-50-5942 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4668 TCGA-73-4670 
        4.44        16.67        39.52         1.97        15.35         0.46 
TCGA-91-6829 
       41.33 

$`TMTC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07        19.92        14.01        24.03         8.02        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 
       14.93         8.98        30.02        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        0.10        30.44         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.46            0.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          71.47           85.32 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          16.67           13.15 
[1] "0.5 - 71.5 (16.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-91-6836 
"TMTC1 WILD-TYPE" 
[1] "hr=" "1.6"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     16    6
  TMTC1 WILD-TYPE   77   73
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE            16              77
  MALE               6              73
D12V4, continuous
[1] "Remove cluster labels:" "TMTC1 MUTATED"         
clus
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
D12V5, multiclass
D12V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             3              38
  T2            14              94
  T3             2              12
  T4             3               5
D12V7, multiclass
       clus
vv      TMTC1 MUTATED TMTC1 WILD-TYPE
  N0               11              84
  N1                6              31
  N2+N3             5              30
D12V8, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  M0            19             118
  M1             2               7
  MX             1              21
D12V9, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  I               9              79
  II              3              30
  III             7              32
  IV              2               7
D12V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      2   20
  TMTC1 WILD-TYPE   14  136
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              2              14
  YES            20             136
D12V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      3   19
  TMTC1 WILD-TYPE   25  125
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              3              25
  YES            19             125

Clustering(13) Variable = MUC7 MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED   11  3
  MUC7 WILD-TYPE 88 47
  MUC7 MUTATED MUC7 WILD-TYPE 
            14            135 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             47 
$`MUC7 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-44-6778 
       19.92        37.02        30.02         7.36         8.68        36.49 
TCGA-49-4507 TCGA-49-6742 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 TCGA-64-5774 
        8.81        15.02        11.05        23.05         2.86        83.84 
TCGA-64-5781 TCGA-91-6828 
       39.52         1.22 

$`MUC7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       14.07        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MUC7 MUTATED MUC7 WILD-TYPE 
          1.22           0.07 
  MUC7 MUTATED MUC7 WILD-TYPE 
         83.84          85.32 
  MUC7 MUTATED MUC7 WILD-TYPE 
         17.47          13.15 
[1] "1.2 - 83.8 (17.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-91-6836 
"MUC7 WILD-TYPE" 
[1] "hr=" "2"  
D13V2, continuous
D13V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      4   11
  MUC7 WILD-TYPE   89   68
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            4             89
  MALE             11             68
D13V4, continuous
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-64-1677     TCGA-64-5778     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D13V5, multiclass
D13V6, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  T1            5             36
  T2            8            100
  T3            2             12
  T4            0              8
D13V7, multiclass
       clus
vv      MUC7 MUTATED MUC7 WILD-TYPE
  N0               9             86
  N1               4             33
  N2+N3            2             33
D13V8, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  M0           12            125
  M1            0              9
  MX            3             19
D13V9, multiclass
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  I              9             79
  II             3             30
  III            3             36
  IV             0              9
D13V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      1   14
  MUC7 WILD-TYPE   15  142
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             1             15
  YES           14            142
D13V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      2   13
  MUC7 WILD-TYPE   26  131
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             2             26
  YES           13            131

Clustering(14) Variable = EPHA6 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED   15  6
  EPHA6 WILD-TYPE 84 44
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             21             128 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              6              44 
$`EPHA6 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96         8.98        29.95        30.02        26.01 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6778 TCGA-49-4494 TCGA-50-5066 
       49.02        19.10         8.09        36.49        35.54         9.76 
TCGA-50-5942 TCGA-55-1595 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 
        4.44        48.62        30.44        16.67         1.97         2.04 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4677 
       23.38        29.95         1.25 

$`EPHA6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4426 TCGA-05-4430 
        8.02        20.05         2.96        14.93        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
       39.52         7.33         0.99         0.59         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        0.69        13.87         2.01        52.57        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           1.25            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          49.02           85.32 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          19.92           13.07 
[1] "1.2 - 49.0 (19.9)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "EPHA6 MUTATED"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6836 
"EPHA6 WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      8   14
  EPHA6 WILD-TYPE   85   65
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             8              85
  MALE              14              65
D14V4, continuous
D14V5, multiclass
D14V6, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  T1             5              36
  T2            12              96
  T3             4              10
  T4             1               7
D14V7, multiclass
       clus
vv      EPHA6 MUTATED EPHA6 WILD-TYPE
  N0               14              81
  N1                3              34
  N2+N3             5              30
D14V8, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            21             116
  M1             0               9
  MX             1              21
D14V9, multiclass
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  I              12              76
  II              3              30
  III             6              33
  IV              0               9
D14V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   14  136
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              14
  YES            20             136
D14V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   26  124
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              26
  YES            20             124

Clustering(15) Variable = ZNF676 MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  ZNF676 MUTATED    9  5
  ZNF676 WILD-TYPE 90 45
  ZNF676 MUTATED ZNF676 WILD-TYPE 
              14              135 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               5               45 
$`ZNF676 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-38-4631 TCGA-44-6144 
       19.92        14.93         8.98        30.02        11.64         0.30 
TCGA-44-6777 TCGA-50-5931 TCGA-55-1595 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 
       32.45         8.78        48.62         2.86        39.52         1.97 
TCGA-73-4658 TCGA-73-4668 
       52.57        15.35 

$`ZNF676 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4420 TCGA-05-4426 
       47.05         8.02        20.05         2.96        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ZNF676 MUTATED ZNF676 WILD-TYPE 
            0.30             0.07 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           52.57            85.32 
  ZNF676 MUTATED ZNF676 WILD-TYPE 
           15.14            13.15 
[1] "0.3 - 52.6 (15.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" "ZNF676 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "ZNF676 MUTATED" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE"   "ZNF676 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-91-6836 
"ZNF676 WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      9    7
  ZNF676 WILD-TYPE   84   72
        clus
vv       ZNF676 MUTATED ZNF676 WILD-TYPE
  FEMALE              9               84
  MALE                7               72
D15V4, continuous
[1] "Remove cluster labels:" "ZNF676 MUTATED"        
clus
  ZNF676 MUTATED ZNF676 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" "ZNF676 WILD-TYPE" 
D15V5, multiclass
D15V6, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  T1              4               37
  T2             10               98
  T3              2               12
  T4              0                8
D15V7, multiclass
       clus
vv      ZNF676 MUTATED ZNF676 WILD-TYPE
  N0                10               85
  N1                 2               35
  N2+N3              3               32
D15V8, multiclass
    clus
vv   ZNF676 MUTATED ZNF676 WILD-TYPE
  M0             14              123
  M1              1                8
  MX              1               21
D15V9, multiclass
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  I               11               77
  II               2               31
  III              2               37
  IV               1                8
D15V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      1   15
  ZNF676 WILD-TYPE   15  141
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  NO               1               15
  YES             15              141
D15V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF676 MUTATED      1   15
  ZNF676 WILD-TYPE   27  129
     clus
vv    ZNF676 MUTATED ZNF676 WILD-TYPE
  NO               1               27
  YES             15              129

Clustering(16) Variable = OR4C16 MUTATION ANALYSIS
D16V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED    9  4
  OR4C16 WILD-TYPE 90 46
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              13              136 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               4               46 
$`OR4C16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-49-4487 TCGA-49-6743 TCGA-50-5049 TCGA-50-5066 
       19.92         9.96        28.11        12.13        48.82         9.76 
TCGA-50-5941 TCGA-50-6592 TCGA-50-6594 TCGA-55-1595 TCGA-64-5781 TCGA-71-6725 
        9.37        25.51        12.16        48.62        39.52         2.01 
TCGA-91-6831 
        1.28 

$`OR4C16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       11.05         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            1.28             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           48.82            85.32 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           12.16            13.94 
[1] "1.3 - 48.8 (12.2)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-91-6836 
"OR4C16 WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      8    5
  OR4C16 WILD-TYPE   85   74
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              8               85
  MALE                5               74
D16V4, continuous
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5778       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D16V5, multiclass
D16V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              4               37
  T2              7              101
  T3              1               13
  T4              1                7
D16V7, multiclass
       clus
vv      OR4C16 MUTATED OR4C16 WILD-TYPE
  N0                 9               86
  N1                 1               36
  N2+N3              3               32
D16V8, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0             11              126
  M1              0                9
  MX              2               20
D16V9, multiclass
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  I                9               79
  II               0               33
  III              4               35
  IV               0                9
D16V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      1   12
  OR4C16 WILD-TYPE   15  144
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               1               15
  YES             12              144
D16V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      1   12
  OR4C16 WILD-TYPE   27  132
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               1               27
  YES             12              132

Clustering(17) Variable = RIMS2 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   15 14
  RIMS2 WILD-TYPE 84 36
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             29             120 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             14              36 
$`RIMS2 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4415 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 
       38.07        19.92         2.96        49.02        35.28        44.61 
TCGA-44-2656 TCGA-44-6778 TCGA-49-4510 TCGA-49-6742 TCGA-50-5049 TCGA-50-5066 
       19.10        36.49        29.46        15.02        48.82         9.76 
TCGA-50-5932 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 
       35.87        77.88        42.31        11.05        23.05         2.86 
TCGA-64-1677 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       20.65         0.10        39.52         7.33         0.99         1.97 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-91-6828 TCGA-91-6836 
       52.57        23.38        20.28         1.22         0.36 

$`RIMS2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       28.37        11.64         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
        4.44        12.26        11.47         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
        6.21        33.37        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       30.44        16.67         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        0.69        13.87         2.01        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.10            0.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          77.88           85.32 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          20.65           12.46 
[1] "0.1 - 77.9 (20.6)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-91-6836 
  "RIMS2 MUTATED" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     14   18
  RIMS2 WILD-TYPE   79   61
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE            14              79
  MALE              18              61
D17V4, continuous
D17V5, multiclass
D17V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             7              34
  T2            20              88
  T3             2              12
  T4             3               5
D17V7, multiclass
       clus
vv      RIMS2 MUTATED RIMS2 WILD-TYPE
  N0               18              77
  N1                8              29
  N2+N3             6              29
D17V8, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            24             113
  M1             2               7
  MX             5              17
D17V9, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I              16              72
  II              7              26
  III             7              32
  IV              2               7
D17V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   29
  RIMS2 WILD-TYPE   13  127
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              3              13
  YES            29             127
D17V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   29
  RIMS2 WILD-TYPE   25  115
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              3              25
  YES            29             115

Clustering(18) Variable = GABRB3 MUTATION ANALYSIS
D18V1, survival
                  sevent
clus2               0  1
  GABRB3 MUTATED    3  7
  GABRB3 WILD-TYPE 96 43
  GABRB3 MUTATED GABRB3 WILD-TYPE 
              10              139 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               7               43 
$`GABRB3 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4631 TCGA-38-4632 TCGA-49-4486 TCGA-50-6590 
       19.92         9.96        11.64        44.61        76.21        42.31 
TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 TCGA-73-4677 
       23.05        16.67        20.28         1.25 

$`GABRB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GABRB3 MUTATED GABRB3 WILD-TYPE 
            1.25             0.07 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           76.21            85.32 
  GABRB3 MUTATED GABRB3 WILD-TYPE 
           20.10            13.15 
[1] "1.2 - 76.2 (20.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GABRB3 MUTATED"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GABRB3 MUTATED" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" "GABRB3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE"   "GABRB3 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-91-6836 
"GABRB3 WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      4    7
  GABRB3 WILD-TYPE   89   72
        clus
vv       GABRB3 MUTATED GABRB3 WILD-TYPE
  FEMALE              4               89
  MALE                7               72
D18V4, continuous
[1] "Remove cluster labels:" "GABRB3 MUTATED"        
clus
  GABRB3 MUTATED GABRB3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" "GABRB3 WILD-TYPE" 
D18V5, multiclass
D18V6, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  T1              2               39
  T2              8              100
  T3              0               14
  T4              1                7
D18V7, multiclass
       clus
vv      GABRB3 MUTATED GABRB3 WILD-TYPE
  N0                 8               87
  N1                 2               35
  N2+N3              1               34
D18V8, multiclass
    clus
vv   GABRB3 MUTATED GABRB3 WILD-TYPE
  M0              9              128
  M1              2                7
  MX              0               22
D18V9, multiclass
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               2                7
D18V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      1   10
  GABRB3 WILD-TYPE   15  146
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  NO               1               15
  YES             10              146
D18V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRB3 MUTATED      2    9
  GABRB3 WILD-TYPE   26  135
     clus
vv    GABRB3 MUTATED GABRB3 WILD-TYPE
  NO               2               26
  YES              9              135

Clustering(19) Variable = OR2L3 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  OR2L3 MUTATED   10  3
  OR2L3 WILD-TYPE 89 47
  OR2L3 MUTATED OR2L3 WILD-TYPE 
             13             136 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              3              47 
$`OR2L3 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 
        3.98        19.92         9.96        26.01        25.02         8.68 
TCGA-44-2656 TCGA-44-2668 TCGA-44-6145 TCGA-55-1596 TCGA-55-6712 TCGA-91-6828 
       19.10         8.09         3.35        45.17         0.79         1.22 
TCGA-91-6829 
       41.33 

$`OR2L3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.28         1.15         0.36 

  OR2L3 MUTATED OR2L3 WILD-TYPE 
           0.79            0.07 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
          45.17           85.32 
  OR2L3 MUTATED OR2L3 WILD-TYPE 
           9.96           13.94 
[1] "0.8 - 45.2 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L3 WILD-TYPE"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE"   "OR2L3 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR2L3 MUTATED"   "OR2L3 MUTATED" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-91-6836 
"OR2L3 WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      3   10
  OR2L3 WILD-TYPE   90   69
        clus
vv       OR2L3 MUTATED OR2L3 WILD-TYPE
  FEMALE             3              90
  MALE              10              69
D19V4, continuous
[1] "Remove cluster labels:" "OR2L3 MUTATED"         
clus
  OR2L3 MUTATED OR2L3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" "OR2L3 WILD-TYPE" 
D19V5, multiclass
D19V6, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             1               7
D19V7, multiclass
       clus
vv      OR2L3 MUTATED OR2L3 WILD-TYPE
  N0                6              89
  N1                6              31
  N2+N3             1              34
D19V8, multiclass
    clus
vv   OR2L3 MUTATED OR2L3 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             3              19
D19V9, multiclass
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  I               6              82
  II              3              30
  III             3              36
  IV              0               9
D19V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      0   13
  OR2L3 WILD-TYPE   16  143
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  NO              0              16
  YES            13             143
D19V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L3 MUTATED      0   13
  OR2L3 WILD-TYPE   28  131
     clus
vv    OR2L3 MUTATED OR2L3 WILD-TYPE
  NO              0              28
  YES            13             131

Clustering(20) Variable = CD5L MUTATION ANALYSIS
D20V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    6  4
  CD5L WILD-TYPE 93 46
  CD5L MUTATED CD5L WILD-TYPE 
            10            139 
  CD5L MUTATED CD5L WILD-TYPE 
             4             46 
$`CD5L MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-49-4488 TCGA-50-5072 
       19.92         9.96        24.03        19.10        28.57         8.05 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5778 TCGA-67-6215 
       77.88         9.37        30.44         0.89 

$`CD5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CD5L MUTATED CD5L WILD-TYPE 
          0.89           0.07 
  CD5L MUTATED CD5L WILD-TYPE 
         77.88          85.32 
  CD5L MUTATED CD5L WILD-TYPE 
         19.51          13.15 
[1] "0.9 - 77.9 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6836 
"CD5L WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      4    8
  CD5L WILD-TYPE   89   71
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            4             89
  MALE              8             71
D20V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D20V5, multiclass
D20V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            2              6
D20V7, multiclass
       clus
vv      CD5L MUTATED CD5L WILD-TYPE
  N0               7             88
  N1               2             35
  N2+N3            3             32
D20V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0           11            126
  M1            0              9
  MX            1             21
D20V9, multiclass
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  I              7             81
  II             1             32
  III            4             35
  IV             0              9
D20V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      2   10
  CD5L WILD-TYPE   14  146
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             2             14
  YES           10            146
D20V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      1   11
  CD5L WILD-TYPE   27  133
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             1             27
  YES           11            133

Clustering(21) Variable = CNBD1 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    6  3
  CNBD1 WILD-TYPE 93 47
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              9             140 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              3              47 
$`CNBD1 MUTATED`
TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-49-6743 TCGA-50-5931 
       37.02        24.03        47.05        26.01        12.13         8.78 
TCGA-50-6594 TCGA-55-1595 TCGA-91-6831 
       12.16        48.62         1.28 

$`CNBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 
       38.07         3.98        19.92        14.01         9.96         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.28            0.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          48.62           85.32 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 48.6 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED"   "CNBD1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-91-6836 
"CNBD1 WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      8    2
  CNBD1 WILD-TYPE   85   77
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             8              85
  MALE               2              77
D21V4, continuous
D21V5, multiclass
D21V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             1              13
  T4             1               7
D21V7, multiclass
       clus
vv      CNBD1 MUTATED CNBD1 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
D21V8, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D21V9, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D21V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      0   10
  CNBD1 WILD-TYPE   16  146
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              0              16
  YES            10             146
D21V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      1    9
  CNBD1 WILD-TYPE   27  135
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  NO              1              27
  YES             9             135

Clustering(22) Variable = ELTD1 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    5  7
  ELTD1 WILD-TYPE 94 43
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             12             137 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              7              43 
$`ELTD1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4427 TCGA-44-2656 TCGA-49-4494 TCGA-49-6743 
        3.98         9.96        26.01        19.10        35.54        12.13 
TCGA-50-5072 TCGA-50-6590 TCGA-50-6594 TCGA-64-1677 TCGA-73-4668 TCGA-91-6829 
        8.05        42.31        12.16        20.65        15.35        41.33 

$`ELTD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           3.98            0.07 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          42.31           85.32 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         17.225          13.150 
[1] "4.0 - 42.3 (17.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-91-6836 
"ELTD1 WILD-TYPE" 
[1] "hr=" "2"  
D22V2, continuous
D22V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      9    6
  ELTD1 WILD-TYPE   84   73
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D22V4, continuous
[1] "Remove cluster labels:" "ELTD1 MUTATED"         
clus
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
D22V5, multiclass
D22V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             1              40
  T2             9              99
  T3             4              10
  T4             1               7
D22V7, multiclass
       clus
vv      ELTD1 MUTATED ELTD1 WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             5              30
D22V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             3              19
D22V9, multiclass
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  I               4              84
  II              4              29
  III             7              32
  IV              0               9
D22V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   14
  ELTD1 WILD-TYPE   15  142
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              1              15
  YES            14             142
D22V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      2   13
  ELTD1 WILD-TYPE   26  131
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              2              26
  YES            13             131

Clustering(23) Variable = KRTAP1-5 MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  KRTAP1-5 MUTATED    3  3
  KRTAP1-5 WILD-TYPE 96 47
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 6                143 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                 47 
$`KRTAP1-5 MUTATED`
TCGA-05-4405 TCGA-44-5643 TCGA-44-6146 TCGA-49-4490 TCGA-50-6591 TCGA-64-5775 
       20.05         3.48         9.93        12.66         3.88         0.10 

$`KRTAP1-5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
              0.10               0.07 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
             20.05              85.32 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
             6.905             14.070 
[1] "0.1 - 20.1 (6.9)"  "0.1 - 85.3 (14.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
[1] "hr=" "5.5"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP1-5 MUTATED      3    4
  KRTAP1-5 WILD-TYPE   90   75
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  FEMALE                3                 90
  MALE                  4                 75
D23V4, continuous
D23V5, multiclass
D23V6, multiclass
    clus
vv   KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  T1                1                 40
  T2                3                105
  T3                2                 12
  T4                1                  7
D23V7, multiclass
       clus
vv      KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  N0                   4                 91
  N1                   1                 36
  N2+N3                2                 33
D23V8, multiclass
    clus
vv   KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  M0                6                131
  M1                1                  8
  MX                0                 22
D23V9, multiclass
     clus
vv    KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  I                  1                 87
  II                 2                 31
  III                3                 36
  IV                 1                  8
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP1-5 MUTATED      2    5
  KRTAP1-5 WILD-TYPE   14  151
     clus
vv    KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  NO                 2                 14
  YES                5                151
D23V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP1-5 MUTATED      3    4
  KRTAP1-5 WILD-TYPE   25  140
     clus
vv    KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  NO                 3                 25
  YES                4                140

Clustering(24) Variable = OR2T4 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  OR2T4 MUTATED    4  6
  OR2T4 WILD-TYPE 95 44
  OR2T4 MUTATED OR2T4 WILD-TYPE 
             10             139 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              6              44 
$`OR2T4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5423 TCGA-35-3615 TCGA-35-5375 TCGA-44-6777 
       19.92         9.96         4.96         0.46         8.68        32.45 
TCGA-49-4487 TCGA-50-6592 TCGA-50-6594 TCGA-64-1677 
       28.11        25.51        12.16        20.65 

$`OR2T4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
       15.02         1.02         2.96         0.99         2.04         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR2T4 MUTATED OR2T4 WILD-TYPE 
           0.46            0.07 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          32.45           85.32 
  OR2T4 MUTATED OR2T4 WILD-TYPE 
          16.04           13.87 
[1] "0.5 - 32.5 (16.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE"   "OR2T4 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T4 WILD-TYPE"   "OR2T4 MUTATED" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-91-6836 
"OR2T4 WILD-TYPE" 
[1] "hr=" "3.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      6    7
  OR2T4 WILD-TYPE   87   72
        clus
vv       OR2T4 MUTATED OR2T4 WILD-TYPE
  FEMALE             6              87
  MALE               7              72
D24V4, continuous
[1] "Remove cluster labels:" "OR2T4 MUTATED"         
clus
  OR2T4 MUTATED OR2T4 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR2T4 WILD-TYPE" "OR2T4 WILD-TYPE" 
D24V5, multiclass
D24V6, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  T1             1              40
  T2             8             100
  T3             2              12
  T4             2               6
D24V7, multiclass
       clus
vv      OR2T4 MUTATED OR2T4 WILD-TYPE
  N0                6              89
  N1                2              35
  N2+N3             4              31
D24V8, multiclass
    clus
vv   OR2T4 MUTATED OR2T4 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             2              20
D24V9, multiclass
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  I               6              82
  II              2              31
  III             5              34
  IV              0               9
D24V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      1   12
  OR2T4 WILD-TYPE   15  144
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  NO              1              15
  YES            12             144
D24V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T4 MUTATED      0   13
  OR2T4 WILD-TYPE   28  131
     clus
vv    OR2T4 MUTATED OR2T4 WILD-TYPE
  NO              0              28
  YES            13             131

Clustering(25) Variable = REG3A MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    9  3
  REG3A WILD-TYPE 90 47
  REG3A MUTATED REG3A WILD-TYPE 
             12             137 
  REG3A MUTATED REG3A WILD-TYPE 
              3              47 
$`REG3A MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-44-2656 TCGA-44-2657 TCGA-44-3918 
        9.96        24.03        25.02        19.10        13.15         6.44 
TCGA-44-6775 TCGA-50-5941 TCGA-55-1595 TCGA-64-5779 TCGA-64-5781 TCGA-91-6829 
        2.70         9.37        48.62        16.67        39.52        41.33 

$`REG3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       18.87        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  REG3A MUTATED REG3A WILD-TYPE 
           2.70            0.07 
  REG3A MUTATED REG3A WILD-TYPE 
          48.62           85.32 
  REG3A MUTATED REG3A WILD-TYPE 
         17.885          13.150 
[1] "2.7 - 48.6 (17.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG3A WILD-TYPE"   "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "REG3A MUTATED"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-91-6836 
"REG3A WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      6    8
  REG3A WILD-TYPE   87   71
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D25V4, continuous
D25V5, multiclass
D25V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             3              38
  T2            10              98
  T3             0              14
  T4             1               7
D25V7, multiclass
       clus
vv      REG3A MUTATED REG3A WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             2              33
D25V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0            12             125
  M1             0               9
  MX             2              20
D25V9, multiclass
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  I               8              80
  II              3              30
  III             3              36
  IV              0               9
D25V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   14
  REG3A WILD-TYPE   16  142
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0              16
  YES            14             142
D25V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      1   13
  REG3A WILD-TYPE   27  131
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              1              27
  YES            13             131

Clustering(26) Variable = TRIM58 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    4  3
  TRIM58 WILD-TYPE 95 47
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               7              142 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               3               47 
$`TRIM58 MUTATED`
TCGA-05-5429 TCGA-44-2655 TCGA-44-6778 TCGA-49-4488 TCGA-50-6590 TCGA-50-6592 
        0.99        18.87        36.49        28.57        42.31        25.51 
TCGA-67-3774 
        0.59 

$`TRIM58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       63.72        32.45        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.59             0.07 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           42.31            85.32 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           25.51            13.15 
[1] "0.6 - 42.3 (25.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-91-6836 
"TRIM58 WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5    3
  TRIM58 WILD-TYPE   88   76
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D26V4, continuous
D26V5, multiclass
D26V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              3               38
  T2              4              104
  T3              1               13
  T4              0                8
D26V7, multiclass
       clus
vv      TRIM58 MUTATED TRIM58 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D26V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
D26V9, multiclass
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D26V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0    8
  TRIM58 WILD-TYPE   16  148
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0               16
  YES              8              148
D26V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0    8
  TRIM58 WILD-TYPE   28  136
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0               28
  YES              8              136

Clustering(27) Variable = BRAF MUTATION ANALYSIS
D27V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    7  4
  BRAF WILD-TYPE 92 46
  BRAF MUTATED BRAF WILD-TYPE 
            11            138 
  BRAF MUTATED BRAF WILD-TYPE 
             4             46 
$`BRAF MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-44-2662 TCGA-44-2666 TCGA-44-3918 TCGA-44-6774 
       38.07        19.92        15.78         3.19         6.44         5.42 
TCGA-50-5044 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-6594 
       20.48        77.88         9.37         4.44        12.16 

$`BRAF WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
        8.78        35.87        21.47         8.45        15.12        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  BRAF MUTATED BRAF WILD-TYPE 
          3.19           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         77.88          85.32 
  BRAF MUTATED BRAF WILD-TYPE 
         12.16          13.94 
[1] "3.2 - 77.9 (12.2)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6836 
"BRAF WILD-TYPE" 
[1] "hr=" "1"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    9
  BRAF WILD-TYPE   87   70
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            6             87
  MALE              9             70
D27V4, continuous
D27V5, multiclass
D27V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            5             36
  T2            7            101
  T3            1             13
  T4            2              6
D27V7, multiclass
       clus
vv      BRAF MUTATED BRAF WILD-TYPE
  N0               9             86
  N1               2             35
  N2+N3            4             31
D27V8, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           15            122
  M1            0              9
  MX            0             22
D27V9, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              8             80
  II             1             32
  III            5             34
  IV             0              9
D27V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2   13
  BRAF WILD-TYPE   14  143
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             2             14
  YES           13            143
D27V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      1   14
  BRAF WILD-TYPE   27  130
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             1             27
  YES           14            130

Clustering(28) Variable = OR4A5 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  OR4A5 MUTATED    8  4
  OR4A5 WILD-TYPE 91 46
  OR4A5 MUTATED OR4A5 WILD-TYPE 
             12             137 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              4              46 
$`OR4A5 MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2659 TCGA-44-3396 TCGA-49-6743 TCGA-49-6744 
        8.68        11.64        17.39        10.22        12.13        12.99 
TCGA-50-5930 TCGA-50-6594 TCGA-64-1677 TCGA-67-6215 TCGA-73-4670 TCGA-91-6836 
        9.27        12.16        20.65         0.89         0.46         0.36 

$`OR4A5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        43.20        15.02         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  OR4A5 MUTATED OR4A5 WILD-TYPE 
           0.36            0.07 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          20.65           85.32 
  OR4A5 MUTATED OR4A5 WILD-TYPE 
          10.93           14.96 
[1] "0.4 - 20.6 (10.9)" "0.1 - 85.3 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4A5 WILD-TYPE"   "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE"   "OR4A5 MUTATED" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "OR4A5 MUTATED" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-91-6836 
  "OR4A5 MUTATED" 
[1] "hr=" "3"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED     10    2
  OR4A5 WILD-TYPE   83   77
        clus
vv       OR4A5 MUTATED OR4A5 WILD-TYPE
  FEMALE            10              83
  MALE               2              77
D28V4, continuous
[1] "Remove cluster labels:" "OR4A5 MUTATED"         
clus
  OR4A5 MUTATED OR4A5 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-5778      TCGA-71-6725 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR4A5 WILD-TYPE" "OR4A5 WILD-TYPE" 
D28V5, multiclass
D28V6, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             1              13
  T4             0               8
D28V7, multiclass
       clus
vv      OR4A5 MUTATED OR4A5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             6              29
D28V8, multiclass
    clus
vv   OR4A5 MUTATED OR4A5 WILD-TYPE
  M0             8             129
  M1             1               8
  MX             3              19
D28V9, multiclass
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  I               3              85
  II              2              31
  III             6              33
  IV              1               8
D28V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      1   11
  OR4A5 WILD-TYPE   15  145
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  NO              1              15
  YES            11             145
D28V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4A5 MUTATED      6    6
  OR4A5 WILD-TYPE   22  138
     clus
vv    OR4A5 MUTATED OR4A5 WILD-TYPE
  NO              6              22
  YES             6             138

Clustering(29) Variable = REG1B MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED   10  2
  REG1B WILD-TYPE 89 48
  REG1B MUTATED REG1B WILD-TYPE 
             12             137 
  REG1B MUTATED REG1B WILD-TYPE 
              2              48 
$`REG1B MUTATED`
TCGA-05-4417 TCGA-05-4427 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-44-2657 
       14.93        26.01         0.46         7.36         8.68        13.15 
TCGA-44-3918 TCGA-49-4510 TCGA-50-5045 TCGA-50-5049 TCGA-73-4668 TCGA-73-4676 
        6.44        29.46        71.47        48.82        15.35         4.01 

$`REG1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       12.99         4.93        20.48        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
       23.38        29.95        20.28         0.46         1.32         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  REG1B MUTATED REG1B WILD-TYPE 
           0.46            0.07 
  REG1B MUTATED REG1B WILD-TYPE 
          71.47           85.32 
  REG1B MUTATED REG1B WILD-TYPE 
          14.04           13.87 
[1] "0.5 - 71.5 (14.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED"   "REG1B MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6836 
"REG1B WILD-TYPE" 
[1] "hr=" "2.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      7    5
  REG1B WILD-TYPE   86   74
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D29V4, continuous
D29V5, multiclass
D29V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             2              39
  T2            10              98
  T3             0              14
  T4             0               8
D29V7, multiclass
       clus
vv      REG1B MUTATED REG1B WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             1              34
D29V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            12             125
  M1             0               9
  MX             0              22
D29V9, multiclass
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  I               7              81
  II              4              29
  III             1              38
  IV              0               9
D29V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3    9
  REG1B WILD-TYPE   13  147
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              3              13
  YES             9             147
D29V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      2   10
  REG1B WILD-TYPE   26  134
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              2              26
  YES            10             134

Clustering(30) Variable = BAGE2 MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    2  5
  BAGE2 WILD-TYPE 97 45
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              7             142 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              5              45 
$`BAGE2 MUTATED`
TCGA-05-4397 TCGA-50-5931 TCGA-50-5933 TCGA-50-6591 TCGA-50-6592 TCGA-64-5781 
       24.03         8.78        77.88         3.88        25.51        39.52 
TCGA-91-6831 
        1.28 

$`BAGE2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       12.26        11.47        42.31        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           1.28            0.07 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          77.88           85.32 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          24.03           13.51 
[1] "1.3 - 77.9 (24.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED"   "BAGE2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-91-6836 
"BAGE2 WILD-TYPE" 
[1] "hr=" "1.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      4    5
  BAGE2 WILD-TYPE   89   74
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             4              89
  MALE               5              74
D30V4, continuous
D30V5, multiclass
D30V6, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             1               7
D30V7, multiclass
       clus
vv      BAGE2 MUTATED BAGE2 WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             1              34
D30V8, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             1              21
D30V9, multiclass
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  I               6              82
  II              1              32
  III             1              38
  IV              1               8
D30V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      1    8
  BAGE2 WILD-TYPE   15  148
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              1              15
  YES             8             148
D30V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    9
  BAGE2 WILD-TYPE   28  135
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              0              28
  YES             9             135

Clustering(31) Variable = OR2L8 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  OR2L8 MUTATED    9  3
  OR2L8 WILD-TYPE 90 47
  OR2L8 MUTATED OR2L8 WILD-TYPE 
             12             137 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              3              47 
$`OR2L8 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-35-4123 TCGA-38-4626 TCGA-38-4629 
       19.92         9.96        26.01         5.95        85.32        28.37 
TCGA-44-2662 TCGA-44-3918 TCGA-49-4488 TCGA-50-5066 TCGA-55-1596 TCGA-64-1676 
       15.78         6.44        28.57         9.76        45.17        56.81 

$`OR2L8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        7.36         8.68        47.61        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR2L8 MUTATED OR2L8 WILD-TYPE 
           5.95            0.07 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
          85.32           83.84 
  OR2L8 MUTATED OR2L8 WILD-TYPE 
         22.965          13.150 
[1] "6.0 - 85.3 (23.0)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" "OR2L8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE"   "OR2L8 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR2L8 MUTATED" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-91-6836 
"OR2L8 WILD-TYPE" 
[1] "hr=" "2.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      4    8
  OR2L8 WILD-TYPE   89   71
        clus
vv       OR2L8 MUTATED OR2L8 WILD-TYPE
  FEMALE             4              89
  MALE               8              71
D31V4, continuous
[1] "Remove cluster labels:" "OR2L8 MUTATED"         
clus
  OR2L8 MUTATED OR2L8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" "OR2L8 WILD-TYPE" 
D31V5, multiclass
D31V6, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             1              13
  T4             1               7
D31V7, multiclass
       clus
vv      OR2L8 MUTATED OR2L8 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
D31V8, multiclass
    clus
vv   OR2L8 MUTATED OR2L8 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D31V9, multiclass
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  I               7              81
  II              4              29
  III             1              38
  IV              0               9
D31V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      0   12
  OR2L8 WILD-TYPE   16  144
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  NO              0              16
  YES            12             144
D31V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L8 MUTATED      1   11
  OR2L8 WILD-TYPE   27  133
     clus
vv    OR2L8 MUTATED OR2L8 WILD-TYPE
  NO              1              27
  YES            11             133

Clustering(32) Variable = NRG3 MUTATION ANALYSIS
D32V1, survival
                sevent
clus2             0  1
  NRG3 MUTATED    9  3
  NRG3 WILD-TYPE 90 47
  NRG3 MUTATED NRG3 WILD-TYPE 
            12            137 
  NRG3 MUTATED NRG3 WILD-TYPE 
             3             47 
$`NRG3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        9.96        47.05        30.02        26.01        25.02         5.95 
TCGA-44-2662 TCGA-44-5643 TCGA-44-6145 TCGA-50-5931 TCGA-50-5935 TCGA-73-4668 
       15.78         3.48         3.35         8.78        21.47        15.35 

$`NRG3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NRG3 MUTATED NRG3 WILD-TYPE 
          3.35           0.07 
  NRG3 MUTATED NRG3 WILD-TYPE 
         47.05          85.32 
  NRG3 MUTATED NRG3 WILD-TYPE 
        15.565         13.150 
[1] "3.4 - 47.0 (15.6)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "NRG3 MUTATED" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "NRG3 MUTATED" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" "NRG3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE"   "NRG3 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-91-6836 
"NRG3 WILD-TYPE" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      6    7
  NRG3 WILD-TYPE   87   72
        clus
vv       NRG3 MUTATED NRG3 WILD-TYPE
  FEMALE            6             87
  MALE              7             72
D32V4, continuous
[1] "Remove cluster labels:" "NRG3 MUTATED"          
clus
  NRG3 MUTATED NRG3 WILD-TYPE 
             2             10 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"NRG3 WILD-TYPE" "NRG3 WILD-TYPE" 
D32V5, multiclass
D32V6, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  T1            3             38
  T2            7            101
  T3            1             13
  T4            2              6
D32V7, multiclass
       clus
vv      NRG3 MUTATED NRG3 WILD-TYPE
  N0               7             88
  N1               4             33
  N2+N3            2             33
D32V8, multiclass
    clus
vv   NRG3 MUTATED NRG3 WILD-TYPE
  M0           13            124
  M1            0              9
  MX            0             22
D32V9, multiclass
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  I              6             82
  II             4             29
  III            3             36
  IV             0              9
D32V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      2   11
  NRG3 WILD-TYPE   14  145
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  NO             2             14
  YES           11            145
D32V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRG3 MUTATED      3   10
  NRG3 WILD-TYPE   25  134
     clus
vv    NRG3 MUTATED NRG3 WILD-TYPE
  NO             3             25
  YES           10            134

Clustering(33) Variable = PABPC3 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  PABPC3 MUTATED    7  0
  PABPC3 WILD-TYPE 92 50
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               7              142 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               0               50 
$`PABPC3 MUTATED`
TCGA-05-4390 TCGA-05-4426 TCGA-05-4427 TCGA-44-6776 TCGA-67-3771 TCGA-67-6215 
       37.02        26.01        26.01        63.72         1.97         0.89 
TCGA-73-4666 
       20.28 

$`PABPC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PABPC3 MUTATED PABPC3 WILD-TYPE 
            0.89             0.07 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           63.72            85.32 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           26.01            13.15 
[1] "0.9 - 63.7 (26.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6836 
"PABPC3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      6    3
  PABPC3 WILD-TYPE   87   76
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D33V4, continuous
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D33V5, multiclass
D33V6, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              0                8
D33V7, multiclass
       clus
vv      PABPC3 MUTATED PABPC3 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
D33V8, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  M0              6              131
  M1              2                7
  MX              1               21
D33V9, multiclass
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  I                6               82
  II               1               32
  III              0               39
  IV               2                7
D33V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      1    8
  PABPC3 WILD-TYPE   15  148
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               1               15
  YES              8              148
D33V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      2    7
  PABPC3 WILD-TYPE   26  137
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               2               26
  YES              7              137

Clustering(34) Variable = LRRIQ3 MUTATION ANALYSIS
D34V1, survival
                  sevent
clus2               0  1
  LRRIQ3 MUTATED    6  3
  LRRIQ3 WILD-TYPE 93 47
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               9              140 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               3               47 
$`LRRIQ3 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-44-6145 TCGA-50-5944 TCGA-50-6590 
        9.96        26.01        25.02         3.35        12.26        42.31 
TCGA-50-6593 TCGA-64-5779 TCGA-67-6215 
       11.05        16.67         0.89 

$`LRRIQ3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12         9.37         4.44        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.59         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.89             0.07 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           42.31            85.32 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           12.26            13.94 
[1] "0.9 - 42.3 (12.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-91-6836 
"LRRIQ3 WILD-TYPE" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    4
  LRRIQ3 WILD-TYPE   87   75
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D34V4, continuous
D34V5, multiclass
D34V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              3               38
  T2              6              102
  T3              0               14
  T4              1                7
D34V7, multiclass
       clus
vv      LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0                 5               90
  N1                 3               34
  N2+N3              2               33
D34V8, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              1               21
D34V9, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                5               83
  II               2               31
  III              3               36
  IV               0                9
D34V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      0   10
  LRRIQ3 WILD-TYPE   16  146
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  NO               0               16
  YES             10              146
D34V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      2    8
  LRRIQ3 WILD-TYPE   26  136
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  NO               2               26
  YES              8              136

Clustering(35) Variable = ZNF804A MUTATION ANALYSIS
D35V1, survival
                   sevent
clus2                0  1
  ZNF804A MUTATED   22  5
  ZNF804A WILD-TYPE 77 45
  ZNF804A MUTATED ZNF804A WILD-TYPE 
               27               122 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
                5                45 
$`ZNF804A MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       19.92        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4432 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-44-3398 TCGA-44-3918 
       25.02         5.95        47.61        85.32         8.32         6.44 
TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 TCGA-49-4506 TCGA-49-6742 TCGA-50-5049 
        5.42        32.45        36.49        32.84        15.02        48.82 
TCGA-50-5942 TCGA-50-6594 TCGA-64-1676 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 
        4.44        12.16        56.81        30.44        39.52         1.97 
TCGA-73-4662 TCGA-73-4668 TCGA-91-6836 
       29.95        15.35         0.36 

$`ZNF804A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        37.02        47.05         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        2.70        63.72        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  ZNF804A MUTATED ZNF804A WILD-TYPE 
             0.36              0.07 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            85.32             83.84 
  ZNF804A MUTATED ZNF804A WILD-TYPE 
            24.03             12.46 
[1] "0.4 - 85.3 (24.0)" "0.1 - 83.8 (12.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ZNF804A MUTATED" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ZNF804A WILD-TYPE"   "ZNF804A MUTATED" "ZNF804A WILD-TYPE"   "ZNF804A MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" "ZNF804A WILD-TYPE" 
       TCGA-91-6836 
  "ZNF804A MUTATED" 
[1] "hr=" "2.7"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED     17   13
  ZNF804A WILD-TYPE   76   66
        clus
vv       ZNF804A MUTATED ZNF804A WILD-TYPE
  FEMALE              17                76
  MALE                13                66
D35V4, continuous
D35V5, multiclass
D35V6, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  T1              10                31
  T2              15                93
  T3               4                10
  T4               1                 7
D35V7, multiclass
       clus
vv      ZNF804A MUTATED ZNF804A WILD-TYPE
  N0                 17                78
  N1                  8                29
  N2+N3               4                31
D35V8, multiclass
    clus
vv   ZNF804A MUTATED ZNF804A WILD-TYPE
  M0              25               112
  M1               0                 9
  MX               5                17
D35V9, multiclass
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  I                14                74
  II               10                23
  III               5                34
  IV                0                 9
D35V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED      4   26
  ZNF804A WILD-TYPE   12  130
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  NO                4                12
  YES              26               130
D35V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF804A MUTATED      3   27
  ZNF804A WILD-TYPE   25  117
     clus
vv    ZNF804A MUTATED ZNF804A WILD-TYPE
  NO                3                25
  YES              27               117

Clustering(36) Variable = MARCH11 MUTATION ANALYSIS
D36V1, survival
                   sevent
clus2                0  1
  MARCH11 MUTATED    4  3
  MARCH11 WILD-TYPE 95 47
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                7               142 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
                3                47 
$`MARCH11 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-44-6778 TCGA-55-1595 TCGA-64-5775 
        9.96        24.03        47.05        36.49        48.62         0.10 
TCGA-64-5781 
       39.52 

$`MARCH11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4402 
       38.07         3.98        19.92        14.01        37.02         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  MARCH11 MUTATED MARCH11 WILD-TYPE 
             0.10              0.07 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            48.62             85.32 
  MARCH11 MUTATED MARCH11 WILD-TYPE 
            36.49             13.15 
[1] "0.1 - 48.6 (36.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED"   "MARCH11 MUTATED"   "MARCH11 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MARCH11 WILD-TYPE"   "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "MARCH11 MUTATED" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" "MARCH11 WILD-TYPE" 
       TCGA-91-6836 
"MARCH11 WILD-TYPE" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      4    4
  MARCH11 WILD-TYPE   89   75
        clus
vv       MARCH11 MUTATED MARCH11 WILD-TYPE
  FEMALE               4                89
  MALE                 4                75
D36V4, continuous
D36V5, multiclass
D36V6, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  T1               2                39
  T2               2               106
  T3               1                13
  T4               3                 5
D36V7, multiclass
       clus
vv      MARCH11 MUTATED MARCH11 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               2                33
D36V8, multiclass
    clus
vv   MARCH11 MUTATED MARCH11 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
D36V9, multiclass
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  I                 3                85
  II                1                32
  III               4                35
  IV                0                 9
D36V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      0    8
  MARCH11 WILD-TYPE   16  148
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  NO                0                16
  YES               8               148
D36V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MARCH11 MUTATED      0    8
  MARCH11 WILD-TYPE   28  136
     clus
vv    MARCH11 MUTATED MARCH11 WILD-TYPE
  NO                0                28
  YES               8               136

Clustering(37) Variable = OR2T34 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  OR2T34 MUTATED    6  3
  OR2T34 WILD-TYPE 93 47
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               9              140 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               3               47 
$`OR2T34 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-2657 TCGA-44-2668 TCGA-50-5935 
       30.02        26.01        19.10        13.15         8.09        21.47 
TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
       42.31        12.16         1.97 

$`OR2T34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        5.19        18.87        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2T34 MUTATED OR2T34 WILD-TYPE 
            1.97             0.07 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           42.31            85.32 
  OR2T34 MUTATED OR2T34 WILD-TYPE 
           19.10            13.51 
[1] "2.0 - 42.3 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "OR2T34 MUTATED"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T34 WILD-TYPE"   "OR2T34 MUTATED" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE"   "OR2T34 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-91-6836 
"OR2T34 WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      6    4
  OR2T34 WILD-TYPE   87   75
        clus
vv       OR2T34 MUTATED OR2T34 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D37V4, continuous
[1] "Remove cluster labels:" "OR2T34 MUTATED"        
clus
  OR2T34 MUTATED OR2T34 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4676 
"OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" "OR2T34 WILD-TYPE" 
D37V5, multiclass
D37V6, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  T1              2               39
  T2              6              102
  T3              2               12
  T4              0                8
D37V7, multiclass
       clus
vv      OR2T34 MUTATED OR2T34 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
D37V8, multiclass
    clus
vv   OR2T34 MUTATED OR2T34 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
D37V9, multiclass
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  I                7               81
  II               2               31
  III              1               38
  IV               0                9
D37V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      1    9
  OR2T34 WILD-TYPE   15  147
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  NO               1               15
  YES              9              147
D37V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T34 MUTATED      0   10
  OR2T34 WILD-TYPE   28  134
     clus
vv    OR2T34 MUTATED OR2T34 WILD-TYPE
  NO               0               28
  YES             10              134

Clustering(38) Variable = C18ORF34 MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                 0  1
  C18ORF34 MUTATED   10  5
  C18ORF34 WILD-TYPE 89 45
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                15                134 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
                 5                 45 
$`C18ORF34 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-35-5375 TCGA-38-4628 TCGA-44-2668 
        3.98        19.92         9.96         8.68        49.02         8.09 
TCGA-50-6592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-64-5775 TCGA-64-5778 
       25.51        48.62        45.17         2.86         0.10        30.44 
TCGA-73-4662 TCGA-73-4666 TCGA-91-6836 
       29.95        20.28         0.36 

$`C18ORF34 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        7.36         5.95        47.61        85.32        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       38.73         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        0.69        13.87         2.01        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
              0.10               0.07 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             49.02              85.32 
  C18ORF34 MUTATED C18ORF34 WILD-TYPE 
             19.92              13.51 
[1] "0.1 - 49.0 (19.9)" "0.1 - 85.3 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
  "C18ORF34 MUTATED"   "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED"   "C18ORF34 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
  "C18ORF34 MUTATED" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" "C18ORF34 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C18ORF34 WILD-TYPE"   "C18ORF34 MUTATED" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      9   10
  C18ORF34 WILD-TYPE   84   69
        clus
vv       C18ORF34 MUTATED C18ORF34 WILD-TYPE
  FEMALE                9                 84
  MALE                 10                 69
D38V4, continuous
D38V5, multiclass
D38V6, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  T1                5                 36
  T2               11                 97
  T3                1                 13
  T4                2                  6
D38V7, multiclass
       clus
vv      C18ORF34 MUTATED C18ORF34 WILD-TYPE
  N0                  12                 83
  N1                   6                 31
  N2+N3                1                 34
D38V8, multiclass
    clus
vv   C18ORF34 MUTATED C18ORF34 WILD-TYPE
  M0               16                121
  M1                2                  7
  MX                1                 21
D38V9, multiclass
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                4                 35
  IV                 2                  7
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      2   17
  C18ORF34 WILD-TYPE   14  139
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  NO                 2                 14
  YES               17                139
D38V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C18ORF34 MUTATED      2   17
  C18ORF34 WILD-TYPE   26  127
     clus
vv    C18ORF34 MUTATED C18ORF34 WILD-TYPE
  NO                 2                 26
  YES               17                127

Clustering(39) Variable = SERPINB4 MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                 0  1
  SERPINB4 MUTATED    7  3
  SERPINB4 WILD-TYPE 92 47
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                10                139 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 3                 47 
$`SERPINB4 MUTATED`
TCGA-05-4417 TCGA-05-4424 TCGA-38-4626 TCGA-44-2668 TCGA-44-6776 TCGA-49-4486 
       14.93        30.02        85.32         8.09        63.72        76.21 
TCGA-49-4487 TCGA-50-5049 TCGA-73-4668 TCGA-73-4677 
       28.11        48.82        15.35         1.25 

$`SERPINB4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       16.41        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
              1.25               0.07 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
             85.32              83.84 
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
            29.065             12.990 
[1] "1.2 - 85.3 (29.1)" "0.1 - 83.8 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "SERPINB4 MUTATED"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" "SERPINB4 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE"   "SERPINB4 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
[1] "hr=" "2.8"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      5    5
  SERPINB4 WILD-TYPE   88   74
        clus
vv       SERPINB4 MUTATED SERPINB4 WILD-TYPE
  FEMALE                5                 88
  MALE                  5                 74
D39V4, continuous
[1] "Remove cluster labels:" "SERPINB4 MUTATED"      
clus
  SERPINB4 MUTATED SERPINB4 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-71-6725 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"SERPINB4 WILD-TYPE" "SERPINB4 WILD-TYPE" 
D39V5, multiclass
D39V6, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  T1                3                 38
  T2                6                102
  T3                1                 13
  T4                0                  8
D39V7, multiclass
       clus
vv      SERPINB4 MUTATED SERPINB4 WILD-TYPE
  N0                   9                 86
  N1                   1                 36
  N2+N3                0                 35
D39V8, multiclass
    clus
vv   SERPINB4 MUTATED SERPINB4 WILD-TYPE
  M0                9                128
  M1                0                  9
  MX                1                 21
D39V9, multiclass
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  I                  7                 81
  II                 3                 30
  III                0                 39
  IV                 0                  9
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      1    9
  SERPINB4 WILD-TYPE   15  147
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  NO                 1                 15
  YES                9                147
D39V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB4 MUTATED      1    9
  SERPINB4 WILD-TYPE   27  135
     clus
vv    SERPINB4 MUTATED SERPINB4 WILD-TYPE
  NO                 1                 27
  YES                9                135

Clustering(40) Variable = OR4C15 MUTATION ANALYSIS
D40V1, survival
                  sevent
clus2               0  1
  OR4C15 MUTATED   10  2
  OR4C15 WILD-TYPE 89 48
  OR4C15 MUTATED OR4C15 WILD-TYPE 
              12              137 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               48 
$`OR4C15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4430 TCGA-35-5375 TCGA-44-3398 
        9.96        47.05        29.95        25.02         8.68         8.32 
TCGA-49-6743 TCGA-50-5066 TCGA-50-5941 TCGA-55-6712 TCGA-73-4668 TCGA-91-6829 
       12.13         9.76         9.37         0.79        15.35        41.33 

$`OR4C15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86         0.07        32.61        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  OR4C15 MUTATED OR4C15 WILD-TYPE 
            0.79             0.07 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
           47.05            85.32 
  OR4C15 MUTATED OR4C15 WILD-TYPE 
          11.045           14.010 
[1] "0.8 - 47.0 (11.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE"   "OR4C15 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C15 WILD-TYPE"   "OR4C15 MUTATED" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-91-6836 
"OR4C15 WILD-TYPE" 
[1] "hr=" "1.8"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      6    7
  OR4C15 WILD-TYPE   87   72
        clus
vv       OR4C15 MUTATED OR4C15 WILD-TYPE
  FEMALE              6               87
  MALE                7               72
D40V4, continuous
[1] "Remove cluster labels:" "OR4C15 MUTATED"        
clus
  OR4C15 MUTATED OR4C15 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR4C15 WILD-TYPE" "OR4C15 WILD-TYPE" 
D40V5, multiclass
D40V6, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  T1              3               38
  T2              8              100
  T3              0               14
  T4              2                6
D40V7, multiclass
       clus
vv      OR4C15 MUTATED OR4C15 WILD-TYPE
  N0                 5               90
  N1                 4               33
  N2+N3              4               31
D40V8, multiclass
    clus
vv   OR4C15 MUTATED OR4C15 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              3               19
D40V9, multiclass
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  I                5               83
  II               2               31
  III              5               34
  IV               0                9
D40V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      0   13
  OR4C15 WILD-TYPE   16  143
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  NO               0               16
  YES             13              143
D40V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C15 MUTATED      2   11
  OR4C15 WILD-TYPE   26  133
     clus
vv    OR4C15 MUTATED OR4C15 WILD-TYPE
  NO               2               26
  YES             11              133

Clustering(41) Variable = ZNF492 MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  ZNF492 MUTATED    4  2
  ZNF492 WILD-TYPE 95 48
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               6              143 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
               2               48 
$`ZNF492 MUTATED`
TCGA-05-4430 TCGA-38-4625 TCGA-44-6777 TCGA-50-5049 TCGA-50-6593 TCGA-73-4670 
       25.02        47.61        32.45        48.82        11.05         0.46 

$`ZNF492 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZNF492 MUTATED ZNF492 WILD-TYPE 
            0.46             0.07 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
           48.82            85.32 
  ZNF492 MUTATED ZNF492 WILD-TYPE 
          28.735           13.150 
[1] "0.5 - 48.8 (28.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" "ZNF492 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE"   "ZNF492 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ZNF492 MUTATED" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" "ZNF492 WILD-TYPE" 
      TCGA-91-6836 
"ZNF492 WILD-TYPE" 
[1] "hr=" "1.5"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      5    3
  ZNF492 WILD-TYPE   88   76
        clus
vv       ZNF492 MUTATED ZNF492 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D41V4, continuous
D41V5, multiclass
D41V6, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              0                8
D41V7, multiclass
       clus
vv      ZNF492 MUTATED ZNF492 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              1               34
D41V8, multiclass
    clus
vv   ZNF492 MUTATED ZNF492 WILD-TYPE
  M0              6              131
  M1              1                8
  MX              1               21
D41V9, multiclass
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  I                6               82
  II               0               33
  III              1               38
  IV               1                8
D41V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      2    6
  ZNF492 WILD-TYPE   14  150
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  NO               2               14
  YES              6              150
D41V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF492 MUTATED      1    7
  ZNF492 WILD-TYPE   27  137
     clus
vv    ZNF492 MUTATED ZNF492 WILD-TYPE
  NO               1               27
  YES              7              137

Clustering(42) Variable = FERD3L MUTATION ANALYSIS
D42V1, survival
                  sevent
clus2               0  1
  FERD3L MUTATED    5  2
  FERD3L WILD-TYPE 94 48
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              142 
  FERD3L MUTATED FERD3L WILD-TYPE 
               2               48 
$`FERD3L MUTATED`
TCGA-05-4424 TCGA-38-4626 TCGA-44-5645 TCGA-50-5045 TCGA-50-5933 TCGA-64-1676 
       30.02        85.32         6.84        71.47        77.88        56.81 
TCGA-64-5781 
       39.52 

$`FERD3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         3.48         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FERD3L MUTATED FERD3L WILD-TYPE 
            6.84             0.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
           85.32            83.84 
  FERD3L MUTATED FERD3L WILD-TYPE 
           56.81            13.07 
[1] "6.8 - 85.3 (56.8)" "0.1 - 83.8 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6836 
"FERD3L WILD-TYPE" 
[1] "hr=" "5.6"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    3
  FERD3L WILD-TYPE   89   76
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D42V4, continuous
D42V5, multiclass
D42V6, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  T1              1               40
  T2              3              105
  T3              1               13
  T4              1                7
D42V7, multiclass
       clus
vv      FERD3L MUTATED FERD3L WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
D42V8, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D42V9, multiclass
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  I                4               84
  II               2               31
  III              1               38
  IV               0                9
D42V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      2    5
  FERD3L WILD-TYPE   14  151
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               2               14
  YES              5              151
D42V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      0    7
  FERD3L WILD-TYPE   28  137
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               0               28
  YES              7              137

Clustering(43) Variable = ADAMTS2 MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  ADAMTS2 MUTATED    8  4
  ADAMTS2 WILD-TYPE 91 46
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               12               137 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                4                46 
$`ADAMTS2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4427 TCGA-44-3396 TCGA-44-4112 
       19.92        37.02        24.03        26.01        10.22         4.60 
TCGA-44-6777 TCGA-50-6593 TCGA-55-6642 TCGA-64-1676 TCGA-73-4659 TCGA-91-6831 
       32.45        11.05        32.61        56.81        23.38         1.28 

$`ADAMTS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01         9.96        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 
       48.62        45.17         2.86         0.07         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
             1.28              0.07 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            56.81             85.32 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
           23.705            13.150 
[1] "1.3 - 56.8 (23.7)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6836 
"ADAMTS2 WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      6    8
  ADAMTS2 WILD-TYPE   87   71
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  FEMALE               6                87
  MALE                 8                71
D43V4, continuous
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D43V5, multiclass
D43V6, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  T1               2                39
  T2              11                97
  T3               0                14
  T4               1                 7
D43V7, multiclass
       clus
vv      ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               4                31
D43V8, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               3                19
D43V9, multiclass
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  I                 8                80
  II                2                31
  III               4                35
  IV                0                 9
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      1   13
  ADAMTS2 WILD-TYPE   15  143
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  NO                1                15
  YES              13               143
D43V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      2   12
  ADAMTS2 WILD-TYPE   26  132
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  NO                2                26
  YES              12               132

Clustering(44) Variable = TBX22 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  TBX22 MUTATED    7  4
  TBX22 WILD-TYPE 92 46
  TBX22 MUTATED TBX22 WILD-TYPE 
             11             138 
  TBX22 MUTATED TBX22 WILD-TYPE 
              4              46 
$`TBX22 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4628 TCGA-44-2656 TCGA-49-4514 TCGA-49-6743 
       19.92         9.96        49.02        19.10        43.20        12.13 
TCGA-50-5066 TCGA-50-6593 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
        9.76        11.05         0.10        30.44        39.52 

$`TBX22 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.75        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  TBX22 MUTATED TBX22 WILD-TYPE 
           0.10            0.07 
  TBX22 MUTATED TBX22 WILD-TYPE 
          49.02           85.32 
  TBX22 MUTATED TBX22 WILD-TYPE 
          19.10           13.51 
[1] "0.1 - 49.0 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX22 WILD-TYPE"   "TBX22 MUTATED" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE"   "TBX22 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX22 WILD-TYPE"   "TBX22 MUTATED"   "TBX22 MUTATED" "TBX22 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "TBX22 MUTATED" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-91-6836 
"TBX22 WILD-TYPE" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      5    7
  TBX22 WILD-TYPE   88   72
        clus
vv       TBX22 MUTATED TBX22 WILD-TYPE
  FEMALE             5              88
  MALE               7              72
D44V4, continuous
[1] "Remove cluster labels:" "TBX22 MUTATED"         
clus
  TBX22 MUTATED TBX22 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX22 WILD-TYPE" "TBX22 WILD-TYPE" "TBX22 WILD-TYPE" 
D44V5, multiclass
D44V6, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             2               6
D44V7, multiclass
       clus
vv      TBX22 MUTATED TBX22 WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             2              33
D44V8, multiclass
    clus
vv   TBX22 MUTATED TBX22 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D44V9, multiclass
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D44V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      0   12
  TBX22 WILD-TYPE   16  144
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  NO              0              16
  YES            12             144
D44V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX22 MUTATED      1   11
  TBX22 WILD-TYPE   27  133
     clus
vv    TBX22 MUTATED TBX22 WILD-TYPE
  NO              1              27
  YES            11             133

Clustering(45) Variable = CRIPAK MUTATION ANALYSIS
D45V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    5  2
  CRIPAK WILD-TYPE 94 48
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               7              142 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               2               48 
$`CRIPAK MUTATED`
TCGA-05-4396 TCGA-05-5425 TCGA-05-5715 TCGA-44-2668 TCGA-44-6148 TCGA-50-6594 
        9.96         2.96         2.04         8.09         3.12        12.16 
TCGA-64-5779 
       16.67 

$`CRIPAK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 
       24.00        15.02         1.02         4.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            2.04             0.07 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           16.67            85.32 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
            8.09            14.50 
[1] "2.0 - 16.7 (8.1)"  "0.1 - 85.3 (14.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6836 
"CRIPAK WILD-TYPE" 
[1] "hr=" "3.2"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      3    8
  CRIPAK WILD-TYPE   90   71
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              3               90
  MALE                8               71
D45V4, continuous
D45V5, multiclass
D45V6, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  T1              1               40
  T2              8              100
  T3              1               13
  T4              1                7
D45V7, multiclass
       clus
vv      CRIPAK MUTATED CRIPAK WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              2               33
D45V8, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0             11              126
  M1              0                9
  MX              0               22
D45V9, multiclass
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  I                7               81
  II               1               32
  III              3               36
  IV               0                9
D45V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      0   11
  CRIPAK WILD-TYPE   16  145
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               0               16
  YES             11              145
D45V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      1   10
  CRIPAK WILD-TYPE   27  134
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               1               27
  YES             10              134

Clustering(46) Variable = U2AF1 MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2              0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 94 49
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             143 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              1              49 
$`U2AF1 MUTATED`
TCGA-49-4505 TCGA-49-6743 TCGA-49-6744 TCGA-50-5941 TCGA-55-1595 TCGA-64-1680 
       14.07        12.13        12.99         9.37        48.62        37.02 

$`U2AF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  U2AF1 MUTATED U2AF1 WILD-TYPE 
           9.37            0.07 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          48.62           85.32 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          13.53           13.87 
[1] "9.4 - 48.6 (13.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6836 
"U2AF1 WILD-TYPE" 
[1] "hr=" "2.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      5    1
  U2AF1 WILD-TYPE   88   78
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  FEMALE             5              88
  MALE               1              78
D46V4, continuous
D46V5, multiclass
D46V6, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             0              14
  T4             0               8
D46V7, multiclass
       clus
vv      U2AF1 MUTATED U2AF1 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             3              32
D46V8, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  M0             3             134
  M1             1               8
  MX             2              20
D46V9, multiclass
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  I               1              87
  II              2              31
  III             2              37
  IV              1               8
D46V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      1    5
  U2AF1 WILD-TYPE   15  151
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  NO              1              15
  YES             5             151
D46V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      3    3
  U2AF1 WILD-TYPE   25  141
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  NO              3              25
  YES             3             141

Clustering(47) Variable = OR5D14 MUTATION ANALYSIS
D47V1, survival
                  sevent
clus2               0  1
  OR5D14 MUTATED    7  4
  OR5D14 WILD-TYPE 92 46
  OR5D14 MUTATED OR5D14 WILD-TYPE 
              11              138 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               4               46 
$`OR5D14 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-38-4627 TCGA-38-4631 TCGA-50-5045 
       19.92        29.95        25.02        37.71        11.64        71.47 
TCGA-50-5049 TCGA-50-5941 TCGA-50-6590 TCGA-64-5778 TCGA-73-4668 
       48.82         9.37        42.31        30.44        15.35 

$`OR5D14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4628 
        7.36         5.95         8.68        47.61        85.32        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR5D14 MUTATED OR5D14 WILD-TYPE 
            9.37             0.07 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
           71.47            85.32 
  OR5D14 MUTATED OR5D14 WILD-TYPE 
          29.950           12.825 
[1] "9.4 - 71.5 (29.9)" "0.1 - 85.3 (12.8)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" "OR5D14 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE"   "OR5D14 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-91-6836 
"OR5D14 WILD-TYPE" 
[1] "hr=" "1.5"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      7    6
  OR5D14 WILD-TYPE   86   73
        clus
vv       OR5D14 MUTATED OR5D14 WILD-TYPE
  FEMALE              7               86
  MALE                6               73
D47V4, continuous
[1] "Remove cluster labels:" "OR5D14 MUTATED"        
clus
  OR5D14 MUTATED OR5D14 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"OR5D14 WILD-TYPE" "OR5D14 WILD-TYPE" 
D47V5, multiclass
D47V6, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  T1              1               40
  T2             11               97
  T3              1               13
  T4              0                8
D47V7, multiclass
       clus
vv      OR5D14 MUTATED OR5D14 WILD-TYPE
  N0                 7               88
  N1                 4               33
  N2+N3              2               33
D47V8, multiclass
    clus
vv   OR5D14 MUTATED OR5D14 WILD-TYPE
  M0             13              124
  M1              0                9
  MX              0               22
D47V9, multiclass
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D47V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      2   11
  OR5D14 WILD-TYPE   14  145
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  NO               2               14
  YES             11              145
D47V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D14 MUTATED      1   12
  OR5D14 WILD-TYPE   27  132
     clus
vv    OR5D14 MUTATED OR5D14 WILD-TYPE
  NO               1               27
  YES             12              132

Clustering(48) Variable = HEATR7B2 MUTATION ANALYSIS
D48V1, survival
                    sevent
clus2                 0  1
  HEATR7B2 MUTATED   11  7
  HEATR7B2 WILD-TYPE 88 43
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                18                131 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
                 7                 43 
$`HEATR7B2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 
       19.92        37.02         9.96        14.93        30.02        26.01 
TCGA-38-4629 TCGA-44-3918 TCGA-44-6776 TCGA-49-4505 TCGA-49-4506 TCGA-49-6743 
       28.37         6.44        63.72        14.07        32.84        12.13 
TCGA-50-5044 TCGA-50-6590 TCGA-64-1676 TCGA-64-5781 TCGA-73-4677 TCGA-91-6831 
       20.48        42.31        56.81        39.52         1.25         1.28 

$`HEATR7B2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        46.72         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.15         0.36 

  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
              1.25               0.07 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
             63.72              85.32 
  HEATR7B2 MUTATED HEATR7B2 WILD-TYPE 
            23.245             12.660 
[1] "1.2 - 63.7 (23.2)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "HEATR7B2 MUTATED"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE"   "HEATR7B2 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"HEATR7B2 WILD-TYPE" "HEATR7B2 WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED     11    9
  HEATR7B2 WILD-TYPE   82   70
        clus
vv       HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  FEMALE               11                 82
  MALE                  9                 70
D48V4, continuous
D48V5, multiclass
D48V6, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  T1                4                 37
  T2               12                 96
  T3                2                 12
  T4                2                  6
D48V7, multiclass
       clus
vv      HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  N0                  14                 81
  N1                   5                 32
  N2+N3                1                 34
D48V8, multiclass
    clus
vv   HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  M0               17                120
  M1                0                  9
  MX                3                 19
D48V9, multiclass
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  I                 12                 76
  II                 5                 28
  III                3                 36
  IV                 0                  9
D48V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED      0   20
  HEATR7B2 WILD-TYPE   16  136
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  NO                 0                 16
  YES               20                136
D48V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  HEATR7B2 MUTATED      1   19
  HEATR7B2 WILD-TYPE   27  125
     clus
vv    HEATR7B2 MUTATED HEATR7B2 WILD-TYPE
  NO                 1                 27
  YES               19                125

Clustering(49) Variable = CARM1 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  CARM1 MUTATED    1  1
  CARM1 WILD-TYPE 98 49
  CARM1 MUTATED CARM1 WILD-TYPE 
              2             147 
  CARM1 MUTATED CARM1 WILD-TYPE 
              1              49 
$`CARM1 MUTATED`
TCGA-05-4384 TCGA-49-4490 
       14.01        12.66 

$`CARM1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CARM1 MUTATED CARM1 WILD-TYPE 
          12.66            0.07 
  CARM1 MUTATED CARM1 WILD-TYPE 
          14.01           85.32 
  CARM1 MUTATED CARM1 WILD-TYPE 
         13.335          13.870 
[1] "12.7 - 14.0 (13.3)" "0.1 - 85.3 (13.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE"   "CARM1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CARM1 WILD-TYPE"   "CARM1 MUTATED" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6836 
"CARM1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE"   "CARM1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CARM1 WILD-TYPE"   "CARM1 MUTATED" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6836 
"CARM1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE"   "CARM1 MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CARM1 WILD-TYPE"   "CARM1 MUTATED" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6836 
"CARM1 WILD-TYPE" 
[1] "Remove cluster labels:" "CARM1 MUTATED"         
clus
  CARM1 MUTATED CARM1 WILD-TYPE 
              2             147 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4390 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4418 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4424      TCGA-05-4426      TCGA-05-4427 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5429 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3396 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6543 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1676      TCGA-64-1677 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-67-3774      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-91-6828      TCGA-91-6829 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CARM1 WILD-TYPE" "CARM1 WILD-TYPE" "CARM1 WILD-TYPE" 
D49V2, continuous
D49V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CARM1 MUTATED      1    2
  CARM1 WILD-TYPE   92   77
        clus
vv       CARM1 MUTATED CARM1 WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D49V4, continuous
D49V5, multiclass
D49V6, multiclass
    clus
vv   CARM1 MUTATED CARM1 WILD-TYPE
  T1             1              40
  T2             1             107
  T3             1              13
  T4             0               8
D49V7, multiclass
       clus
vv      CARM1 MUTATED CARM1 WILD-TYPE
  N0                1              94
  N1                0              37
  N2+N3             2              33
D49V8, multiclass
    clus
vv   CARM1 MUTATED CARM1 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             0              22
D49V9, multiclass
     clus
vv    CARM1 MUTATED CARM1 WILD-TYPE
  I               1              87
  II              0              33
  III             2              37
  IV              0               9
D49V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CARM1 MUTATED      1    2
  CARM1 WILD-TYPE   15  154
     clus
vv    CARM1 MUTATED CARM1 WILD-TYPE
  NO              1              15
  YES             2             154
D49V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CARM1 MUTATED      1    2
  CARM1 WILD-TYPE   27  142
     clus
vv    CARM1 MUTATED CARM1 WILD-TYPE
  NO              1              27
  YES             2             142

Clustering(50) Variable = GBA3 MUTATION ANALYSIS
D50V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    3  5
  GBA3 WILD-TYPE 96 45
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            141 
  GBA3 MUTATED GBA3 WILD-TYPE 
             5             45 
$`GBA3 MUTATED`
TCGA-38-4631 TCGA-44-6145 TCGA-49-4514 TCGA-50-5931 TCGA-64-5778 TCGA-73-4658 
       11.64         3.35        43.20         8.78        30.44        52.57 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`GBA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       20.28        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GBA3 MUTATED GBA3 WILD-TYPE 
          1.25           0.07 
  GBA3 MUTATED GBA3 WILD-TYPE 
         52.57          85.32 
  GBA3 MUTATED GBA3 WILD-TYPE 
         21.04          13.87 
[1] "1.2 - 52.6 (21.0)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-91-6836 
"GBA3 WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      5    3
  GBA3 WILD-TYPE   88   76
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D50V4, continuous
[1] "Remove cluster labels:" "GBA3 MUTATED"          
clus
  GBA3 MUTATED GBA3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
D50V5, multiclass
D50V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            0             14
  T4            0              8
D50V7, multiclass
       clus
vv      GBA3 MUTATED GBA3 WILD-TYPE
  N0               8             87
  N1               0             37
  N2+N3            0             35
D50V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            7            130
  M1            0              9
  MX            1             21
D50V9, multiclass
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  I              8             80
  II             0             33
  III            0             39
  IV             0              9
D50V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   16  148
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             16
  YES            8            148
D50V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   28  136
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             28
  YES            8            136

Clustering(51) Variable = LRRTM4 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2               0  1
  LRRTM4 MUTATED   11  5
  LRRTM4 WILD-TYPE 88 45
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
              16              133 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
               5               45 
$`LRRTM4 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4432 TCGA-05-4434 TCGA-38-4631 TCGA-44-2659 
       38.07        19.92        25.02        15.02        11.64        17.39 
TCGA-44-6144 TCGA-44-6778 TCGA-49-4494 TCGA-49-6743 TCGA-55-1592 TCGA-64-1676 
        0.30        36.49        35.54        12.13        23.05        56.81 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-73-4677 
       83.84        16.67        39.52         1.25 

$`LRRTM4 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-5420 
       30.02        26.01        26.01        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        30.44         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
            0.30             0.07 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
           83.84            85.32 
  LRRTM4 MUTATED LRRTM4 WILD-TYPE 
          21.485           12.660 
[1] "0.3 - 83.8 (21.5)" "0.1 - 85.3 (12.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRTM4 MUTATED" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE"   "LRRTM4 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" "LRRTM4 WILD-TYPE" 
      TCGA-91-6836 
"LRRTM4 WILD-TYPE" 
[1] "hr=" "1.7"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      5   13
  LRRTM4 WILD-TYPE   88   66
        clus
vv       LRRTM4 MUTATED LRRTM4 WILD-TYPE
  FEMALE              5               88
  MALE               13               66
D51V4, continuous
D51V5, multiclass
D51V6, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  T1              5               36
  T2             11               97
  T3              1               13
  T4              1                7
D51V7, multiclass
       clus
vv      LRRTM4 MUTATED LRRTM4 WILD-TYPE
  N0                12               83
  N1                 3               34
  N2+N3              3               32
D51V8, multiclass
    clus
vv   LRRTM4 MUTATED LRRTM4 WILD-TYPE
  M0             15              122
  M1              1                8
  MX              2               20
D51V9, multiclass
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  I               12               76
  II               2               31
  III              3               36
  IV               1                8
D51V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      0   18
  LRRTM4 WILD-TYPE   16  138
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  NO               0               16
  YES             18              138
D51V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM4 MUTATED      3   15
  LRRTM4 WILD-TYPE   25  129
     clus
vv    LRRTM4 MUTATED LRRTM4 WILD-TYPE
  NO               3               25
  YES             15              129

Clustering(52) Variable = RIT1 MUTATION ANALYSIS
D52V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    6  2
  RIT1 WILD-TYPE 93 48
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            141 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             48 
$`RIT1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-44-6779 TCGA-49-4514 TCGA-55-1596 TCGA-73-4666 
       14.01         9.96        16.41        43.20        45.17        20.28 
TCGA-73-4675 TCGA-91-6836 
        1.32         0.36 

$`RIT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         0.46         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  RIT1 MUTATED RIT1 WILD-TYPE 
          0.36           0.07 
  RIT1 MUTATED RIT1 WILD-TYPE 
         45.17          85.32 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.21          13.15 
[1] "0.4 - 45.2 (15.2)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6836 
  "RIT1 MUTATED" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      4    4
  RIT1 WILD-TYPE   89   75
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D52V4, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D52V5, multiclass
D52V6, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            1             13
  T4            1              7
D52V7, multiclass
       clus
vv      RIT1 MUTATED RIT1 WILD-TYPE
  N0               3             92
  N1               4             33
  N2+N3            1             34
D52V8, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            5            132
  M1            1              8
  MX            2             20
D52V9, multiclass
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  I              2             86
  II             2             31
  III            3             36
  IV             1              8
D52V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   15  149
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             15
  YES            7            149
D52V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   27  137
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             27
  YES            7            137

Clustering(53) Variable = HGF MUTATION ANALYSIS
D53V1, survival
               sevent
clus2            0  1
  HGF MUTATED    9  4
  HGF WILD-TYPE 90 46
  HGF MUTATED HGF WILD-TYPE 
           13           136 
  HGF MUTATED HGF WILD-TYPE 
            4            46 
$`HGF MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-38-4632 
       19.92         9.96        29.95        30.02        26.01        44.61 
TCGA-44-2659 TCGA-44-3918 TCGA-44-4112 TCGA-49-4506 TCGA-50-5049 TCGA-64-1676 
       17.39         6.44         4.60        32.84        48.82        56.81 
TCGA-91-6829 
       41.33 

$`HGF WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  HGF MUTATED HGF WILD-TYPE 
         4.60          0.07 
  HGF MUTATED HGF WILD-TYPE 
        56.81         85.32 
  HGF MUTATED HGF WILD-TYPE 
       29.950        12.825 
[1] "4.6 - 56.8 (29.9)" "0.1 - 85.3 (12.8)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED"   "HGF MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "HGF MUTATED" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE"   "HGF MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HGF WILD-TYPE"   "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "HGF MUTATED" "HGF WILD-TYPE" "HGF WILD-TYPE" "HGF WILD-TYPE" 
[1] "hr=" "1.7"
D53V2, continuous
D53V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      5   11
  HGF WILD-TYPE   88   68
        clus
vv       HGF MUTATED HGF WILD-TYPE
  FEMALE           5            88
  MALE            11            68
D53V4, continuous
D53V5, multiclass
D53V6, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  T1           4            37
  T2          10            98
  T3           1            13
  T4           1             7
D53V7, multiclass
       clus
vv      HGF MUTATED HGF WILD-TYPE
  N0             10            85
  N1              6            31
  N2+N3           0            35
D53V8, multiclass
    clus
vv   HGF MUTATED HGF WILD-TYPE
  M0          14           123
  M1           1             8
  MX           1            21
D53V9, multiclass
     clus
vv    HGF MUTATED HGF WILD-TYPE
  I             9            79
  II            5            28
  III           1            38
  IV            1             8
D53V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      1   15
  HGF WILD-TYPE   15  141
     clus
vv    HGF MUTATED HGF WILD-TYPE
  NO            1            15
  YES          15           141
D53V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  HGF MUTATED      2   14
  HGF WILD-TYPE   26  130
     clus
vv    HGF MUTATED HGF WILD-TYPE
  NO            2            26
  YES          14           130

Clustering(54) Variable = OR5W2 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2              0  1
  OR5W2 MUTATED    5  4
  OR5W2 WILD-TYPE 94 46
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              9             140 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              4              46 
$`OR5W2 MUTATED`
TCGA-05-4382 TCGA-05-4415 TCGA-44-2665 TCGA-49-4507 TCGA-50-6592 TCGA-55-1595 
       19.92         2.96        13.15         8.81        25.51        48.62 
TCGA-64-1678 TCGA-73-4659 TCGA-91-6836 
       39.09        23.38         0.36 

$`OR5W2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 
       12.66        35.54        46.72        14.07        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  OR5W2 MUTATED OR5W2 WILD-TYPE 
           0.36            0.07 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          48.62           85.32 
  OR5W2 MUTATED OR5W2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 48.6 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE"   "OR5W2 MUTATED" "OR5W2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "OR5W2 MUTATED" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-91-6836 
  "OR5W2 MUTATED" 
[1] "hr=" "1.4"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      6    3
  OR5W2 WILD-TYPE   87   76
        clus
vv       OR5W2 MUTATED OR5W2 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D54V4, continuous
[1] "Remove cluster labels:" "OR5W2 MUTATED"         
clus
  OR5W2 MUTATED OR5W2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" "OR5W2 WILD-TYPE" 
D54V5, multiclass
D54V6, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
D54V7, multiclass
       clus
vv      OR5W2 MUTATED OR5W2 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             2              33
D54V8, multiclass
    clus
vv   OR5W2 MUTATED OR5W2 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D54V9, multiclass
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  I               4              84
  II              2              31
  III             3              36
  IV              0               9
D54V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      1    8
  OR5W2 WILD-TYPE   15  148
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  NO              1              15
  YES             8             148
D54V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5W2 MUTATED      3    6
  OR5W2 WILD-TYPE   25  138
     clus
vv    OR5W2 MUTATED OR5W2 WILD-TYPE
  NO              3              25
  YES             6             138

Clustering(55) Variable = THEMIS MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  THEMIS MUTATED    4  4
  THEMIS WILD-TYPE 95 46
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              141 
  THEMIS MUTATED THEMIS WILD-TYPE 
               4               46 
$`THEMIS MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-35-4123 TCGA-44-4112 TCGA-49-4501 TCGA-55-1592 
        9.96         8.98         5.95         4.60        46.72        23.05 
TCGA-67-3772 TCGA-73-4670 
        0.59         0.46 

$`THEMIS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  THEMIS MUTATED THEMIS WILD-TYPE 
            0.46             0.07 
  THEMIS MUTATED THEMIS WILD-TYPE 
           46.72            85.32 
  THEMIS MUTATED THEMIS WILD-TYPE 
           7.465           14.070 
[1] "0.5 - 46.7 (7.5)"  "0.1 - 85.3 (14.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6836 
"THEMIS WILD-TYPE" 
[1] "hr=" "2.7"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      4    6
  THEMIS WILD-TYPE   89   73
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D55V4, continuous
[1] "Remove cluster labels:" "THEMIS MUTATED"        
clus
  THEMIS MUTATED THEMIS WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
D55V5, multiclass
D55V6, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  T1              1               40
  T2              7              101
  T3              1               13
  T4              1                7
D55V7, multiclass
       clus
vv      THEMIS MUTATED THEMIS WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
D55V8, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  M0              9              128
  M1              1                8
  MX              0               22
D55V9, multiclass
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  I                7               81
  II               0               33
  III              2               37
  IV               1                8
D55V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      0   10
  THEMIS WILD-TYPE   16  146
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               0               16
  YES             10              146
D55V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      2    8
  THEMIS WILD-TYPE   26  136
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               2               26
  YES              8              136

Clustering(56) Variable = ZNF268 MUTATION ANALYSIS
D56V1, survival
                  sevent
clus2               0  1
  ZNF268 MUTATED    2  2
  ZNF268 WILD-TYPE 97 48
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               4              145 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2               48 
$`ZNF268 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-55-1592 
       24.03        19.10         6.44        23.05 

$`ZNF268 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZNF268 MUTATED ZNF268 WILD-TYPE 
            6.44             0.07 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           24.03            85.32 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
          21.075           13.150 
[1] "6.4 - 24.0 (21.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6836 
"ZNF268 WILD-TYPE" 
[1] "hr=" "2.2"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      1    4
  ZNF268 WILD-TYPE   92   75
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D56V4, continuous
D56V5, multiclass
D56V6, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              0                8
D56V7, multiclass
       clus
vv      ZNF268 MUTATED ZNF268 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              1               34
D56V8, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
D56V9, multiclass
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  I                3               85
  II               1               32
  III              0               39
  IV               1                8
D56V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   16  151
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               16
  YES              5              151
D56V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   28  139
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               28
  YES              5              139

Clustering(57) Variable = OR8H2 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  OR8H2 MUTATED    6  3
  OR8H2 WILD-TYPE 93 47
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              9             140 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              3              47 
$`OR8H2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-38-4629 TCGA-44-6145 TCGA-49-4507 
        9.96        26.01         7.36        28.37         3.35         8.81 
TCGA-50-5072 TCGA-64-5778 TCGA-64-5781 
        8.05        30.44        39.52 

$`OR8H2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR8H2 MUTATED OR8H2 WILD-TYPE 
           3.35            0.07 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
          39.52           85.32 
  OR8H2 MUTATED OR8H2 WILD-TYPE 
           9.96           13.94 
[1] "3.4 - 39.5 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE"   "OR8H2 MUTATED" "OR8H2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H2 MUTATED" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-91-6836 
"OR8H2 WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      4    7
  OR8H2 WILD-TYPE   89   72
        clus
vv       OR8H2 MUTATED OR8H2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D57V4, continuous
[1] "Remove cluster labels:" "OR8H2 MUTATED"         
clus
  OR8H2 MUTATED OR8H2 WILD-TYPE 
              2              10 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-71-6725 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"OR8H2 WILD-TYPE" "OR8H2 WILD-TYPE" 
D57V5, multiclass
D57V6, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             2              12
  T4             1               7
D57V7, multiclass
       clus
vv      OR8H2 MUTATED OR8H2 WILD-TYPE
  N0                6              89
  N1                4              33
  N2+N3             1              34
D57V8, multiclass
    clus
vv   OR8H2 MUTATED OR8H2 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
D57V9, multiclass
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  I               5              83
  II              3              30
  III             3              36
  IV              0               9
D57V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      2    9
  OR8H2 WILD-TYPE   14  147
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  NO              2              14
  YES             9             147
D57V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H2 MUTATED      1   10
  OR8H2 WILD-TYPE   27  134
     clus
vv    OR8H2 MUTATED OR8H2 WILD-TYPE
  NO              1              27
  YES            10             134

Clustering(58) Variable = ZIC4 MUTATION ANALYSIS
D58V1, survival
                sevent
clus2             0  1
  ZIC4 MUTATED    4  6
  ZIC4 WILD-TYPE 95 44
  ZIC4 MUTATED ZIC4 WILD-TYPE 
            10            139 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
             6             44 
$`ZIC4 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4632 TCGA-44-5643 TCGA-49-4486 TCGA-49-6743 
        9.96        29.95        44.61         3.48        76.21        12.13 
TCGA-50-5931 TCGA-55-1592 TCGA-64-5775 TCGA-64-5815 
        8.78        23.05         0.10         7.33 

$`ZIC4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZIC4 MUTATED ZIC4 WILD-TYPE 
          0.10           0.07 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
         76.21          85.32 
  ZIC4 MUTATED ZIC4 WILD-TYPE 
        11.045         14.010 
[1] "0.1 - 76.2 (11.0)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE"   "ZIC4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZIC4 WILD-TYPE"   "ZIC4 MUTATED" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" "ZIC4 WILD-TYPE" 
    TCGA-91-6836 
"ZIC4 WILD-TYPE" 
[1] "hr=" "1.7"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      3   10
  ZIC4 WILD-TYPE   90   69
        clus
vv       ZIC4 MUTATED ZIC4 WILD-TYPE
  FEMALE            3             90
  MALE             10             69
D58V4, continuous
D58V5, multiclass
D58V6, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  T1            2             39
  T2            8            100
  T3            1             13
  T4            2              6
D58V7, multiclass
       clus
vv      ZIC4 MUTATED ZIC4 WILD-TYPE
  N0               7             88
  N1               3             34
  N2+N3            3             32
D58V8, multiclass
    clus
vv   ZIC4 MUTATED ZIC4 WILD-TYPE
  M0            9            128
  M1            2              7
  MX            2             20
D58V9, multiclass
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  I              5             83
  II             2             31
  III            4             35
  IV             2              7
D58V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      1   12
  ZIC4 WILD-TYPE   15  144
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  NO             1             15
  YES           12            144
D58V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC4 MUTATED      3   10
  ZIC4 WILD-TYPE   25  134
     clus
vv    ZIC4 MUTATED ZIC4 WILD-TYPE
  NO             3             25
  YES           10            134

Clustering(59) Variable = DACH1 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  DACH1 MUTATED    7  3
  DACH1 WILD-TYPE 92 47
  DACH1 MUTATED DACH1 WILD-TYPE 
             10             139 
  DACH1 MUTATED DACH1 WILD-TYPE 
              3              47 
$`DACH1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4420 TCGA-49-4494 TCGA-49-6743 TCGA-55-1596 
        3.98        19.92        29.95        35.54        12.13        45.17 
TCGA-64-1678 TCGA-64-5778 TCGA-67-3771 TCGA-91-6829 
       39.09        30.44         1.97        41.33 

$`DACH1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  DACH1 MUTATED DACH1 WILD-TYPE 
           1.97            0.07 
  DACH1 MUTATED DACH1 WILD-TYPE 
          45.17           85.32 
  DACH1 MUTATED DACH1 WILD-TYPE 
         30.195          13.150 
[1] "2.0 - 45.2 (30.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACH1 WILD-TYPE"   "DACH1 MUTATED"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE"   "DACH1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DACH1 WILD-TYPE"   "DACH1 MUTATED" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-91-6836 
"DACH1 WILD-TYPE" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      4    7
  DACH1 WILD-TYPE   89   72
        clus
vv       DACH1 MUTATED DACH1 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D59V4, continuous
[1] "Remove cluster labels:" "DACH1 MUTATED"         
clus
  DACH1 MUTATED DACH1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"DACH1 WILD-TYPE" "DACH1 WILD-TYPE" "DACH1 WILD-TYPE" 
D59V5, multiclass
D59V6, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             2              12
  T4             0               8
D59V7, multiclass
       clus
vv      DACH1 MUTATED DACH1 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             2              33
D59V8, multiclass
    clus
vv   DACH1 MUTATED DACH1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             2              20
D59V9, multiclass
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  I               6              82
  II              2              31
  III             3              36
  IV              0               9
D59V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      0   11
  DACH1 WILD-TYPE   16  145
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  NO              0              16
  YES            11             145
D59V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH1 MUTATED      2    9
  DACH1 WILD-TYPE   26  135
     clus
vv    DACH1 MUTATED DACH1 WILD-TYPE
  NO              2              26
  YES             9             135

Clustering(60) Variable = OR5I1 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  OR5I1 MUTATED    5  3
  OR5I1 WILD-TYPE 94 47
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              8             141 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              3              47 
$`OR5I1 MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-05-4424 TCGA-44-6144 TCGA-49-6742 TCGA-50-5933 
        9.96         8.98        30.02         0.30        15.02        77.88 
TCGA-50-5941 TCGA-64-5781 
        9.37        39.52 

$`OR5I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21         4.60         3.48         6.84         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR5I1 MUTATED OR5I1 WILD-TYPE 
           0.30            0.07 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          77.88           85.32 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          12.49           13.87 
[1] "0.3 - 77.9 (12.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6836 
"OR5I1 WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      3    8
  OR5I1 WILD-TYPE   90   71
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D60V4, continuous
D60V5, multiclass
D60V6, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             3              11
  T4             2               6
D60V7, multiclass
       clus
vv      OR5I1 MUTATED OR5I1 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             4              31
D60V8, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D60V9, multiclass
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  I               3              85
  II              3              30
  III             5              34
  IV              0               9
D60V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      1   10
  OR5I1 WILD-TYPE   15  146
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              1              15
  YES            10             146
D60V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      2    9
  OR5I1 WILD-TYPE   26  135
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              2              26
  YES             9             135

Clustering(61) Variable = PLA2G4E MUTATION ANALYSIS
D61V1, survival
                   sevent
clus2                0  1
  PLA2G4E MUTATED    2  2
  PLA2G4E WILD-TYPE 97 48
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               145 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2                48 
$`PLA2G4E MUTATED`
TCGA-05-5420 TCGA-44-2659 TCGA-49-4501 TCGA-50-6594 
        1.02        17.39        46.72        12.16 

$`PLA2G4E WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
             1.02              0.07 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
            46.72             85.32 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
           14.775            13.870 
[1] "1.0 - 46.7 (14.8)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6836 
"PLA2G4E WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6836 
"PLA2G4E WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6836 
"PLA2G4E WILD-TYPE" 
[1] "hr=" "1.5"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PLA2G4E MUTATED      3    1
  PLA2G4E WILD-TYPE   90   78
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  FEMALE               3                90
  MALE                 1                78
D61V4, continuous
D61V5, multiclass
D61V6, multiclass
    clus
vv   PLA2G4E MUTATED PLA2G4E WILD-TYPE
  T1               1                40
  T2               2               106
  T3               1                13
  T4               0                 8
D61V7, multiclass
       clus
vv      PLA2G4E MUTATED PLA2G4E WILD-TYPE
  N0                  1                94
  N1                  1                36
  N2+N3               2                33
D61V8, multiclass
    clus
vv   PLA2G4E MUTATED PLA2G4E WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               0                22
D61V9, multiclass
     clus
vv    PLA2G4E MUTATED PLA2G4E WILD-TYPE
  I                 1                87
  II                1                32
  III               2                37
  IV                0                 9
D61V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PLA2G4E MUTATED      0    4
  PLA2G4E WILD-TYPE   16  152
     clus
vv    PLA2G4E MUTATED PLA2G4E WILD-TYPE
  NO                0                16
  YES               4               152
D61V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PLA2G4E MUTATED      1    3
  PLA2G4E WILD-TYPE   27  141
     clus
vv    PLA2G4E MUTATED PLA2G4E WILD-TYPE
  NO                1                27
  YES               3               141

Clustering(62) Variable = LPA MUTATION ANALYSIS
D62V1, survival
               sevent
clus2            0  1
  LPA MUTATED    8  5
  LPA WILD-TYPE 91 45
  LPA MUTATED LPA WILD-TYPE 
           13           136 
  LPA MUTATED LPA WILD-TYPE 
            5            45 
$`LPA MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4417 TCGA-35-4122 TCGA-44-2655 TCGA-44-2656 
       19.92         9.96        14.93         7.36        18.87        19.10 
TCGA-49-4490 TCGA-49-4494 TCGA-50-5933 TCGA-50-5941 TCGA-64-5775 TCGA-64-5781 
       12.66        35.54        77.88         9.37         0.10        39.52 
TCGA-73-4666 
       20.28 

$`LPA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2657 
       28.37        35.28        11.64        44.61         5.19        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       76.21        28.11        28.57        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       35.87        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       39.09        37.02        83.84        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LPA MUTATED LPA WILD-TYPE 
         0.10          0.07 
  LPA MUTATED LPA WILD-TYPE 
        77.88         85.32 
  LPA MUTATED LPA WILD-TYPE 
        18.87         13.15 
[1] "0.1 - 77.9 (18.9)" "0.1 - 85.3 (13.2)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE"   "LPA MUTATED" "LPA WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
[1] "hr=" "1"  
D62V2, continuous
D62V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  LPA MUTATED      6    7
  LPA WILD-TYPE   87   72
        clus
vv       LPA MUTATED LPA WILD-TYPE
  FEMALE           6            87
  MALE             7            72
D62V4, continuous
[1] "Remove cluster labels:" "LPA MUTATED"           
clus
  LPA MUTATED LPA WILD-TYPE 
            2            10 
   TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4668    TCGA-73-4676    TCGA-75-5122 
"LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" "LPA WILD-TYPE" 
D62V5, multiclass
D62V6, multiclass
    clus
vv   LPA MUTATED LPA WILD-TYPE
  T1           3            38
  T2           5           103
  T3           2            12
  T4           3             5
D62V7, multiclass
       clus
vv      LPA MUTATED LPA WILD-TYPE
  N0              8            87
  N1              1            36
  N2+N3           4            31
D62V8, multiclass
    clus
vv   LPA MUTATED LPA WILD-TYPE
  M0          12           125
  M1           1             8
  MX           0            22
D62V9, multiclass
     clus
vv    LPA MUTATED LPA WILD-TYPE
  I             6            82
  II            0            33
  III           6            33
  IV            1             8
D62V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  LPA MUTATED      3   10
  LPA WILD-TYPE   13  146
     clus
vv    LPA MUTATED LPA WILD-TYPE
  NO            3            13
  YES          10           146
D62V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  LPA MUTATED      2   11
  LPA WILD-TYPE   26  133
     clus
vv    LPA MUTATED LPA WILD-TYPE
  NO            2            26
  YES          11           133

Clustering(63) Variable = KCNT2 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  KCNT2 MUTATED   12  2
  KCNT2 WILD-TYPE 87 48
  KCNT2 MUTATED KCNT2 WILD-TYPE 
             14             135 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
              2              48 
$`KCNT2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 
       19.92        37.02         9.96        30.02        26.01        25.02 
TCGA-38-4632 TCGA-44-2668 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 
       44.61         8.09        43.20        15.02        12.13        48.82 
TCGA-64-1676 TCGA-91-6836 
       56.81         0.36 

$`KCNT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78        13.15         3.19        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        29.75        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  KCNT2 MUTATED KCNT2 WILD-TYPE 
           0.36            0.07 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
          56.81           85.32 
  KCNT2 MUTATED KCNT2 WILD-TYPE 
         25.515          12.990 
[1] "0.4 - 56.8 (25.5)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "KCNT2 MUTATED"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE"   "KCNT2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNT2 WILD-TYPE"   "KCNT2 MUTATED"   "KCNT2 MUTATED"   "KCNT2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "KCNT2 MUTATED" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" "KCNT2 WILD-TYPE" 
     TCGA-91-6836 
  "KCNT2 MUTATED" 
[1] "hr=" "3.6"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      6   11
  KCNT2 WILD-TYPE   87   68
        clus
vv       KCNT2 MUTATED KCNT2 WILD-TYPE
  FEMALE             6              87
  MALE              11              68
D63V4, continuous
D63V5, multiclass
D63V6, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  T1             3              38
  T2            11              97
  T3             2              12
  T4             1               7
D63V7, multiclass
       clus
vv      KCNT2 MUTATED KCNT2 WILD-TYPE
  N0               10              85
  N1                5              32
  N2+N3             2              33
D63V8, multiclass
    clus
vv   KCNT2 MUTATED KCNT2 WILD-TYPE
  M0            11             126
  M1             2               7
  MX             4              18
D63V9, multiclass
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  I               8              80
  II              5              28
  III             2              37
  IV              2               7
D63V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      1   16
  KCNT2 WILD-TYPE   15  140
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  NO              1              15
  YES            16             140
D63V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNT2 MUTATED      2   15
  KCNT2 WILD-TYPE   26  129
     clus
vv    KCNT2 MUTATED KCNT2 WILD-TYPE
  NO              2              26
  YES            15             129

Clustering(64) Variable = IL1RAPL1 MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                 0  1
  IL1RAPL1 MUTATED    5  5
  IL1RAPL1 WILD-TYPE 94 45
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                10                139 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 5                 45 
$`IL1RAPL1 MUTATED`
TCGA-38-4626 TCGA-38-4632 TCGA-44-2662 TCGA-44-2665 TCGA-44-6774 TCGA-49-4488 
       85.32        44.61        15.78        13.15         5.42        28.57 
TCGA-49-4505 TCGA-50-5931 TCGA-64-1677 TCGA-67-3774 
       14.07         8.78        20.65         0.59 

$`IL1RAPL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        2.04         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
              0.59               0.07 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
             85.32              83.84 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            14.925             13.150 
[1] "0.6 - 85.3 (14.9)" "0.1 - 83.8 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      8    3
  IL1RAPL1 WILD-TYPE   85   76
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  FEMALE                8                 85
  MALE                  3                 76
D64V4, continuous
[1] "Remove cluster labels:" "IL1RAPL1 MUTATED"      
clus
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
D64V5, multiclass
D64V6, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  T1                3                 38
  T2                8                100
  T3                0                 14
  T4                0                  8
D64V7, multiclass
       clus
vv      IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  N0                   5                 90
  N1                   4                 33
  N2+N3                2                 33
D64V8, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  M0                9                128
  M1                1                  8
  MX                1                 21
D64V9, multiclass
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  I                  4                 84
  II                 4                 29
  III                2                 37
  IV                 1                  8
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      0   11
  IL1RAPL1 WILD-TYPE   16  145
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 0                 16
  YES               11                145
D64V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      2    9
  IL1RAPL1 WILD-TYPE   26  135
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 2                 26
  YES                9                135

Clustering(65) Variable = C10ORF71 MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                 0  1
  C10ORF71 MUTATED    3  2
  C10ORF71 WILD-TYPE 96 48
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 5                144 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                 2                 48 
$`C10ORF71 MUTATED`
TCGA-05-4382 TCGA-38-4632 TCGA-50-6592 TCGA-64-5779 TCGA-67-3770 
       19.92        44.61        25.51        16.67         0.99 

$`C10ORF71 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
              0.99               0.07 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
             44.61              85.32 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
             19.92              13.15 
[1] "1.0 - 44.6 (19.9)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C10ORF71 WILD-TYPE"   "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "C10ORF71 MUTATED" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C10ORF71 WILD-TYPE" "C10ORF71 WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF71 MUTATED      2    4
  C10ORF71 WILD-TYPE   91   75
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  FEMALE                2                 91
  MALE                  4                 75
D65V4, continuous
D65V5, multiclass
D65V6, multiclass
    clus
vv   C10ORF71 MUTATED C10ORF71 WILD-TYPE
  T1                1                 40
  T2                5                103
  T3                0                 14
  T4                0                  8
D65V7, multiclass
       clus
vv      C10ORF71 MUTATED C10ORF71 WILD-TYPE
  N0                   4                 91
  N1                   1                 36
  N2+N3                1                 34
D65V8, multiclass
    clus
vv   C10ORF71 MUTATED C10ORF71 WILD-TYPE
  M0                5                132
  M1                1                  8
  MX                0                 22
D65V9, multiclass
     clus
vv    C10ORF71 MUTATED C10ORF71 WILD-TYPE
  I                  4                 84
  II                 0                 33
  III                1                 38
  IV                 1                  8
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF71 MUTATED      0    6
  C10ORF71 WILD-TYPE   16  150
     clus
vv    C10ORF71 MUTATED C10ORF71 WILD-TYPE
  NO                 0                 16
  YES                6                150
D65V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C10ORF71 MUTATED      1    5
  C10ORF71 WILD-TYPE   27  139
     clus
vv    C10ORF71 MUTATED C10ORF71 WILD-TYPE
  NO                 1                 27
  YES                5                139

Clustering(66) Variable = LRRIQ1 MUTATION ANALYSIS
D66V1, survival
                  sevent
clus2               0  1
  LRRIQ1 MUTATED   13  6
  LRRIQ1 WILD-TYPE 86 44
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
              19              130 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               6               44 
$`LRRIQ1 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-35-4123 TCGA-38-4626 TCGA-38-4628 
        9.96        24.03        14.93         5.95        85.32        49.02 
TCGA-38-4631 TCGA-44-3396 TCGA-44-3398 TCGA-44-6145 TCGA-49-6743 TCGA-50-5049 
       11.64        10.22         8.32         3.35        12.13        48.82 
TCGA-50-5066 TCGA-50-5939 TCGA-50-5941 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
        9.76        15.12         9.37        42.31        39.09        39.52 
TCGA-91-6836 
        0.36 

$`LRRIQ1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 
        7.36         8.68        47.61        37.71        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 
        3.39        15.78        13.15         3.19         8.09         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.78        35.87        77.88        21.47         8.45         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
            0.36             0.07 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           85.32            83.84 
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
           12.13            13.94 
[1] "0.4 - 85.3 (12.1)" "0.1 - 83.8 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "LRRIQ1 MUTATED"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE"   "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "LRRIQ1 MUTATED" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-91-6836 
  "LRRIQ1 MUTATED" 
[1] "hr=" "1.4"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED     14    7
  LRRIQ1 WILD-TYPE   79   72
        clus
vv       LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  FEMALE             14               79
  MALE                7               72
D66V4, continuous
[1] "Remove cluster labels:" "LRRIQ1 MUTATED"        
clus
  LRRIQ1 MUTATED LRRIQ1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" "LRRIQ1 WILD-TYPE" 
D66V5, multiclass
D66V6, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  T1              4               37
  T2             15               93
  T3              1               13
  T4              1                7
D66V7, multiclass
       clus
vv      LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  N0                14               81
  N1                 3               34
  N2+N3              4               31
D66V8, multiclass
    clus
vv   LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  M0             19              118
  M1              0                9
  MX              2               20
D66V9, multiclass
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  I               12               76
  II               4               29
  III              5               34
  IV               0                9
D66V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED      1   20
  LRRIQ1 WILD-TYPE   15  136
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  NO               1               15
  YES             20              136
D66V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ1 MUTATED      3   18
  LRRIQ1 WILD-TYPE   25  126
     clus
vv    LRRIQ1 MUTATED LRRIQ1 WILD-TYPE
  NO               3               25
  YES             18              126

Clustering(67) Variable = SEC14L1 MUTATION ANALYSIS
D67V1, survival
                   sevent
clus2                0  1
  SEC14L1 MUTATED    2  1
  SEC14L1 WILD-TYPE 97 49
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                3               146 
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
                1                49 
$`SEC14L1 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-6775 
        9.96        25.02         2.70 

$`SEC14L1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 
        3.35         9.93         7.76         3.12         5.42        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
             2.70              0.07 
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
            25.02             85.32 
  SEC14L1 MUTATED SEC14L1 WILD-TYPE 
             9.96             13.94 
[1] "2.7 - 25.0 (10.0)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6836 
"SEC14L1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6836 
"SEC14L1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SEC14L1 WILD-TYPE"   "SEC14L1 MUTATED" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" "SEC14L1 WILD-TYPE" 
       TCGA-91-6836 
"SEC14L1 WILD-TYPE" 
[1] "hr=" "2.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SEC14L1 MUTATED      1    3
  SEC14L1 WILD-TYPE   92   76
        clus
vv       SEC14L1 MUTATED SEC14L1 WILD-TYPE
  FEMALE               1                92
  MALE                 3                76
D67V4, continuous
D67V5, multiclass
D67V6, multiclass
    clus
vv   SEC14L1 MUTATED SEC14L1 WILD-TYPE
  T1               1                40
  T2               2               106
  T3               0                14
  T4               1                 7
D67V7, multiclass
       clus
vv      SEC14L1 MUTATED SEC14L1 WILD-TYPE
  N0                  1                94
  N1                  3                34
  N2+N3               0                35
D67V8, multiclass
    clus
vv   SEC14L1 MUTATED SEC14L1 WILD-TYPE
  M0               3               134
  M1               0                 9
  MX               1                21
D67V9, multiclass
     clus
vv    SEC14L1 MUTATED SEC14L1 WILD-TYPE
  I                 1                87
  II                2                31
  III               1                38
  IV                0                 9
D67V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SEC14L1 MUTATED      0    4
  SEC14L1 WILD-TYPE   16  152
     clus
vv    SEC14L1 MUTATED SEC14L1 WILD-TYPE
  NO                0                16
  YES               4               152
D67V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SEC14L1 MUTATED      0    4
  SEC14L1 WILD-TYPE   28  140
     clus
vv    SEC14L1 MUTATED SEC14L1 WILD-TYPE
  NO                0                28
  YES               4               140

Clustering(68) Variable = SPANXN2 MUTATION ANALYSIS
D68V1, survival
                   sevent
clus2                0  1
  SPANXN2 MUTATED    3  3
  SPANXN2 WILD-TYPE 96 47
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                6               143 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
                3                47 
$`SPANXN2 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-44-3918 TCGA-55-1592 
       37.02         9.96        24.03        26.01         6.44        23.05 

$`SPANXN2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
             6.44              0.07 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            37.02             85.32 
  SPANXN2 MUTATED SPANXN2 WILD-TYPE 
            23.54             13.15 
[1] "6.4 - 37.0 (23.5)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SPANXN2 MUTATED"   "SPANXN2 MUTATED"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE"   "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SPANXN2 MUTATED" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" "SPANXN2 WILD-TYPE" 
       TCGA-91-6836 
"SPANXN2 WILD-TYPE" 
[1] "hr=" "1.7"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      3    4
  SPANXN2 WILD-TYPE   90   75
        clus
vv       SPANXN2 MUTATED SPANXN2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D68V4, continuous
D68V5, multiclass
D68V6, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               0                14
  T4               1                 7
D68V7, multiclass
       clus
vv      SPANXN2 MUTATED SPANXN2 WILD-TYPE
  N0                  4                91
  N1                  3                34
  N2+N3               0                35
D68V8, multiclass
    clus
vv   SPANXN2 MUTATED SPANXN2 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
D68V9, multiclass
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D68V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      0    7
  SPANXN2 WILD-TYPE   16  149
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  NO                0                16
  YES               7               149
D68V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN2 MUTATED      0    7
  SPANXN2 WILD-TYPE   28  137
     clus
vv    SPANXN2 MUTATED SPANXN2 WILD-TYPE
  NO                0                28
  YES               7               137

Clustering(69) Variable = WDR49 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  WDR49 MUTATED    4  3
  WDR49 WILD-TYPE 95 47
  WDR49 MUTATED WDR49 WILD-TYPE 
              7             142 
  WDR49 MUTATED WDR49 WILD-TYPE 
              3              47 
$`WDR49 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-49-6743 TCGA-50-5045 TCGA-50-6590 TCGA-73-4666 
        9.96        25.02        12.13        71.47        42.31        20.28 
TCGA-73-4670 
        0.46 

$`WDR49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  WDR49 MUTATED WDR49 WILD-TYPE 
           0.46            0.07 
  WDR49 MUTATED WDR49 WILD-TYPE 
          71.47           85.32 
  WDR49 MUTATED WDR49 WILD-TYPE 
          20.28           13.51 
[1] "0.5 - 71.5 (20.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE"   "WDR49 MUTATED" "WDR49 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "WDR49 MUTATED" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-91-6836 
"WDR49 WILD-TYPE" 
[1] "hr=" "1"  
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      6    3
  WDR49 WILD-TYPE   87   76
        clus
vv       WDR49 MUTATED WDR49 WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D69V4, continuous
[1] "Remove cluster labels:" "WDR49 MUTATED"         
clus
  WDR49 MUTATED WDR49 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"WDR49 WILD-TYPE" "WDR49 WILD-TYPE" "WDR49 WILD-TYPE" 
D69V5, multiclass
D69V6, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             1               7
D69V7, multiclass
       clus
vv      WDR49 MUTATED WDR49 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             1              34
D69V8, multiclass
    clus
vv   WDR49 MUTATED WDR49 WILD-TYPE
  M0             6             131
  M1             2               7
  MX             1              21
D69V9, multiclass
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              2               7
D69V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      2    7
  WDR49 WILD-TYPE   14  149
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  NO              2              14
  YES             7             149
D69V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  WDR49 MUTATED      3    6
  WDR49 WILD-TYPE   25  138
     clus
vv    WDR49 MUTATED WDR49 WILD-TYPE
  NO              3              25
  YES             6             138

Clustering(70) Variable = OR52E4 MUTATION ANALYSIS
D70V1, survival
                  sevent
clus2               0  1
  OR52E4 MUTATED    3  1
  OR52E4 WILD-TYPE 96 49
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               4              145 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
               1               49 
$`OR52E4 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-55-5899 TCGA-64-1678 
       19.92        24.03         2.86        39.09 

$`OR52E4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR52E4 MUTATED OR52E4 WILD-TYPE 
            2.86             0.07 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
           39.09            85.32 
  OR52E4 MUTATED OR52E4 WILD-TYPE 
          21.975           13.150 
[1] "2.9 - 39.1 (22.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR52E4 MUTATED" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE"   "OR52E4 MUTATED" "OR52E4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" "OR52E4 WILD-TYPE" 
      TCGA-91-6836 
"OR52E4 WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      1    5
  OR52E4 WILD-TYPE   92   74
        clus
vv       OR52E4 MUTATED OR52E4 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D70V4, continuous
D70V5, multiclass
D70V6, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D70V7, multiclass
       clus
vv      OR52E4 MUTATED OR52E4 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              1               34
D70V8, multiclass
    clus
vv   OR52E4 MUTATED OR52E4 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D70V9, multiclass
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  I                3               85
  II               2               31
  III              1               38
  IV               0                9
D70V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      0    6
  OR52E4 WILD-TYPE   16  150
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  NO               0               16
  YES              6              150
D70V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52E4 MUTATED      1    5
  OR52E4 WILD-TYPE   27  139
     clus
vv    OR52E4 MUTATED OR52E4 WILD-TYPE
  NO               1               27
  YES              5              139

Clustering(71) Variable = TBX15 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  TBX15 MUTATED    4  6
  TBX15 WILD-TYPE 95 44
  TBX15 MUTATED TBX15 WILD-TYPE 
             10             139 
  TBX15 MUTATED TBX15 WILD-TYPE 
              6              44 
$`TBX15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4630 TCGA-38-4632 TCGA-44-2666 
        9.96        47.05        26.01        35.28        44.61         3.19 
TCGA-49-4488 TCGA-64-5779 TCGA-73-4662 TCGA-91-6829 
       28.57        16.67        29.95        41.33 

$`TBX15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX15 MUTATED TBX15 WILD-TYPE 
           3.19            0.07 
  TBX15 MUTATED TBX15 WILD-TYPE 
          47.05           85.32 
  TBX15 MUTATED TBX15 WILD-TYPE 
          29.26           12.99 
[1] "3.2 - 47.0 (29.3)" "0.1 - 85.3 (13.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-91-6836 
"TBX15 WILD-TYPE" 
[1] "hr=" "1.3"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      5    6
  TBX15 WILD-TYPE   88   73
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  FEMALE             5              88
  MALE               6              73
D71V4, continuous
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D71V5, multiclass
D71V6, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             3               5
D71V7, multiclass
       clus
vv      TBX15 MUTATED TBX15 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
D71V8, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  M0             7             130
  M1             1               8
  MX             2              20
D71V9, multiclass
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  I               5              83
  II              1              32
  III             4              35
  IV              1               8
D71V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      1   10
  TBX15 WILD-TYPE   15  146
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              1              15
  YES            10             146
D71V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      2    9
  TBX15 WILD-TYPE   26  135
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              2              26
  YES             9             135

Clustering(72) Variable = CXORF59 MUTATION ANALYSIS
D72V1, survival
                   sevent
clus2                0  1
  CXORF59 MUTATED    6  0
  CXORF59 WILD-TYPE 93 50
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                6               143 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                0                50 
$`CXORF59 MUTATED`
TCGA-05-4382 TCGA-05-4430 TCGA-05-5420 TCGA-35-5375 TCGA-49-6744 TCGA-55-1595 
       19.92        25.02         1.02         8.68        12.99        48.62 

$`CXORF59 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CXORF59 MUTATED CXORF59 WILD-TYPE 
             1.02              0.07 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
            48.62             85.32 
  CXORF59 MUTATED CXORF59 WILD-TYPE 
           16.455            13.870 
[1] "1.0 - 48.6 (16.5)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "CXORF59 MUTATED" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE"   "CXORF59 MUTATED" "CXORF59 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-91-6836 
"CXORF59 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      5    3
  CXORF59 WILD-TYPE   88   76
        clus
vv       CXORF59 MUTATED CXORF59 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D72V4, continuous
[1] "Remove cluster labels:" "CXORF59 MUTATED"       
clus
  CXORF59 MUTATED CXORF59 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" "CXORF59 WILD-TYPE" 
D72V5, multiclass
D72V6, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  T1               1                40
  T2               6               102
  T3               1                13
  T4               0                 8
D72V7, multiclass
       clus
vv      CXORF59 MUTATED CXORF59 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               3                32
D72V8, multiclass
    clus
vv   CXORF59 MUTATED CXORF59 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               1                21
D72V9, multiclass
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  I                 4                84
  II                1                32
  III               3                36
  IV                0                 9
D72V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      0    8
  CXORF59 WILD-TYPE   16  148
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  NO                0                16
  YES               8               148
D72V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF59 MUTATED      1    7
  CXORF59 WILD-TYPE   27  137
     clus
vv    CXORF59 MUTATED CXORF59 WILD-TYPE
  NO                1                27
  YES               7               137

Clustering(73) Variable = CPXCR1 MUTATION ANALYSIS
D73V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    7  0
  CPXCR1 WILD-TYPE 92 50
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               7              142 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               50 
$`CPXCR1 MUTATED`
TCGA-05-4427 TCGA-44-4112 TCGA-44-6774 TCGA-44-6778 TCGA-64-1678 TCGA-67-3771 
       26.01         4.60         5.42        36.49        39.09         1.97 
TCGA-73-4662 
       29.95 

$`CPXCR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        0.69        13.87         2.01        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            1.97             0.07 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           39.09            85.32 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           26.01            13.51 
[1] "2.0 - 39.1 (26.0)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-91-6836 
"CPXCR1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      8    2
  CPXCR1 WILD-TYPE   85   77
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              8               85
  MALE                2               77
D73V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
D73V5, multiclass
D73V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
D73V7, multiclass
       clus
vv      CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
D73V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
D73V9, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                6               82
  II               3               30
  III              1               38
  IV               0                9
D73V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    9
  CPXCR1 WILD-TYPE   15  147
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               1               15
  YES              9              147
D73V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      3    7
  CPXCR1 WILD-TYPE   25  137
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               3               25
  YES              7              137

Clustering(74) Variable = MYL10 MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2              0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 96 48
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             144 
  MYL10 MUTATED MYL10 WILD-TYPE 
              2              48 
$`MYL10 MUTATED`
TCGA-05-4250 TCGA-05-4398 TCGA-05-4418 TCGA-05-4430 TCGA-73-4676 
        3.98        47.05         8.98        25.02         4.01 

$`MYL10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MYL10 MUTATED MYL10 WILD-TYPE 
           3.98            0.07 
  MYL10 MUTATED MYL10 WILD-TYPE 
          47.05           85.32 
  MYL10 MUTATED MYL10 WILD-TYPE 
           8.98           13.94 
[1] "4.0 - 47.0 (9.0)"  "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      3    2
  MYL10 WILD-TYPE   90   77
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D74V4, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D74V5, multiclass
D74V6, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  T1             0              41
  T2             2             106
  T3             2              12
  T4             1               7
D74V7, multiclass
       clus
vv      MYL10 MUTATED MYL10 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             2              33
D74V8, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D74V9, multiclass
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  I               1              87
  II              1              32
  III             3              36
  IV              0               9
D74V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   15  152
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              15
  YES             4             152
D74V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   27  140
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              27
  YES             4             140

Clustering(75) Variable = PCK1 MUTATION ANALYSIS
D75V1, survival
                sevent
clus2             0  1
  PCK1 MUTATED    2  5
  PCK1 WILD-TYPE 97 45
  PCK1 MUTATED PCK1 WILD-TYPE 
             7            142 
  PCK1 MUTATED PCK1 WILD-TYPE 
             5             45 
$`PCK1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-38-4632 TCGA-50-5049 TCGA-64-1677 TCGA-64-5775 
        3.98         9.96        44.61        48.82        20.65         0.10 
TCGA-67-3771 
        1.97 

$`PCK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PCK1 MUTATED PCK1 WILD-TYPE 
          0.10           0.07 
  PCK1 MUTATED PCK1 WILD-TYPE 
         48.82          85.32 
  PCK1 MUTATED PCK1 WILD-TYPE 
          9.96          13.94 
[1] "0.1 - 48.8 (10.0)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6836 
"PCK1 WILD-TYPE" 
[1] "hr=" "2.4"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      4    5
  PCK1 WILD-TYPE   89   74
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  FEMALE            4             89
  MALE              5             74
D75V4, continuous
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
D75V5, multiclass
D75V6, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  T1            1             40
  T2            5            103
  T3            1             13
  T4            2              6
D75V7, multiclass
       clus
vv      PCK1 MUTATED PCK1 WILD-TYPE
  N0               5             90
  N1               3             34
  N2+N3            1             34
D75V8, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  M0            7            130
  M1            2              7
  MX            0             22
D75V9, multiclass
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  I              3             85
  II             0             33
  III            4             35
  IV             2              7
D75V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      1    8
  PCK1 WILD-TYPE   15  148
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  NO             1             15
  YES            8            148
D75V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      0    9
  PCK1 WILD-TYPE   28  135
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  NO             0             28
  YES            9            135

Clustering(76) Variable = OR5F1 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2              0  1
  OR5F1 MUTATED    8  2
  OR5F1 WILD-TYPE 91 48
  OR5F1 MUTATED OR5F1 WILD-TYPE 
             10             139 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              2              48 
$`OR5F1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-35-4122 TCGA-44-2659 TCGA-44-4112 TCGA-49-4514 
        9.96        26.01         7.36        17.39         4.60        43.20 
TCGA-50-5049 TCGA-50-6590 TCGA-64-1678 TCGA-64-5781 
       48.82        42.31        39.09        39.52 

$`OR5F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5F1 MUTATED OR5F1 WILD-TYPE 
           4.60            0.07 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          48.82           85.32 
  OR5F1 MUTATED OR5F1 WILD-TYPE 
          32.55           13.15 
[1] "4.6 - 48.8 (32.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE"   "OR5F1 MUTATED" "OR5F1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5F1 MUTATED" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-91-6836 
"OR5F1 WILD-TYPE" 
[1] "hr=" "2.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      7    5
  OR5F1 WILD-TYPE   86   74
        clus
vv       OR5F1 MUTATED OR5F1 WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D76V4, continuous
[1] "Remove cluster labels:" "OR5F1 MUTATED"         
clus
  OR5F1 MUTATED OR5F1 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" "OR5F1 WILD-TYPE" 
D76V5, multiclass
D76V6, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             1              13
  T4             1               7
D76V7, multiclass
       clus
vv      OR5F1 MUTATED OR5F1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             0              35
D76V8, multiclass
    clus
vv   OR5F1 MUTATED OR5F1 WILD-TYPE
  M0            12             125
  M1             0               9
  MX             0              22
D76V9, multiclass
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  I               8              80
  II              3              30
  III             1              38
  IV              0               9
D76V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      1   11
  OR5F1 WILD-TYPE   15  145
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  NO              1              15
  YES            11             145
D76V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5F1 MUTATED      3    9
  OR5F1 WILD-TYPE   25  135
     clus
vv    OR5F1 MUTATED OR5F1 WILD-TYPE
  NO              3              25
  YES             9             135

Clustering(77) Variable = INHBA MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    6  3
  INHBA WILD-TYPE 93 47
  INHBA MUTATED INHBA WILD-TYPE 
              9             140 
  INHBA MUTATED INHBA WILD-TYPE 
              3              47 
$`INHBA MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-44-3396 TCGA-44-6774 TCGA-50-5045 TCGA-50-5051 
       47.05         8.98        10.22         5.42        71.47        14.96 
TCGA-64-5778 TCGA-64-5781 TCGA-73-4677 
       30.44        39.52         1.25 

$`INHBA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       24.03         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  INHBA MUTATED INHBA WILD-TYPE 
           1.25            0.07 
  INHBA MUTATED INHBA WILD-TYPE 
          71.47           85.32 
  INHBA MUTATED INHBA WILD-TYPE 
          14.96           13.51 
[1] "1.2 - 71.5 (15.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-91-6836 
"INHBA WILD-TYPE" 
[1] "hr=" "1.4"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      6    3
  INHBA WILD-TYPE   87   76
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             6              87
  MALE               3              76
D77V4, continuous
[1] "Remove cluster labels:" "INHBA MUTATED"         
clus
  INHBA MUTATED INHBA WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
D77V5, multiclass
D77V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             1               7
D77V7, multiclass
       clus
vv      INHBA MUTATED INHBA WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             5              30
D77V8, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
D77V9, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D77V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    7
  INHBA WILD-TYPE   14  149
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  NO              2              14
  YES             7             149
D77V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      1    8
  INHBA WILD-TYPE   27  136
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  NO              1              27
  YES             8             136

Clustering(78) Variable = EPHB1 MUTATION ANALYSIS
D78V1, survival
                 sevent
clus2              0  1
  EPHB1 MUTATED   13  4
  EPHB1 WILD-TYPE 86 46
  EPHB1 MUTATED EPHB1 WILD-TYPE 
             17             132 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              4              46 
$`EPHB1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96        47.05        29.95        30.02        26.01 
TCGA-38-4625 TCGA-44-3918 TCGA-44-6777 TCGA-49-6743 TCGA-50-5049 TCGA-50-5072 
       47.61         6.44        32.45        12.13        48.82         8.05 
TCGA-55-5899 TCGA-67-3771 TCGA-73-4658 TCGA-73-4668 TCGA-73-4677 
        2.86         1.97        52.57        15.35         1.25 

$`EPHB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 TCGA-05-4430 
       20.05         2.96        14.93         8.98        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  EPHB1 MUTATED EPHB1 WILD-TYPE 
           1.25            0.07 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          52.57           85.32 
  EPHB1 MUTATED EPHB1 WILD-TYPE 
          19.92           13.15 
[1] "1.2 - 52.6 (19.9)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHB1 WILD-TYPE"   "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "EPHB1 MUTATED" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE"   "EPHB1 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-91-6836 
"EPHB1 WILD-TYPE" 
[1] "hr=" "1.8"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      9    9
  EPHB1 WILD-TYPE   84   70
        clus
vv       EPHB1 MUTATED EPHB1 WILD-TYPE
  FEMALE             9              84
  MALE               9              70
D78V4, continuous
[1] "Remove cluster labels:" "EPHB1 MUTATED"         
clus
  EPHB1 MUTATED EPHB1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" "EPHB1 WILD-TYPE" 
D78V5, multiclass
D78V6, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  T1             4              37
  T2            11              97
  T3             1              13
  T4             2               6
D78V7, multiclass
       clus
vv      EPHB1 MUTATED EPHB1 WILD-TYPE
  N0               10              85
  N1                4              33
  N2+N3             3              32
D78V8, multiclass
    clus
vv   EPHB1 MUTATED EPHB1 WILD-TYPE
  M0            16             121
  M1             0               9
  MX             2              20
D78V9, multiclass
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  I              11              77
  II              3              30
  III             4              35
  IV              0               9
D78V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      3   15
  EPHB1 WILD-TYPE   13  141
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  NO              3              13
  YES            15             141
D78V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB1 MUTATED      2   16
  EPHB1 WILD-TYPE   26  128
     clus
vv    EPHB1 MUTATED EPHB1 WILD-TYPE
  NO              2              26
  YES            16             128

Clustering(79) Variable = FAM71B MUTATION ANALYSIS
D79V1, survival
                  sevent
clus2               0  1
  FAM71B MUTATED    9  5
  FAM71B WILD-TYPE 90 45
  FAM71B MUTATED FAM71B WILD-TYPE 
              14              135 
  FAM71B MUTATED FAM71B WILD-TYPE 
               5               45 
$`FAM71B MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-35-3615 TCGA-38-4625 TCGA-44-6776 TCGA-49-4501 
       37.02         9.96         0.46        47.61        63.72        46.72 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6745 TCGA-50-6593 TCGA-55-1595 TCGA-64-5775 
       29.46        43.20         4.93        11.05        48.62         0.10 
TCGA-64-5815 TCGA-91-6836 
        7.33         0.36 

$`FAM71B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81        29.75        15.02        12.13 
TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       12.26        11.47        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       37.02        83.84        30.44        16.67        39.52         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  FAM71B MUTATED FAM71B WILD-TYPE 
            0.10             0.07 
  FAM71B MUTATED FAM71B WILD-TYPE 
           63.72            85.32 
  FAM71B MUTATED FAM71B WILD-TYPE 
          20.255           13.870 
[1] "0.1 - 63.7 (20.3)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "FAM71B MUTATED"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-91-6836 
  "FAM71B MUTATED" 
[1] "hr=" "1.3"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      9    5
  FAM71B WILD-TYPE   84   74
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D79V4, continuous
D79V5, multiclass
D79V6, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  T1              4               37
  T2              8              100
  T3              0               14
  T4              2                6
D79V7, multiclass
       clus
vv      FAM71B MUTATED FAM71B WILD-TYPE
  N0                 9               86
  N1                 3               34
  N2+N3              2               33
D79V8, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  M0             11              126
  M1              0                9
  MX              3               19
D79V9, multiclass
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  I                8               80
  II               2               31
  III              4               35
  IV               0                9
D79V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      0   14
  FAM71B WILD-TYPE   16  142
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  NO               0               16
  YES             14              142
D79V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      2   12
  FAM71B WILD-TYPE   26  132
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  NO               2               26
  YES             12              132

Clustering(80) Variable = OR8H3 MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  OR8H3 MUTATED    4  4
  OR8H3 WILD-TYPE 95 46
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              8             141 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
              4              46 
$`OR8H3 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4432 TCGA-38-4629 TCGA-44-3918 TCGA-50-5933 
        9.96        47.05        25.02        28.37         6.44        77.88 
TCGA-50-5939 TCGA-64-5781 
       15.12        39.52 

$`OR8H3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR8H3 MUTATED OR8H3 WILD-TYPE 
           6.44            0.07 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
          77.88           85.32 
  OR8H3 MUTATED OR8H3 WILD-TYPE 
         26.695          13.150 
[1] "6.4 - 77.9 (26.7)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8H3 WILD-TYPE"   "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8H3 MUTATED" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" "OR8H3 WILD-TYPE" 
     TCGA-91-6836 
"OR8H3 WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      4    7
  OR8H3 WILD-TYPE   89   72
        clus
vv       OR8H3 MUTATED OR8H3 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D80V4, continuous
D80V5, multiclass
D80V6, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             2              12
  T4             3               5
D80V7, multiclass
       clus
vv      OR8H3 MUTATED OR8H3 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
D80V8, multiclass
    clus
vv   OR8H3 MUTATED OR8H3 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             0              22
D80V9, multiclass
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  I               4              84
  II              3              30
  III             4              35
  IV              0               9
D80V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      1   10
  OR8H3 WILD-TYPE   15  146
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  NO              1              15
  YES            10             146
D80V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H3 MUTATED      0   11
  OR8H3 WILD-TYPE   28  133
     clus
vv    OR8H3 MUTATED OR8H3 WILD-TYPE
  NO              0              28
  YES            11             133

Clustering(81) Variable = ADAMTS16 MUTATION ANALYSIS
D81V1, survival
                    sevent
clus2                 0  1
  ADAMTS16 MUTATED   13  7
  ADAMTS16 WILD-TYPE 86 43
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                20                129 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
                 7                 43 
$`ADAMTS16 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 
        9.96        24.03         8.02        29.95        26.01        25.02 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 TCGA-44-3919 TCGA-44-5643 TCGA-50-5049 
       44.61        19.10        13.15         6.21         3.48        48.82 
TCGA-50-6594 TCGA-55-1592 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 
       12.16        23.05         1.97        23.38        15.35         0.46 
TCGA-91-6828 TCGA-91-6836 
        1.22         0.36 

$`ADAMTS16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       11.64         5.19        18.87        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
        3.88        25.51        11.05         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       52.57        29.95        20.28         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
              0.36               0.07 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             48.82              85.32 
  ADAMTS16 MUTATED ADAMTS16 WILD-TYPE 
             14.25              13.87 
[1] "0.4 - 48.8 (14.2)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED"   "ADAMTS16 MUTATED" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
  "ADAMTS16 MUTATED" "ADAMTS16 WILD-TYPE" "ADAMTS16 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS16 WILD-TYPE"   "ADAMTS16 MUTATED" 
[1] "hr=" "1.4"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      9   13
  ADAMTS16 WILD-TYPE   84   66
        clus
vv       ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  FEMALE                9                 84
  MALE                 13                 66
D81V4, continuous
D81V5, multiclass
D81V6, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  T1                3                 38
  T2               16                 92
  T3                2                 12
  T4                1                  7
D81V7, multiclass
       clus
vv      ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  N0                  11                 84
  N1                   6                 31
  N2+N3                3                 32
D81V8, multiclass
    clus
vv   ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  M0               17                120
  M1                3                  6
  MX                2                 20
D81V9, multiclass
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  I                 11                 77
  II                 4                 29
  III                4                 35
  IV                 3                  6
D81V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      2   20
  ADAMTS16 WILD-TYPE   14  136
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  NO                 2                 14
  YES               20                136
D81V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS16 MUTATED      3   19
  ADAMTS16 WILD-TYPE   25  125
     clus
vv    ADAMTS16 MUTATED ADAMTS16 WILD-TYPE
  NO                 3                 25
  YES               19                125

Clustering(82) Variable = PJA1 MUTATION ANALYSIS
D82V1, survival
                sevent
clus2             0  1
  PJA1 MUTATED    5  1
  PJA1 WILD-TYPE 94 49
  PJA1 MUTATED PJA1 WILD-TYPE 
             6            143 
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             49 
$`PJA1 MUTATED`
TCGA-05-4390 TCGA-44-3398 TCGA-49-4514 TCGA-50-6592 TCGA-64-1676 TCGA-73-4668 
       37.02         8.32        43.20        25.51        56.81        15.35 

$`PJA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  PJA1 MUTATED PJA1 WILD-TYPE 
          8.32           0.07 
  PJA1 MUTATED PJA1 WILD-TYPE 
         56.81          85.32 
  PJA1 MUTATED PJA1 WILD-TYPE 
        31.265         13.150 
[1] "8.3 - 56.8 (31.3)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6836 
"PJA1 WILD-TYPE" 
[1] "hr=" "3.6"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      5    3
  PJA1 WILD-TYPE   88   76
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D82V4, continuous
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4676     TCGA-75-5122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D82V5, multiclass
D82V6, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            0             14
  T4            0              8
D82V7, multiclass
       clus
vv      PJA1 MUTATED PJA1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
D82V8, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
D82V9, multiclass
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  I              6             82
  II             1             32
  III            1             38
  IV             0              9
D82V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      0    8
  PJA1 WILD-TYPE   16  148
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             0             16
  YES            8            148
D82V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      1    7
  PJA1 WILD-TYPE   27  137
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             1             27
  YES            7            137

Clustering(83) Variable = RPL10L MUTATION ANALYSIS
D83V1, survival
                  sevent
clus2               0  1
  RPL10L MUTATED    3  2
  RPL10L WILD-TYPE 96 48
  RPL10L MUTATED RPL10L WILD-TYPE 
               5              144 
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               48 
$`RPL10L MUTATED`
TCGA-05-4427 TCGA-38-4631 TCGA-50-5045 TCGA-64-5778 TCGA-73-4668 
       26.01        11.64        71.47        30.44        15.35 

$`RPL10L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  RPL10L MUTATED RPL10L WILD-TYPE 
           11.64             0.07 
  RPL10L MUTATED RPL10L WILD-TYPE 
           71.47            85.32 
  RPL10L MUTATED RPL10L WILD-TYPE 
           26.01            13.15 
[1] "11.6 - 71.5 (26.0)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-91-6836 
"RPL10L WILD-TYPE" 
[1] "hr=" "1.4"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      4    2
  RPL10L WILD-TYPE   89   77
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D83V4, continuous
[1] "Remove cluster labels:" "RPL10L MUTATED"        
clus
  RPL10L MUTATED RPL10L WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
D83V5, multiclass
D83V6, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  T1              0               41
  T2              6              102
  T3              0               14
  T4              0                8
D83V7, multiclass
       clus
vv      RPL10L MUTATED RPL10L WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
D83V8, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  M0              5              132
  M1              1                8
  MX              0               22
D83V9, multiclass
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  I                3               85
  II               2               31
  III              0               39
  IV               1                8
D83V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      1    5
  RPL10L WILD-TYPE   15  151
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  NO               1               15
  YES              5              151
D83V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      1    5
  RPL10L WILD-TYPE   27  139
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  NO               1               27
  YES              5              139

Clustering(84) Variable = OR2T27 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  OR2T27 MUTATED    5  2
  OR2T27 WILD-TYPE 94 48
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               7              142 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               48 
$`OR2T27 MUTATED`
TCGA-35-5375 TCGA-44-2659 TCGA-44-6778 TCGA-50-6590 TCGA-64-5781 TCGA-67-3771 
        8.68        17.39        36.49        42.31        39.52         1.97 
TCGA-73-4658 
       52.57 

$`OR2T27 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2T27 MUTATED OR2T27 WILD-TYPE 
            1.97             0.07 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           52.57            85.32 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           36.49            13.15 
[1] "2.0 - 52.6 (36.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6836 
"OR2T27 WILD-TYPE" 
[1] "hr=" "1.9"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      5    3
  OR2T27 WILD-TYPE   88   76
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D84V4, continuous
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D84V5, multiclass
D84V6, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  T1              3               38
  T2              5              103
  T3              0               14
  T4              0                8
D84V7, multiclass
       clus
vv      OR2T27 MUTATED OR2T27 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D84V8, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              1               21
D84V9, multiclass
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  I                6               82
  II               1               32
  III              1               38
  IV               0                9
D84V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      0    8
  OR2T27 WILD-TYPE   16  148
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               0               16
  YES              8              148
D84V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      1    7
  OR2T27 WILD-TYPE   27  137
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               1               27
  YES              7              137

Clustering(85) Variable = SETD2 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  SETD2 MUTATED    7  6
  SETD2 WILD-TYPE 92 44
  SETD2 MUTATED SETD2 WILD-TYPE 
             13             136 
  SETD2 MUTATED SETD2 WILD-TYPE 
              6              44 
$`SETD2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-44-2666 TCGA-49-4487 TCGA-49-6744 
        9.96        26.01        11.64         3.19        28.11        12.99 
TCGA-50-5941 TCGA-50-5942 TCGA-64-5775 TCGA-67-6216 TCGA-73-4658 TCGA-73-4666 
        9.37         4.44         0.10         0.69        52.57        20.28 
TCGA-73-4676 
        4.01 

$`SETD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       15.12        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
        2.04         0.59         0.89        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 
       29.95        15.35         0.46         1.32         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SETD2 MUTATED SETD2 WILD-TYPE 
           0.10            0.07 
  SETD2 MUTATED SETD2 WILD-TYPE 
          52.57           85.32 
  SETD2 MUTATED SETD2 WILD-TYPE 
           9.96           14.50 
[1] "0.1 - 52.6 (10.0)" "0.1 - 85.3 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6836 
"SETD2 WILD-TYPE" 
[1] "hr=" "2.2"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED     11    4
  SETD2 WILD-TYPE   82   75
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  FEMALE            11              82
  MALE               4              75
D85V4, continuous
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4668      TCGA-75-5122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
D85V5, multiclass
D85V6, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  T1             4              37
  T2             8             100
  T3             1              13
  T4             2               6
D85V7, multiclass
       clus
vv      SETD2 MUTATED SETD2 WILD-TYPE
  N0                9              86
  N1                4              33
  N2+N3             2              33
D85V8, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  M0            12             125
  M1             2               7
  MX             1              21
D85V9, multiclass
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  I               5              83
  II              3              30
  III             4              35
  IV              2               7
D85V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   12
  SETD2 WILD-TYPE   13  144
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  NO              3              13
  YES            12             144
D85V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   12
  SETD2 WILD-TYPE   25  132
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  NO              3              25
  YES            12             132

Clustering(86) Variable = OR4S2 MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  OR4S2 MUTATED    4  1
  OR4S2 WILD-TYPE 95 49
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              5             144 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              1              49 
$`OR4S2 MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-49-4514 TCGA-64-5781 TCGA-67-3771 
        4.96        28.37        43.20        39.52         1.97 

$`OR4S2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       16.67         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR4S2 MUTATED OR4S2 WILD-TYPE 
           1.97            0.07 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          43.20           85.32 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          28.37           13.51 
[1] "2.0 - 43.2 (28.4)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-91-6836 
"OR4S2 WILD-TYPE" 
[1] "hr=" "2"  
D86V2, continuous
D86V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      3    3
  OR4S2 WILD-TYPE   90   76
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D86V4, continuous
D86V5, multiclass
D86V6, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
D86V7, multiclass
       clus
vv      OR4S2 MUTATED OR4S2 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D86V8, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  M0             5             132
  M1             1               8
  MX             0              22
D86V9, multiclass
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  I               3              85
  II              2              31
  III             0              39
  IV              1               8
D86V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      0    6
  OR4S2 WILD-TYPE   16  150
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  NO              0              16
  YES             6             150
D86V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      0    6
  OR4S2 WILD-TYPE   28  138
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  NO              0              28
  YES             6             138

Clustering(87) Variable = RBM10 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2              0  1
  RBM10 MUTATED    7  3
  RBM10 WILD-TYPE 92 47
  RBM10 MUTATED RBM10 WILD-TYPE 
             10             139 
  RBM10 MUTATED RBM10 WILD-TYPE 
              3              47 
$`RBM10 MUTATED`
TCGA-05-4418 TCGA-05-4424 TCGA-35-3615 TCGA-44-2655 TCGA-44-4112 TCGA-49-4494 
        8.98        30.02         0.46        18.87         4.60        35.54 
TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 TCGA-91-6828 
       56.81         0.10         0.99         1.22 

$`RBM10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  RBM10 MUTATED RBM10 WILD-TYPE 
           0.10            0.07 
  RBM10 MUTATED RBM10 WILD-TYPE 
          56.81           85.32 
  RBM10 MUTATED RBM10 WILD-TYPE 
           6.79           14.01 
[1] "0.1 - 56.8 (6.8)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "RBM10 MUTATED" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-91-6836 
"RBM10 WILD-TYPE" 
[1] "hr=" "1.1"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      3    9
  RBM10 WILD-TYPE   90   70
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  FEMALE             3              90
  MALE               9              70
D87V4, continuous
D87V5, multiclass
D87V6, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             3              11
  T4             2               6
D87V7, multiclass
       clus
vv      RBM10 MUTATED RBM10 WILD-TYPE
  N0                9              86
  N1                0              37
  N2+N3             3              32
D87V8, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             1              21
D87V9, multiclass
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  I               7              81
  II              1              32
  III             4              35
  IV              0               9
D87V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      0   12
  RBM10 WILD-TYPE   16  144
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              0              16
  YES            12             144
D87V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      1   11
  RBM10 WILD-TYPE   27  133
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              1              27
  YES            11             133

Clustering(88) Variable = PRR21 MUTATION ANALYSIS
D88V1, survival
                 sevent
clus2              0  1
  PRR21 MUTATED    3  2
  PRR21 WILD-TYPE 96 48
  PRR21 MUTATED PRR21 WILD-TYPE 
              5             144 
  PRR21 MUTATED PRR21 WILD-TYPE 
              2              48 
$`PRR21 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-64-1677 TCGA-64-5781 TCGA-67-3770 
        3.98        37.02        20.65        39.52         0.99 

$`PRR21 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       16.67         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  PRR21 MUTATED PRR21 WILD-TYPE 
           0.99            0.07 
  PRR21 MUTATED PRR21 WILD-TYPE 
          39.52           85.32 
  PRR21 MUTATED PRR21 WILD-TYPE 
          20.65           13.51 
[1] "1.0 - 39.5 (20.6)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "PRR21 MUTATED" "PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6836 
"PRR21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "PRR21 MUTATED" "PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6836 
"PRR21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "PRR21 MUTATED" "PRR21 WILD-TYPE"   "PRR21 MUTATED" "PRR21 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-91-6836 
"PRR21 WILD-TYPE" 
[1] "hr=" "1.2"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      5    0
  PRR21 WILD-TYPE   88   79
        clus
vv       PRR21 MUTATED PRR21 WILD-TYPE
  FEMALE             5              88
  MALE               0              79
D88V4, continuous
[1] "Remove cluster labels:" "PRR21 MUTATED"         
clus
  PRR21 MUTATED PRR21 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"PRR21 WILD-TYPE" "PRR21 WILD-TYPE" "PRR21 WILD-TYPE" 
D88V5, multiclass
D88V6, multiclass
    clus
vv   PRR21 MUTATED PRR21 WILD-TYPE
  T1             1              40
  T2             3             105
  T3             1              13
  T4             0               8
D88V7, multiclass
       clus
vv      PRR21 MUTATED PRR21 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             1              34
D88V8, multiclass
    clus
vv   PRR21 MUTATED PRR21 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D88V9, multiclass
     clus
vv    PRR21 MUTATED PRR21 WILD-TYPE
  I               3              85
  II              0              33
  III             2              37
  IV              0               9
D88V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      0    5
  PRR21 WILD-TYPE   16  151
     clus
vv    PRR21 MUTATED PRR21 WILD-TYPE
  NO              0              16
  YES             5             151
D88V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRR21 MUTATED      0    5
  PRR21 WILD-TYPE   28  139
     clus
vv    PRR21 MUTATED PRR21 WILD-TYPE
  NO              0              28
  YES             5             139

Clustering(89) Variable = PTH MUTATION ANALYSIS
D89V1, survival
               sevent
clus2            0  1
  PTH MUTATED    1  2
  PTH WILD-TYPE 98 48
  PTH MUTATED PTH WILD-TYPE 
            3           146 
  PTH MUTATED PTH WILD-TYPE 
            2            48 
$`PTH MUTATED`
TCGA-05-4415 TCGA-44-2657 TCGA-49-4505 
        2.96        13.15        14.07 

$`PTH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        19.10        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PTH MUTATED PTH WILD-TYPE 
         2.96          0.07 
  PTH MUTATED PTH WILD-TYPE 
        14.07         85.32 
  PTH MUTATED PTH WILD-TYPE 
        13.15         13.94 
[1] "3.0 - 14.1 (13.2)" "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
[1] "hr=" "5.5"
D89V2, continuous
D89V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      2    1
  PTH WILD-TYPE   91   78
        clus
vv       PTH MUTATED PTH WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D89V4, continuous
D89V5, multiclass
D89V6, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  T1           0            41
  T2           2           106
  T3           0            14
  T4           1             7
D89V7, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           165 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4403    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1592    TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-1676    TCGA-64-1677 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3770    TCGA-67-3771 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3772    TCGA-67-3773    TCGA-67-3774    TCGA-67-4679    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6207    TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D89V8, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  M0           3           134
  M1           0             9
  MX           0            22
D89V9, multiclass
     clus
vv    PTH MUTATED PTH WILD-TYPE
  I             1            87
  II            1            32
  III           1            38
  IV            0             9
D89V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   16  153
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            16
  YES           3           153
D89V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   28  141
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            28
  YES           3           141

Clustering(90) Variable = NRXN1 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED   16  7
  NRXN1 WILD-TYPE 83 43
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             23             126 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              7              43 
$`NRXN1 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 
       38.07        19.92         9.96        47.05        29.95        25.02 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-49-4488 
       11.64        44.61        17.39         8.09         6.44        28.57 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-6590 TCGA-55-5899 TCGA-64-5774 
       43.20        15.02        12.13        42.31         2.86        83.84 
TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4668 TCGA-91-6829 
       39.52         1.97        23.38        15.35        41.33 

$`NRXN1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
        3.98        14.01        37.02        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
        2.96        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 
       14.07        32.84         8.81        29.46        29.75        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           1.97            0.07 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          83.84           85.32 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          23.38           12.46 
[1] "2.0 - 83.8 (23.4)" "0.1 - 85.3 (12.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NRXN1 MUTATED"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED"   "NRXN1 MUTATED"   "NRXN1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-91-6836 
"NRXN1 WILD-TYPE" 
[1] "hr=" "1.7"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     11   14
  NRXN1 WILD-TYPE   82   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE            11              82
  MALE              14              65
D90V4, continuous
D90V5, multiclass
D90V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             7              34
  T2            16              92
  T3             0              14
  T4             2               6
D90V7, multiclass
       clus
vv      NRXN1 MUTATED NRXN1 WILD-TYPE
  N0               15              80
  N1                7              30
  N2+N3             3              32
D90V8, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  M0            20             117
  M1             1               8
  MX             4              18
D90V9, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I              16              72
  II              4              29
  III             4              35
  IV              1               8
D90V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      0   25
  NRXN1 WILD-TYPE   16  131
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  NO              0              16
  YES            25             131
D90V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      4   21
  NRXN1 WILD-TYPE   24  123
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  NO              4              24
  YES            21             123

Clustering(91) Variable = C1ORF49 MUTATION ANALYSIS
D91V1, survival
                   sevent
clus2                0  1
  C1ORF49 MUTATED    5  1
  C1ORF49 WILD-TYPE 94 49
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               143 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                49 
$`C1ORF49 MUTATED`
TCGA-05-4424 TCGA-35-5375 TCGA-55-6712 TCGA-64-1677 TCGA-64-5778 TCGA-91-6836 
       30.02         8.68         0.79        20.65        30.44         0.36 

$`C1ORF49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22        41.33         1.28         1.15 

  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
             0.36              0.07 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            30.44             85.32 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
           14.665            13.870 
[1] "0.4 - 30.4 (14.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6836 
  "C1ORF49 MUTATED" 
[1] "hr=" "1.4"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      2    4
  C1ORF49 WILD-TYPE   91   75
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  FEMALE               2                91
  MALE                 4                75
D91V4, continuous
D91V5, multiclass
D91V6, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  T1               0                41
  T2               5               103
  T3               1                13
  T4               0                 8
D91V7, multiclass
       clus
vv      C1ORF49 MUTATED C1ORF49 WILD-TYPE
  N0                  3                92
  N1                  1                36
  N2+N3               2                33
D91V8, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               2                20
D91V9, multiclass
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D91V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   16  150
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                16
  YES               6               150
D91V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   28  138
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                28
  YES               6               138

Clustering(92) Variable = OR14I1 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  OR14I1 MUTATED    5  1
  OR14I1 WILD-TYPE 94 49
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               6              143 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               49 
$`OR14I1 MUTATED`
TCGA-05-4382 TCGA-44-6778 TCGA-55-1595 TCGA-64-1676 TCGA-67-3770 TCGA-73-4659 
       19.92        36.49        48.62        56.81         0.99        23.38 

$`OR14I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        0.89         0.69        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR14I1 MUTATED OR14I1 WILD-TYPE 
            0.99             0.07 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
           56.81            85.32 
  OR14I1 MUTATED OR14I1 WILD-TYPE 
          29.935           13.150 
[1] "1.0 - 56.8 (29.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE"   "OR14I1 MUTATED" "OR14I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
  "OR14I1 MUTATED" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-91-6836 
"OR14I1 WILD-TYPE" 
[1] "hr=" "3.6"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      2    4
  OR14I1 WILD-TYPE   91   75
        clus
vv       OR14I1 MUTATED OR14I1 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D92V4, continuous
[1] "Remove cluster labels:" "OR14I1 MUTATED"        
clus
  OR14I1 MUTATED OR14I1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" "OR14I1 WILD-TYPE" 
D92V5, multiclass
D92V6, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  T1              4               37
  T2              2              106
  T3              0               14
  T4              0                8
D92V7, multiclass
       clus
vv      OR14I1 MUTATED OR14I1 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D92V8, multiclass
    clus
vv   OR14I1 MUTATED OR14I1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D92V9, multiclass
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D92V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      0    6
  OR14I1 WILD-TYPE   16  150
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  NO               0               16
  YES              6              150
D92V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR14I1 MUTATED      0    6
  OR14I1 WILD-TYPE   28  138
     clus
vv    OR14I1 MUTATED OR14I1 WILD-TYPE
  NO               0               28
  YES              6              138

Clustering(93) Variable = AKR1B10 MUTATION ANALYSIS
D93V1, survival
                   sevent
clus2                0  1
  AKR1B10 MUTATED    1  2
  AKR1B10 WILD-TYPE 98 48
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                3               146 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                48 
$`AKR1B10 MUTATED`
TCGA-44-6777 TCGA-49-6743 TCGA-91-6829 
       32.45        12.13        41.33 

$`AKR1B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            12.13              0.07 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            41.33             85.32 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            32.45             13.51 
[1] "12.1 - 41.3 (32.5)" "0.1 - 85.3 (13.5)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-91-6836 
"AKR1B10 WILD-TYPE" 
[1] "hr=" "1.4"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      2    2
  AKR1B10 WILD-TYPE   91   77
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  FEMALE               2                91
  MALE                 2                77
D93V4, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
D93V5, multiclass
D93V6, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               0                 8
D93V7, multiclass
       clus
vv      AKR1B10 MUTATED AKR1B10 WILD-TYPE
  N0                  2                93
  N1                  0                37
  N2+N3               1                34
D93V8, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  M0               1               136
  M1               0                 9
  MX               3                19
D93V9, multiclass
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  I                 3                85
  II                0                33
  III               1                38
  IV                0                 9
D93V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      1    3
  AKR1B10 WILD-TYPE   15  153
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  NO                1                15
  YES               3               153
D93V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      1    3
  AKR1B10 WILD-TYPE   27  141
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  NO                1                27
  YES               3               141

Clustering(94) Variable = FLI1 MUTATION ANALYSIS
D94V1, survival
                sevent
clus2             0  1
  FLI1 MUTATED    5  1
  FLI1 WILD-TYPE 94 49
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            143 
  FLI1 MUTATED FLI1 WILD-TYPE 
             1             49 
$`FLI1 MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-44-2661 TCGA-44-3398 TCGA-44-3918 TCGA-50-5045 
       29.95        30.02         3.39         8.32         6.44        71.47 

$`FLI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 
        5.19        18.87        19.10        13.15        17.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 
       13.15         3.19         8.09        10.22         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FLI1 MUTATED FLI1 WILD-TYPE 
          3.39           0.07 
  FLI1 MUTATED FLI1 WILD-TYPE 
         71.47          85.32 
  FLI1 MUTATED FLI1 WILD-TYPE 
        19.135         13.870 
[1] "3.4 - 71.5 (19.1)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" "FLI1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6836 
"FLI1 WILD-TYPE" 
[1] "hr=" "2.7"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      4    2
  FLI1 WILD-TYPE   89   77
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D94V4, continuous
D94V5, multiclass
D94V6, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  T1            3             38
  T2            2            106
  T3            1             13
  T4            0              8
D94V7, multiclass
       clus
vv      FLI1 MUTATED FLI1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
D94V8, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
D94V9, multiclass
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  I              5             83
  II             1             32
  III            0             39
  IV             0              9
D94V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      1    5
  FLI1 WILD-TYPE   15  151
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             1             15
  YES            5            151
D94V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      0    6
  FLI1 WILD-TYPE   28  138
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             0             28
  YES            6            138

Clustering(95) Variable = GPR174 MUTATION ANALYSIS
D95V1, survival
                  sevent
clus2               0  1
  GPR174 MUTATED    4  2
  GPR174 WILD-TYPE 95 48
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              143 
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               48 
$`GPR174 MUTATED`
TCGA-05-4405 TCGA-38-4626 TCGA-49-6743 TCGA-50-5931 TCGA-50-6597 TCGA-91-6829 
       20.05        85.32        12.13         8.78        33.37        41.33 

$`GPR174 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  GPR174 MUTATED GPR174 WILD-TYPE 
            8.78             0.07 
  GPR174 MUTATED GPR174 WILD-TYPE 
           85.32            83.84 
  GPR174 MUTATED GPR174 WILD-TYPE 
           26.71            13.15 
[1] "8.8 - 85.3 (26.7)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR174 WILD-TYPE"   "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-91-6836 
"GPR174 WILD-TYPE" 
[1] "hr=" "2"  
D95V2, continuous
D95V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      5    1
  GPR174 WILD-TYPE   88   78
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D95V4, continuous
D95V5, multiclass
D95V6, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              0               14
  T4              0                8
D95V7, multiclass
       clus
vv      GPR174 MUTATED GPR174 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D95V8, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              2               20
D95V9, multiclass
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  I                4               84
  II               1               32
  III              1               38
  IV               0                9
D95V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      0    6
  GPR174 WILD-TYPE   16  150
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               0               16
  YES              6              150
D95V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      1    5
  GPR174 WILD-TYPE   27  139
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               1               27
  YES              5              139

Clustering(96) Variable = KRTAP19-6 MUTATION ANALYSIS
D96V1, survival
                     sevent
clus2                  0  1
  KRTAP19-6 MUTATED    3  0
  KRTAP19-6 WILD-TYPE 96 50
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  3                 146 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  0                  50 
$`KRTAP19-6 MUTATED`
TCGA-44-2659 TCGA-64-1676 TCGA-64-5778 
       17.39        56.81        30.44 

$`KRTAP19-6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              17.39                0.07 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              56.81               85.32 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              30.44               13.15 
[1] "17.4 - 56.8 (30.4)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
  "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      1    3
  KRTAP19-6 WILD-TYPE   92   76
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  FEMALE                 1                  92
  MALE                   3                  76
D96V4, continuous
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  1                  11 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1677          TCGA-71-6725          TCGA-73-4659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D96V5, multiclass
D96V6, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 0                  14
  T4                 0                   8
D96V7, multiclass
       clus
vv      KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  N0                    3                  92
  N1                    1                  36
  N2+N3                 0                  35
D96V8, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 0                  22
D96V9, multiclass
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 0                  39
  IV                  0                   9
D96V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      0    4
  KRTAP19-6 WILD-TYPE   16  152
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  NO                  0                  16
  YES                 4                 152
D96V11, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      1    3
  KRTAP19-6 WILD-TYPE   27  141
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  NO                  1                  27
  YES                 3                 141

Clustering(97) Variable = PDZRN3 MUTATION ANALYSIS
D97V1, survival
                  sevent
clus2               0  1
  PDZRN3 MUTATED    7  1
  PDZRN3 WILD-TYPE 92 49
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
               8              141 
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
               1               49 
$`PDZRN3 MUTATED`
TCGA-05-4405 TCGA-35-4123 TCGA-44-2656 TCGA-44-3918 TCGA-44-4112 TCGA-50-5941 
       20.05         5.95        19.10         6.44         4.60         9.37 
TCGA-64-5775 TCGA-64-5778 
        0.10        30.44 

$`PDZRN3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
            0.10             0.07 
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
           30.44            85.32 
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
           7.905           14.010 
[1] "0.1 - 30.4 (7.9)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN3 WILD-TYPE"   "PDZRN3 MUTATED"   "PDZRN3 MUTATED" "PDZRN3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN3 WILD-TYPE" 
[1] "hr=" "1.3"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN3 MUTATED      5    5
  PDZRN3 WILD-TYPE   88   74
        clus
vv       PDZRN3 MUTATED PDZRN3 WILD-TYPE
  FEMALE              5               88
  MALE                5               74
D97V4, continuous
[1] "Remove cluster labels:" "PDZRN3 MUTATED"        
clus
  PDZRN3 MUTATED PDZRN3 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-71-6725 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"PDZRN3 WILD-TYPE" "PDZRN3 WILD-TYPE" 
D97V5, multiclass
D97V6, multiclass
    clus
vv   PDZRN3 MUTATED PDZRN3 WILD-TYPE
  T1              2               39
  T2              6              102
  T3              1               13
  T4              1                7
D97V7, multiclass
       clus
vv      PDZRN3 MUTATED PDZRN3 WILD-TYPE
  N0                 8               87
  N1                 0               37
  N2+N3              2               33
D97V8, multiclass
    clus
vv   PDZRN3 MUTATED PDZRN3 WILD-TYPE
  M0             10              127
  M1              0                9
  MX              0               22
D97V9, multiclass
     clus
vv    PDZRN3 MUTATED PDZRN3 WILD-TYPE
  I                7               81
  II               0               33
  III              3               36
  IV               0                9
D97V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN3 MUTATED      0   10
  PDZRN3 WILD-TYPE   16  146
     clus
vv    PDZRN3 MUTATED PDZRN3 WILD-TYPE
  NO               0               16
  YES             10              146
D97V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN3 MUTATED      1    9
  PDZRN3 WILD-TYPE   27  135
     clus
vv    PDZRN3 MUTATED PDZRN3 WILD-TYPE
  NO               1               27
  YES              9              135

Clustering(98) Variable = SYT4 MUTATION ANALYSIS
D98V1, survival
                sevent
clus2             0  1
  SYT4 MUTATED    5  3
  SYT4 WILD-TYPE 94 47
  SYT4 MUTATED SYT4 WILD-TYPE 
             8            141 
  SYT4 MUTATED SYT4 WILD-TYPE 
             3             47 
$`SYT4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-6774 TCGA-50-5931 TCGA-50-6590 TCGA-73-4666 
       19.92         9.96         5.42         8.78        42.31        20.28 
TCGA-73-4668 TCGA-73-4675 
       15.35         1.32 

$`SYT4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       29.95         0.46         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SYT4 MUTATED SYT4 WILD-TYPE 
          1.32           0.07 
  SYT4 MUTATED SYT4 WILD-TYPE 
         42.31          85.32 
  SYT4 MUTATED SYT4 WILD-TYPE 
        12.655         13.870 
[1] "1.3 - 42.3 (12.7)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE"   "SYT4 MUTATED"   "SYT4 MUTATED" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SYT4 WILD-TYPE"   "SYT4 MUTATED" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" "SYT4 WILD-TYPE" 
    TCGA-91-6836 
"SYT4 WILD-TYPE" 
[1] "hr=" "1.8"
D98V2, continuous
D98V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      6    5
  SYT4 WILD-TYPE   87   74
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  FEMALE            6             87
  MALE              5             74
D98V4, continuous
D98V5, multiclass
D98V6, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  T1            2             39
  T2            6            102
  T3            2             12
  T4            1              7
D98V7, multiclass
       clus
vv      SYT4 MUTATED SYT4 WILD-TYPE
  N0               6             89
  N1               3             34
  N2+N3            2             33
D98V8, multiclass
    clus
vv   SYT4 MUTATED SYT4 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
D98V9, multiclass
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  I              5             83
  II             1             32
  III            4             35
  IV             1              8
D98V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      1   10
  SYT4 WILD-TYPE   15  146
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  NO             1             15
  YES           10            146
D98V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SYT4 MUTATED      2    9
  SYT4 WILD-TYPE   26  135
     clus
vv    SYT4 MUTATED SYT4 WILD-TYPE
  NO             2             26
  YES            9            135

Clustering(99) Variable = ZSWIM2 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  ZSWIM2 MUTATED    7  5
  ZSWIM2 WILD-TYPE 92 45
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
              12              137 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
               5               45 
$`ZSWIM2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-38-4626 TCGA-44-3918 TCGA-44-6145 
       19.92         9.96        26.01        85.32         6.44         3.35 
TCGA-44-6777 TCGA-49-4501 TCGA-49-4514 TCGA-50-5049 TCGA-50-5933 TCGA-73-4658 
       32.45        46.72        43.20        48.82        77.88        52.57 

$`ZSWIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         0.30         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
            3.35             0.07 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
           85.32            83.84 
  ZSWIM2 MUTATED ZSWIM2 WILD-TYPE 
          37.825           12.990 
[1] "3.4 - 85.3 (37.8)" "0.1 - 83.8 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE"   "ZSWIM2 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" "ZSWIM2 WILD-TYPE" 
      TCGA-91-6836 
"ZSWIM2 WILD-TYPE" 
[1] "hr=" "2.2"
D99V2, continuous
D99V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      9    4
  ZSWIM2 WILD-TYPE   84   75
        clus
vv       ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  FEMALE              9               84
  MALE                4               75
D99V4, continuous
D99V5, multiclass
D99V6, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  T1              3               38
  T2              7              101
  T3              1               13
  T4              2                6
D99V7, multiclass
       clus
vv      ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  N0                 9               86
  N1                 2               35
  N2+N3              1               34
D99V8, multiclass
    clus
vv   ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  M0             11              126
  M1              0                9
  MX              2               20
D99V9, multiclass
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  I                8               80
  II               3               30
  III              2               37
  IV               0                9
D99V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      3   10
  ZSWIM2 WILD-TYPE   13  146
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  NO               3               13
  YES             10              146
D99V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSWIM2 MUTATED      0   13
  ZSWIM2 WILD-TYPE   28  131
     clus
vv    ZSWIM2 MUTATED ZSWIM2 WILD-TYPE
  NO               0               28
  YES             13              131

Clustering(100) Variable = MAGEB18 MUTATION ANALYSIS
D100V1, survival
                   sevent
clus2                0  1
  MAGEB18 MUTATED    3  2
  MAGEB18 WILD-TYPE 96 48
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                5               144 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
                2                48 
$`MAGEB18 MUTATED`
TCGA-44-2657 TCGA-44-3396 TCGA-44-6774 TCGA-44-6777 TCGA-50-6592 
       13.15        10.22         5.42        32.45        25.51 

$`MAGEB18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
             5.42              0.07 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            32.45             85.32 
  MAGEB18 MUTATED MAGEB18 WILD-TYPE 
            13.15             13.94 
[1] "5.4 - 32.5 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "MAGEB18 MUTATED" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE"   "MAGEB18 MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" "MAGEB18 WILD-TYPE" 
       TCGA-91-6836 
"MAGEB18 WILD-TYPE" 
[1] "hr=" "1.6"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      5    0
  MAGEB18 WILD-TYPE   88   79
        clus
vv       MAGEB18 MUTATED MAGEB18 WILD-TYPE
  FEMALE               5                88
  MALE                 0                79
D100V4, continuous
D100V5, multiclass
D100V6, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  T1               1                40
  T2               4               104
  T3               0                14
  T4               0                 8
D100V7, multiclass
       clus
vv      MAGEB18 MUTATED MAGEB18 WILD-TYPE
  N0                  1                94
  N1                  0                37
  N2+N3               2                33
D100V8, multiclass
    clus
vv   MAGEB18 MUTATED MAGEB18 WILD-TYPE
  M0               4               133
  M1               0                 9
  MX               1                21
D100V9, multiclass
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  I                 3                85
  II                0                33
  III               2                37
  IV                0                 9
D100V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      1    4
  MAGEB18 WILD-TYPE   15  152
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  NO                1                15
  YES               4               152
D100V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MAGEB18 MUTATED      1    4
  MAGEB18 WILD-TYPE   27  140
     clus
vv    MAGEB18 MUTATED MAGEB18 WILD-TYPE
  NO                1                27
  YES               4               140

Clustering(101) Variable = NTNG1 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  NTNG1 MUTATED    6  4
  NTNG1 WILD-TYPE 93 46
  NTNG1 MUTATED NTNG1 WILD-TYPE 
             10             139 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              4              46 
$`NTNG1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
        9.96        26.01        11.64         8.09         8.32         6.44 
TCGA-49-4488 TCGA-50-6590 TCGA-55-5899 TCGA-73-4668 
       28.57        42.31         2.86        15.35 

$`NTNG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       13.15         3.19        10.22         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  NTNG1 MUTATED NTNG1 WILD-TYPE 
           2.86            0.07 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          42.31           85.32 
  NTNG1 MUTATED NTNG1 WILD-TYPE 
          10.80           14.01 
[1] "2.9 - 42.3 (10.8)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTNG1 WILD-TYPE"   "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "NTNG1 MUTATED" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE"   "NTNG1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-91-6836 
"NTNG1 WILD-TYPE" 
[1] "hr=" "1.8"
D101V2, continuous
D101V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      7    4
  NTNG1 WILD-TYPE   86   75
        clus
vv       NTNG1 MUTATED NTNG1 WILD-TYPE
  FEMALE             7              86
  MALE               4              75
D101V4, continuous
[1] "Remove cluster labels:" "NTNG1 MUTATED"         
clus
  NTNG1 MUTATED NTNG1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" "NTNG1 WILD-TYPE" 
D101V5, multiclass
D101V6, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  T1             4              37
  T2             6             102
  T3             0              14
  T4             1               7
D101V7, multiclass
       clus
vv      NTNG1 MUTATED NTNG1 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
D101V8, multiclass
    clus
vv   NTNG1 MUTATED NTNG1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D101V9, multiclass
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  I               8              80
  II              2              31
  III             1              38
  IV              0               9
D101V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      0   11
  NTNG1 WILD-TYPE   16  145
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  NO              0              16
  YES            11             145
D101V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTNG1 MUTATED      1   10
  NTNG1 WILD-TYPE   27  134
     clus
vv    NTNG1 MUTATED NTNG1 WILD-TYPE
  NO              1              27
  YES            10             134

Clustering(102) Variable = C7 MUTATION ANALYSIS
D102V1, survival
              sevent
clus2           0  1
  C7 MUTATED    6  6
  C7 WILD-TYPE 93 44
  C7 MUTATED C7 WILD-TYPE 
          12          137 
  C7 MUTATED C7 WILD-TYPE 
           6           44 
$`C7 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 
       19.92         9.96        24.03        11.64        44.61        19.10 
TCGA-44-3398 TCGA-44-6144 TCGA-49-4510 TCGA-50-6592 TCGA-55-6642 TCGA-91-6831 
        8.32         0.30        29.46        25.51        32.61         1.28 

$`C7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       49.02        28.37        35.28         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.15         0.36 

  C7 MUTATED C7 WILD-TYPE 
        0.30         0.07 
  C7 MUTATED C7 WILD-TYPE 
       44.61        85.32 
  C7 MUTATED C7 WILD-TYPE 
       19.51        13.15 
[1] "0.3 - 44.6 (19.5)" "0.1 - 85.3 (13.2)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
"C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"C7 WILD-TYPE"   "C7 MUTATED"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
  "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE"   "C7 MUTATED" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"C7 WILD-TYPE"   "C7 MUTATED" "C7 WILD-TYPE" "C7 WILD-TYPE" 
[1] "hr=" "1.9"
D102V2, continuous
D102V3, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      4   10
  C7 WILD-TYPE   89   69
        clus
vv       C7 MUTATED C7 WILD-TYPE
  FEMALE          4           89
  MALE           10           69
D102V4, continuous
[1] "Remove cluster labels:" "C7 MUTATED"            
clus
  C7 MUTATED C7 WILD-TYPE 
           1           11 
  TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-64-1677   TCGA-64-5778 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-71-6725   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" "C7 WILD-TYPE" 
  TCGA-73-4676 
"C7 WILD-TYPE" 
D102V5, multiclass
D102V6, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  T1          2           39
  T2         10           98
  T3          0           14
  T4          2            6
D102V7, multiclass
       clus
vv      C7 MUTATED C7 WILD-TYPE
  N0             9           86
  N1             4           33
  N2+N3          1           34
D102V8, multiclass
    clus
vv   C7 MUTATED C7 WILD-TYPE
  M0         11          126
  M1          1            8
  MX          2           20
D102V9, multiclass
     clus
vv    C7 MUTATED C7 WILD-TYPE
  I            9           79
  II           2           31
  III          2           37
  IV           1            8
D102V10, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      0   14
  C7 WILD-TYPE   16  142
     clus
vv    C7 MUTATED C7 WILD-TYPE
  NO           0           16
  YES         14          142
D102V11, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  C7 MUTATED      0   14
  C7 WILD-TYPE   28  130
     clus
vv    C7 MUTATED C7 WILD-TYPE
  NO           0           28
  YES         14          130

Clustering(103) Variable = KRTAP15-1 MUTATION ANALYSIS
D103V1, survival
                     sevent
clus2                  0  1
  KRTAP15-1 MUTATED    3  1
  KRTAP15-1 WILD-TYPE 96 49
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  4                 145 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
                  1                  49 
$`KRTAP15-1 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-6774 TCGA-67-3771 
        9.96        25.02         5.42         1.97 

$`KRTAP15-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               1.97                0.07 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
              25.02               85.32 
  KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE 
               7.69               14.01 
[1] "2.0 - 25.0 (7.7)"  "0.1 - 85.3 (14.0)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP15-1 WILD-TYPE"   "KRTAP15-1 MUTATED" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP15-1 WILD-TYPE" "KRTAP15-1 WILD-TYPE" 
[1] "hr=" "1.9"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      2    3
  KRTAP15-1 WILD-TYPE   91   76
        clus
vv       KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  FEMALE                 2                  91
  MALE                   3                  76
D103V4, continuous
D103V5, multiclass
D103V6, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  T1                 3                  38
  T2                 1                 107
  T3                 0                  14
  T4                 1                   7
D103V7, multiclass
       clus
vv      KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  N0                    2                  93
  N1                    2                  35
  N2+N3                 1                  34
D103V8, multiclass
    clus
vv   KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
D103V9, multiclass
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  I                   2                  86
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D103V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      0    5
  KRTAP15-1 WILD-TYPE   16  151
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D103V11, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP15-1 MUTATED      0    5
  KRTAP15-1 WILD-TYPE   28  139
     clus
vv    KRTAP15-1 MUTATED KRTAP15-1 WILD-TYPE
  NO                  0                  28
  YES                 5                 139

Clustering(104) Variable = SDK1 MUTATION ANALYSIS
D104V1, survival
                sevent
clus2             0  1
  SDK1 MUTATED    9  2
  SDK1 WILD-TYPE 90 48
  SDK1 MUTATED SDK1 WILD-TYPE 
            11            138 
  SDK1 MUTATED SDK1 WILD-TYPE 
             2             48 
$`SDK1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-44-2656 TCGA-49-6743 
       19.92         9.96        26.01        25.02        19.10        12.13 
TCGA-50-6590 TCGA-55-1595 TCGA-55-5899 TCGA-67-3771 TCGA-73-4666 
       42.31        48.62         2.86         1.97        20.28 

$`SDK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       30.02        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       38.73        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SDK1 MUTATED SDK1 WILD-TYPE 
          1.97           0.07 
  SDK1 MUTATED SDK1 WILD-TYPE 
         48.62          85.32 
  SDK1 MUTATED SDK1 WILD-TYPE 
         19.92          13.15 
[1] "2.0 - 48.6 (19.9)" "0.1 - 85.3 (13.2)"
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    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-91-6836 
"SDK1 WILD-TYPE" 
[1] "hr=" "1.8"
D104V2, continuous
D104V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED      7    7
  SDK1 WILD-TYPE   86   72
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE            7             86
  MALE              7             72
D104V4, continuous
[1] "Remove cluster labels:" "SDK1 MUTATED"          
clus
  SDK1 MUTATED SDK1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
D104V5, multiclass
D104V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            5             36
  T2            6            102
  T3            1             13
  T4            2              6
D104V7, multiclass
       clus
vv      SDK1 MUTATED SDK1 WILD-TYPE
  N0               8             87
  N1               4             33
  N2+N3            2             33
D104V8, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  M0           11            126
  M1            1              8
  MX            2             20
D104V9, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  I              7             81
  II             3             30
  III            3             36
  IV             1              8
D104V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED      1   13
  SDK1 WILD-TYPE   15  143
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  NO             1             15
  YES           13            143
D104V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED      2   12
  SDK1 WILD-TYPE   26  132
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  NO             2             26
  YES           12            132

Clustering(105) Variable = NHEDC1 MUTATION ANALYSIS
D105V1, survival
                  sevent
clus2               0  1
  NHEDC1 MUTATED    6  2
  NHEDC1 WILD-TYPE 93 48
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               8              141 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               2               48 
$`NHEDC1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-38-4632 TCGA-44-3918 
       37.02         9.96        29.95        85.32        44.61         6.44 
TCGA-49-6742 TCGA-64-5781 
       15.02        39.52 

$`NHEDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        11.64         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
            6.44             0.07 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
           85.32            83.84 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          33.485           13.150 
[1] "6.4 - 85.3 (33.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6836 
"NHEDC1 WILD-TYPE" 
[1] "hr=" "2.8"
D105V2, continuous
D105V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      4    5
  NHEDC1 WILD-TYPE   89   74
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D105V4, continuous
D105V5, multiclass
D105V6, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  T1              1               40
  T2              7              101
  T3              0               14
  T4              1                7
D105V7, multiclass
       clus
vv      NHEDC1 MUTATED NHEDC1 WILD-TYPE
  N0                 6               89
  N1                 3               34
  N2+N3              0               35
D105V8, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
D105V9, multiclass
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  I                5               83
  II               2               31
  III              1               38
  IV               1                8
D105V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      0    9
  NHEDC1 WILD-TYPE   16  147
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               0               16
  YES              9              147
D105V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      1    8
  NHEDC1 WILD-TYPE   27  136
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               1               27
  YES              8              136

Clustering(106) Variable = OR2M7 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    4  5
  OR2M7 WILD-TYPE 95 45
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              9             140 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              5              45 
$`OR2M7 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-6145 TCGA-44-6774 TCGA-49-4486 TCGA-50-5072 
        9.96        19.10         3.35         5.42        76.21         8.05 
TCGA-50-6593 TCGA-50-6595 TCGA-73-4658 
       11.05         6.21        52.57 

$`OR2M7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
        3.88        25.51        12.16        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           3.35            0.07 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          76.21           85.32 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
           9.96           14.04 
[1] "3.4 - 76.2 (10.0)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-91-6836 
"OR2M7 WILD-TYPE" 
[1] "hr=" "1.4"
D106V2, continuous
D106V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      5    4
  OR2M7 WILD-TYPE   88   75
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D106V4, continuous
D106V5, multiclass
D106V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             4              37
  T2             4             104
  T3             0              14
  T4             1               7
D106V7, multiclass
       clus
vv      OR2M7 MUTATED OR2M7 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             4              31
D106V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             0              22
D106V9, multiclass
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  I               4              84
  II              0              33
  III             5              34
  IV              0               9
D106V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    8
  OR2M7 WILD-TYPE   15  148
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1              15
  YES             8             148
D106V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      0    9
  OR2M7 WILD-TYPE   28  135
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              0              28
  YES             9             135

Clustering(107) Variable = SATB2 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  SATB2 MUTATED    9  4
  SATB2 WILD-TYPE 90 46
  SATB2 MUTATED SATB2 WILD-TYPE 
             13             136 
  SATB2 MUTATED SATB2 WILD-TYPE 
              4              46 
$`SATB2 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4420 TCGA-38-4629 TCGA-44-3918 TCGA-44-6777 
       19.92        47.05        29.95        28.37         6.44        32.45 
TCGA-50-5045 TCGA-50-5066 TCGA-50-6594 TCGA-64-1676 TCGA-64-5815 TCGA-73-4670 
       71.47         9.76        12.16        56.81         7.33         0.46 
TCGA-91-6836 
        0.36 

$`SATB2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
        8.02        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  SATB2 MUTATED SATB2 WILD-TYPE 
           0.36            0.07 
  SATB2 MUTATED SATB2 WILD-TYPE 
          71.47           85.32 
  SATB2 MUTATED SATB2 WILD-TYPE 
          19.92           13.51 
[1] "0.4 - 71.5 (19.9)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE"   "SATB2 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SATB2 WILD-TYPE"   "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "SATB2 MUTATED" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" "SATB2 WILD-TYPE" 
     TCGA-91-6836 
  "SATB2 MUTATED" 
[1] "hr=" "1.5"
D107V2, continuous
D107V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      8    7
  SATB2 WILD-TYPE   85   72
        clus
vv       SATB2 MUTATED SATB2 WILD-TYPE
  FEMALE             8              85
  MALE               7              72
D107V4, continuous
D107V5, multiclass
D107V6, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  T1             2              39
  T2             9              99
  T3             3              11
  T4             1               7
D107V7, multiclass
       clus
vv      SATB2 MUTATED SATB2 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             3              32
D107V8, multiclass
    clus
vv   SATB2 MUTATED SATB2 WILD-TYPE
  M0            12             125
  M1             1               8
  MX             2              20
D107V9, multiclass
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  I               9              79
  II              2              31
  III             3              36
  IV              1               8
D107V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      2   13
  SATB2 WILD-TYPE   14  143
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  NO              2              14
  YES            13             143
D107V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SATB2 MUTATED      2   13
  SATB2 WILD-TYPE   26  131
     clus
vv    SATB2 MUTATED SATB2 WILD-TYPE
  NO              2              26
  YES            13             131

Clustering(108) Variable = ODF1 MUTATION ANALYSIS
D108V1, survival
                sevent
clus2             0  1
  ODF1 MUTATED    3  1
  ODF1 WILD-TYPE 96 49
  ODF1 MUTATED ODF1 WILD-TYPE 
             4            145 
  ODF1 MUTATED ODF1 WILD-TYPE 
             1             49 
$`ODF1 MUTATED`
TCGA-05-4396 TCGA-44-2657 TCGA-67-3772 TCGA-91-6828 
        9.96        13.15         0.59         1.22 

$`ODF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        19.10        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ODF1 MUTATED ODF1 WILD-TYPE 
          0.59           0.07 
  ODF1 MUTATED ODF1 WILD-TYPE 
         13.15          85.32 
  ODF1 MUTATED ODF1 WILD-TYPE 
          5.59          14.07 
[1] "0.6 - 13.2 (5.6)"  "0.1 - 85.3 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6836 
"ODF1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6836 
"ODF1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ODF1 WILD-TYPE"   "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "ODF1 MUTATED" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" "ODF1 WILD-TYPE" 
    TCGA-91-6836 
"ODF1 WILD-TYPE" 
[1] "hr=" "3.2"
D108V2, continuous
D108V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODF1 MUTATED      2    2
  ODF1 WILD-TYPE   91   77
        clus
vv       ODF1 MUTATED ODF1 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D108V4, continuous
D108V5, multiclass
D108V6, multiclass
    clus
vv   ODF1 MUTATED ODF1 WILD-TYPE
  T1            1             40
  T2            2            106
  T3            0             14
  T4            1              7
D108V7, multiclass
       clus
vv      ODF1 MUTATED ODF1 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            0             35
D108V8, multiclass
    clus
vv   ODF1 MUTATED ODF1 WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
D108V9, multiclass
     clus
vv    ODF1 MUTATED ODF1 WILD-TYPE
  I              3             85
  II             0             33
  III            1             38
  IV             0              9
D108V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODF1 MUTATED      0    4
  ODF1 WILD-TYPE   16  152
     clus
vv    ODF1 MUTATED ODF1 WILD-TYPE
  NO             0             16
  YES            4            152
D108V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODF1 MUTATED      0    4
  ODF1 WILD-TYPE   28  140
     clus
vv    ODF1 MUTATED ODF1 WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(109) Variable = CMKLR1 MUTATION ANALYSIS
D109V1, survival
                  sevent
clus2               0  1
  CMKLR1 MUTATED    3  3
  CMKLR1 WILD-TYPE 96 47
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               6              143 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
               3               47 
$`CMKLR1 MUTATED`
TCGA-05-4397 TCGA-05-4424 TCGA-49-4507 TCGA-49-6744 TCGA-50-5939 TCGA-67-3770 
       24.03        30.02         8.81        12.99        15.12         0.99 

$`CMKLR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
            0.99             0.07 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
           30.02            85.32 
  CMKLR1 MUTATED CMKLR1 WILD-TYPE 
          14.055           13.870 
[1] "1.0 - 30.0 (14.1)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
  "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE"   "CMKLR1 MUTATED" "CMKLR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" "CMKLR1 WILD-TYPE" 
      TCGA-91-6836 
"CMKLR1 WILD-TYPE" 
[1] "hr=" "2.3"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      3    4
  CMKLR1 WILD-TYPE   90   75
        clus
vv       CMKLR1 MUTATED CMKLR1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D109V4, continuous
D109V5, multiclass
D109V6, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              2               12
  T4              0                8
D109V7, multiclass
       clus
vv      CMKLR1 MUTATED CMKLR1 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D109V8, multiclass
    clus
vv   CMKLR1 MUTATED CMKLR1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
D109V9, multiclass
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D109V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      1    6
  CMKLR1 WILD-TYPE   15  150
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  NO               1               15
  YES              6              150
D109V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CMKLR1 MUTATED      2    5
  CMKLR1 WILD-TYPE   26  139
     clus
vv    CMKLR1 MUTATED CMKLR1 WILD-TYPE
  NO               2               26
  YES              5              139

Clustering(110) Variable = EPHA7 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  EPHA7 MUTATED    8  2
  EPHA7 WILD-TYPE 91 48
  EPHA7 MUTATED EPHA7 WILD-TYPE 
             10             139 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
              2              48 
$`EPHA7 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-44-6144 TCGA-49-4505 
        9.96        30.02        26.01        19.10         0.30        14.07 
TCGA-50-5049 TCGA-55-1596 TCGA-55-6642 TCGA-67-3771 
       48.82        45.17        32.61         1.97 

$`EPHA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       38.73        48.62         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  EPHA7 MUTATED EPHA7 WILD-TYPE 
           0.30            0.07 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
          48.82           85.32 
  EPHA7 MUTATED EPHA7 WILD-TYPE 
         22.555          13.150 
[1] "0.3 - 48.8 (22.6)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "EPHA7 MUTATED" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" "EPHA7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE"   "EPHA7 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" "EPHA7 WILD-TYPE" 
     TCGA-91-6836 
"EPHA7 WILD-TYPE" 
[1] "hr=" "1.9"
D110V2, continuous
D110V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      3    8
  EPHA7 WILD-TYPE   90   71
        clus
vv       EPHA7 MUTATED EPHA7 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D110V4, continuous
D110V5, multiclass
D110V6, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  T1             2              39
  T2             7             101
  T3             1              13
  T4             1               7
D110V7, multiclass
       clus
vv      EPHA7 MUTATED EPHA7 WILD-TYPE
  N0                7              88
  N1                4              33
  N2+N3             0              35
D110V8, multiclass
    clus
vv   EPHA7 MUTATED EPHA7 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D110V9, multiclass
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  I               6              82
  II              4              29
  III             1              38
  IV              0               9
D110V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      1   10
  EPHA7 WILD-TYPE   15  146
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  NO              1              15
  YES            10             146
D110V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA7 MUTATED      0   11
  EPHA7 WILD-TYPE   28  133
     clus
vv    EPHA7 MUTATED EPHA7 WILD-TYPE
  NO              0              28
  YES            11             133

Clustering(111) Variable = OR2T3 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  OR2T3 MUTATED    6  1
  OR2T3 WILD-TYPE 93 49
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              7             142 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              1              49 
$`OR2T3 MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-38-4629 TCGA-50-5049 TCGA-55-1596 TCGA-55-5899 
       14.93        25.02        28.37        48.82        45.17         2.86 
TCGA-64-5778 
       30.44 

$`OR2T3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        71.47        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 
        6.21        33.37        23.05        38.73        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2T3 MUTATED OR2T3 WILD-TYPE 
           2.86            0.07 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          48.82           85.32 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          28.37           13.07 
[1] "2.9 - 48.8 (28.4)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-91-6836 
"OR2T3 WILD-TYPE" 
[1] "hr=" "3.4"
D111V2, continuous
D111V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      2    7
  OR2T3 WILD-TYPE   91   72
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  FEMALE             2              91
  MALE               7              72
D111V4, continuous
[1] "Remove cluster labels:" "OR2T3 MUTATED"         
clus
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
D111V5, multiclass
D111V6, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  T1             2              39
  T2             5             103
  T3             2              12
  T4             0               8
D111V7, multiclass
       clus
vv      OR2T3 MUTATED OR2T3 WILD-TYPE
  N0                5              90
  N1                4              33
  N2+N3             0              35
D111V8, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             1              21
D111V9, multiclass
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  I               4              84
  II              5              28
  III             0              39
  IV              0               9
D111V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      1    8
  OR2T3 WILD-TYPE   15  148
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  NO              1              15
  YES             8             148
D111V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      0    9
  OR2T3 WILD-TYPE   28  135
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  NO              0              28
  YES             9             135

Clustering(112) Variable = OLAH MUTATION ANALYSIS
D112V1, survival
                sevent
clus2             0  1
  OLAH MUTATED    5  1
  OLAH WILD-TYPE 94 49
  OLAH MUTATED OLAH WILD-TYPE 
             6            143 
  OLAH MUTATED OLAH WILD-TYPE 
             1             49 
$`OLAH MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-55-5899 TCGA-64-1678 TCGA-64-5779 TCGA-67-3771 
       37.02         9.96         2.86        39.09        16.67         1.97 

$`OLAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       20.65        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OLAH MUTATED OLAH WILD-TYPE 
          1.97           0.07 
  OLAH MUTATED OLAH WILD-TYPE 
         39.09          85.32 
  OLAH MUTATED OLAH WILD-TYPE 
        13.315         13.870 
[1] "2.0 - 39.1 (13.3)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6836 
"OLAH WILD-TYPE" 
[1] "hr=" "1.8"
D112V2, continuous
D112V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      3    4
  OLAH WILD-TYPE   90   75
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D112V4, continuous
D112V5, multiclass
D112V6, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  T1            2             39
  T2            3            105
  T3            0             14
  T4            2              6
D112V7, multiclass
       clus
vv      OLAH MUTATED OLAH WILD-TYPE
  N0               3             92
  N1               2             35
  N2+N3            2             33
D112V8, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  M0            7            130
  M1            0              9
  MX            0             22
D112V9, multiclass
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  I              3             85
  II             1             32
  III            3             36
  IV             0              9
D112V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      0    7
  OLAH WILD-TYPE   16  149
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             0             16
  YES            7            149
D112V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      2    5
  OLAH WILD-TYPE   26  139
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             2             26
  YES            5            139

Clustering(113) Variable = TRIM72 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  TRIM72 MUTATED    4  2
  TRIM72 WILD-TYPE 95 48
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               6              143 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               2               48 
$`TRIM72 MUTATED`
TCGA-05-4390 TCGA-38-6178 TCGA-50-5045 TCGA-50-5933 TCGA-64-5815 TCGA-73-4666 
       37.02         5.19        71.47        77.88         7.33        20.28 

$`TRIM72 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TRIM72 MUTATED TRIM72 WILD-TYPE 
            5.19             0.07 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
           77.88            85.32 
  TRIM72 MUTATED TRIM72 WILD-TYPE 
           28.65            13.15 
[1] "5.2 - 77.9 (28.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE"   "TRIM72 MUTATED" "TRIM72 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-91-6836 
"TRIM72 WILD-TYPE" 
[1] "hr=" "2.5"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM72 MUTATED      4    2
  TRIM72 WILD-TYPE   89   77
        clus
vv       TRIM72 MUTATED TRIM72 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D113V4, continuous
[1] "Remove cluster labels:" "TRIM72 MUTATED"        
clus
  TRIM72 MUTATED TRIM72 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" "TRIM72 WILD-TYPE" 
D113V5, multiclass
D113V6, multiclass
    clus
vv   TRIM72 MUTATED TRIM72 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D113V7, multiclass
       clus
vv      TRIM72 MUTATED TRIM72 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              2               33
D113V8, multiclass
    clus
vv   TRIM72 MUTATED TRIM72 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              0               22
D113V9, multiclass
     clus
vv    TRIM72 MUTATED TRIM72 WILD-TYPE
  I                2               86
  II               1               32
  III              2               37
  IV               1                8
D113V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM72 MUTATED      3    3
  TRIM72 WILD-TYPE   13  153
     clus
vv    TRIM72 MUTATED TRIM72 WILD-TYPE
  NO               3               13
  YES              3              153
D113V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM72 MUTATED      3    3
  TRIM72 WILD-TYPE   25  141
     clus
vv    TRIM72 MUTATED TRIM72 WILD-TYPE
  NO               3               25
  YES              3              141

Clustering(114) Variable = MFAP1 MUTATION ANALYSIS
D114V1, survival
                 sevent
clus2              0  1
  MFAP1 MUTATED    2  1
  MFAP1 WILD-TYPE 97 49
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              3             146 
  MFAP1 MUTATED MFAP1 WILD-TYPE 
              1              49 
$`MFAP1 MUTATED`
TCGA-05-4396 TCGA-49-6743 TCGA-50-5049 
        9.96        12.13        48.82 

$`MFAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  MFAP1 MUTATED MFAP1 WILD-TYPE 
           9.96            0.07 
  MFAP1 MUTATED MFAP1 WILD-TYPE 
          48.82           85.32 
  MFAP1 MUTATED MFAP1 WILD-TYPE 
          12.13           13.94 
[1] "10.0 - 48.8 (12.1)" "0.1 - 85.3 (13.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MFAP1 WILD-TYPE"   "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE"   "MFAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6836 
"MFAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MFAP1 WILD-TYPE"   "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE"   "MFAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6836 
"MFAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"MFAP1 WILD-TYPE"   "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE"   "MFAP1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "MFAP1 MUTATED" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" "MFAP1 WILD-TYPE" 
     TCGA-91-6836 
"MFAP1 WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFAP1 MUTATED      1    2
  MFAP1 WILD-TYPE   92   77
        clus
vv       MFAP1 MUTATED MFAP1 WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D114V4, continuous
D114V5, multiclass
D114V6, multiclass
    clus
vv   MFAP1 MUTATED MFAP1 WILD-TYPE
  T1             1              40
  T2             1             107
  T3             0              14
  T4             1               7
D114V7, multiclass
       clus
vv      MFAP1 MUTATED MFAP1 WILD-TYPE
  N0                1              94
  N1                1              36
  N2+N3             1              34
D114V8, multiclass
    clus
vv   MFAP1 MUTATED MFAP1 WILD-TYPE
  M0             2             135
  M1             0               9
  MX             1              21
D114V9, multiclass
     clus
vv    MFAP1 MUTATED MFAP1 WILD-TYPE
  I               1              87
  II              0              33
  III             2              37
  IV              0               9
D114V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFAP1 MUTATED      1    2
  MFAP1 WILD-TYPE   15  154
     clus
vv    MFAP1 MUTATED MFAP1 WILD-TYPE
  NO              1              15
  YES             2             154
D114V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFAP1 MUTATED      1    2
  MFAP1 WILD-TYPE   27  142
     clus
vv    MFAP1 MUTATED MFAP1 WILD-TYPE
  NO              1              27
  YES             2             142

Clustering(115) Variable = OR2W5 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2              0  1
  OR2W5 MUTATED    5  2
  OR2W5 WILD-TYPE 94 48
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              7             142 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
              2              48 
$`OR2W5 MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-44-2662 TCGA-49-6743 TCGA-50-5044 TCGA-50-5935 
       14.93        25.02        15.78        12.13        20.48        21.47 
TCGA-67-3771 
        1.97 

$`OR2W5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
        8.05         9.27         8.78        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR2W5 MUTATED OR2W5 WILD-TYPE 
           1.97            0.07 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          25.02           85.32 
  OR2W5 MUTATED OR2W5 WILD-TYPE 
          15.78           13.15 
[1] "2.0 - 25.0 (15.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2W5 MUTATED" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" "OR2W5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE"   "OR2W5 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" "OR2W5 WILD-TYPE" 
     TCGA-91-6836 
"OR2W5 WILD-TYPE" 
[1] "hr=" "1.4"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      5    2
  OR2W5 WILD-TYPE   88   77
        clus
vv       OR2W5 MUTATED OR2W5 WILD-TYPE
  FEMALE             5              88
  MALE               2              77
D115V4, continuous
D115V5, multiclass
D115V6, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             0              14
  T4             1               7
D115V7, multiclass
       clus
vv      OR2W5 MUTATED OR2W5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             1              34
D115V8, multiclass
    clus
vv   OR2W5 MUTATED OR2W5 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D115V9, multiclass
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D115V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      1    6
  OR2W5 WILD-TYPE   15  150
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  NO              1              15
  YES             6             150
D115V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2W5 MUTATED      2    5
  OR2W5 WILD-TYPE   26  139
     clus
vv    OR2W5 MUTATED OR2W5 WILD-TYPE
  NO              2              26
  YES             5             139

Clustering(116) Variable = PI15 MUTATION ANALYSIS
D116V1, survival
                sevent
clus2             0  1
  PI15 MUTATED    6  1
  PI15 WILD-TYPE 93 49
  PI15 MUTATED PI15 WILD-TYPE 
             7            142 
  PI15 MUTATED PI15 WILD-TYPE 
             1             49 
$`PI15 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-55-1594 TCGA-55-1595 TCGA-64-1678 TCGA-91-6828 
        9.96        26.01        38.73        48.62        39.09         1.22 
TCGA-91-6836 
        0.36 

$`PI15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 
       11.05        12.16         6.21        33.37        23.05        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        41.33         1.28         1.15 

  PI15 MUTATED PI15 WILD-TYPE 
          0.36           0.07 
  PI15 MUTATED PI15 WILD-TYPE 
         48.62          85.32 
  PI15 MUTATED PI15 WILD-TYPE 
         26.01          13.51 
[1] "0.4 - 48.6 (26.0)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PI15 WILD-TYPE"   "PI15 MUTATED"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PI15 WILD-TYPE" "PI15 WILD-TYPE"   "PI15 MUTATED" "PI15 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "PI15 MUTATED" "PI15 WILD-TYPE" "PI15 WILD-TYPE" "PI15 WILD-TYPE" 
    TCGA-91-6836 
  "PI15 MUTATED" 
[1] "hr=" "2.9"
D116V2, continuous
D116V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      4    3
  PI15 WILD-TYPE   89   76
        clus
vv       PI15 MUTATED PI15 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D116V4, continuous
D116V5, multiclass
D116V6, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            1              7
D116V7, multiclass
       clus
vv      PI15 MUTATED PI15 WILD-TYPE
  N0               4             91
  N1               2             35
  N2+N3            1             34
D116V8, multiclass
    clus
vv   PI15 MUTATED PI15 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
D116V9, multiclass
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  I              3             85
  II             2             31
  III            2             37
  IV             0              9
D116V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      0    7
  PI15 WILD-TYPE   16  149
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  NO             0             16
  YES            7            149
D116V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PI15 MUTATED      1    6
  PI15 WILD-TYPE   27  138
     clus
vv    PI15 MUTATED PI15 WILD-TYPE
  NO             1             27
  YES            6            138

Clustering(117) Variable = ARHGAP36 MUTATION ANALYSIS
D117V1, survival
                    sevent
clus2                 0  1
  ARHGAP36 MUTATED    7  3
  ARHGAP36 WILD-TYPE 92 47
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                10                139 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 3                 47 
$`ARHGAP36 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-2657 TCGA-44-3918 TCGA-44-6777 TCGA-50-5049 
       19.92         9.96        13.15         6.44        32.45        48.82 
TCGA-55-1592 TCGA-55-5899 TCGA-64-5778 TCGA-91-6836 
       23.05         2.86        30.44         0.36 

$`ARHGAP36 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
              0.36               0.07 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
             48.82              85.32 
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
            16.535             13.870 
[1] "0.4 - 48.8 (16.5)" "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
  "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" "ARHGAP36 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ARHGAP36 WILD-TYPE"   "ARHGAP36 MUTATED" 
[1] "hr=" "1"  
D117V2, continuous
D117V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      6    7
  ARHGAP36 WILD-TYPE   87   72
        clus
vv       ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  FEMALE                6                 87
  MALE                  7                 72
D117V4, continuous
[1] "Remove cluster labels:" "ARHGAP36 MUTATED"      
clus
  ARHGAP36 MUTATED ARHGAP36 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-64-1677         TCGA-71-6725         TCGA-73-4659 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ARHGAP36 WILD-TYPE" "ARHGAP36 WILD-TYPE" 
D117V5, multiclass
D117V6, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  T1                2                 39
  T2                8                100
  T3                2                 12
  T4                1                  7
D117V7, multiclass
       clus
vv      ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  N0                   8                 87
  N1                   2                 35
  N2+N3                1                 34
D117V8, multiclass
    clus
vv   ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  M0               10                127
  M1                0                  9
  MX                3                 19
D117V9, multiclass
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  I                 10                 78
  II                 1                 32
  III                2                 37
  IV                 0                  9
D117V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      2   11
  ARHGAP36 WILD-TYPE   14  145
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  NO                 2                 14
  YES               11                145
D117V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ARHGAP36 MUTATED      0   13
  ARHGAP36 WILD-TYPE   28  131
     clus
vv    ARHGAP36 MUTATED ARHGAP36 WILD-TYPE
  NO                 0                 28
  YES               13                131

Clustering(118) Variable = FABP12 MUTATION ANALYSIS
D118V1, survival
                  sevent
clus2               0  1
  FABP12 MUTATED    1  1
  FABP12 WILD-TYPE 98 49
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               49 
$`FABP12 MUTATED`
TCGA-35-4122 TCGA-50-6593 
        7.36        11.05 

$`FABP12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  FABP12 MUTATED FABP12 WILD-TYPE 
            7.36             0.07 
  FABP12 MUTATED FABP12 WILD-TYPE 
           11.05            85.32 
  FABP12 MUTATED FABP12 WILD-TYPE 
           9.205           14.010 
[1] "7.4 - 11.1 (9.2)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE"   "FABP12 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
  "FABP12 MUTATED" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-1592       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6543 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D118V2, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               2              153 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4422 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4424       TCGA-05-4425       TCGA-05-4426       TCGA-05-4427 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4123 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-49-6745       TCGA-49-6767       TCGA-50-5044       TCGA-50-5045 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-1594 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6642       TCGA-64-1676       TCGA-64-1677 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-3774       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4676       TCGA-73-4677       TCGA-86-6562 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-91-6836 
"FABP12 WILD-TYPE" 
D118V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      1    2
  FABP12 WILD-TYPE   92   77
        clus
vv       FABP12 MUTATED FABP12 WILD-TYPE
  FEMALE              1               92
  MALE                2               77
D118V4, continuous
[1] "Remove cluster labels:" "FABP12 MUTATED"        
clus
  FABP12 MUTATED FABP12 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FABP12 WILD-TYPE" "FABP12 WILD-TYPE" "FABP12 WILD-TYPE" 
D118V5, multiclass
D118V6, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  T1              2               39
  T2              1              107
  T3              0               14
  T4              0                8
D118V7, multiclass
       clus
vv      FABP12 MUTATED FABP12 WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
D118V8, multiclass
    clus
vv   FABP12 MUTATED FABP12 WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
D118V9, multiclass
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  I                1               87
  II               1               32
  III              1               38
  IV               0                9
D118V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      0    3
  FABP12 WILD-TYPE   16  153
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  NO               0               16
  YES              3              153
D118V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FABP12 MUTATED      0    3
  FABP12 WILD-TYPE   28  141
     clus
vv    FABP12 MUTATED FABP12 WILD-TYPE
  NO               0               28
  YES              3              141

Clustering(119) Variable = SEMA3A MUTATION ANALYSIS
D119V1, survival
                  sevent
clus2               0  1
  SEMA3A MUTATED    6  3
  SEMA3A WILD-TYPE 93 47
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               9              140 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
               3               47 
$`SEMA3A MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-44-2656 TCGA-44-6145 TCGA-49-6743 
       19.92         9.96         8.98        19.10         3.35        12.13 
TCGA-49-6745 TCGA-50-6594 TCGA-64-5781 
        4.93        12.16        39.52 

$`SEMA3A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       43.20        15.02        12.99        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SEMA3A MUTATED SEMA3A WILD-TYPE 
            3.35             0.07 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           39.52            85.32 
  SEMA3A MUTATED SEMA3A WILD-TYPE 
           12.13            14.04 
[1] "3.4 - 39.5 (12.1)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE"   "SEMA3A MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SEMA3A WILD-TYPE"   "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SEMA3A MUTATED" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" "SEMA3A WILD-TYPE" 
      TCGA-91-6836 
"SEMA3A WILD-TYPE" 
[1] "hr=" "1.7"
D119V2, continuous
D119V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      4    6
  SEMA3A WILD-TYPE   89   73
        clus
vv       SEMA3A MUTATED SEMA3A WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D119V4, continuous
D119V5, multiclass
D119V6, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  T1              3               38
  T2              4              104
  T3              2               12
  T4              1                7
D119V7, multiclass
       clus
vv      SEMA3A MUTATED SEMA3A WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              4               31
D119V8, multiclass
    clus
vv   SEMA3A MUTATED SEMA3A WILD-TYPE
  M0              8              129
  M1              0                9
  MX              2               20
D119V9, multiclass
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  I                4               84
  II               1               32
  III              5               34
  IV               0                9
D119V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      0   10
  SEMA3A WILD-TYPE   16  146
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  NO               0               16
  YES             10              146
D119V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA3A MUTATED      2    8
  SEMA3A WILD-TYPE   26  136
     clus
vv    SEMA3A MUTATED SEMA3A WILD-TYPE
  NO               2               26
  YES              8              136

Clustering(120) Variable = UGT2B10 MUTATION ANALYSIS
D120V1, survival
                   sevent
clus2                0  1
  UGT2B10 MUTATED    9  2
  UGT2B10 WILD-TYPE 90 48
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
               11               138 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
                2                48 
$`UGT2B10 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4424 TCGA-05-4432 TCGA-44-3396 TCGA-44-4112 
       19.92         9.96        30.02        25.02        10.22         4.60 
TCGA-49-6744 TCGA-50-5066 TCGA-55-5899 TCGA-64-5775 TCGA-64-5815 
       12.99         9.76         2.86         0.10         7.33 

$`UGT2B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09         8.32         6.44         6.21         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             0.10              0.07 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
            30.02             85.32 
  UGT2B10 MUTATED UGT2B10 WILD-TYPE 
             9.96             14.50 
[1] "0.1 - 30.0 (10.0)" "0.1 - 85.3 (14.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"UGT2B10 WILD-TYPE"   "UGT2B10 MUTATED" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" "UGT2B10 WILD-TYPE" 
       TCGA-91-6836 
"UGT2B10 WILD-TYPE" 
[1] "hr=" "1.1"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      3    8
  UGT2B10 WILD-TYPE   90   71
        clus
vv       UGT2B10 MUTATED UGT2B10 WILD-TYPE
  FEMALE               3                90
  MALE                 8                71
D120V4, continuous
D120V5, multiclass
D120V6, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  T1               1                40
  T2               7               101
  T3               1                13
  T4               2                 6
D120V7, multiclass
       clus
vv      UGT2B10 MUTATED UGT2B10 WILD-TYPE
  N0                  5                90
  N1                  5                32
  N2+N3               1                34
D120V8, multiclass
    clus
vv   UGT2B10 MUTATED UGT2B10 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D120V9, multiclass
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  I                 4                84
  II                4                29
  III               3                36
  IV                0                 9
D120V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      0   11
  UGT2B10 WILD-TYPE   16  145
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  NO                0                16
  YES              11               145
D120V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  UGT2B10 MUTATED      4    7
  UGT2B10 WILD-TYPE   24  137
     clus
vv    UGT2B10 MUTATED UGT2B10 WILD-TYPE
  NO                4                24
  YES               7               137

Clustering(121) Variable = OR10K2 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  OR10K2 MUTATED    2  5
  OR10K2 WILD-TYPE 97 45
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               7              142 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
               5               45 
$`OR10K2 MUTATED`
TCGA-44-2659 TCGA-49-4487 TCGA-49-4507 TCGA-49-6743 TCGA-50-5931 TCGA-50-5933 
       17.39        28.11         8.81        12.13         8.78        77.88 
TCGA-50-6590 
       42.31 

$`OR10K2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10K2 MUTATED OR10K2 WILD-TYPE 
            8.78             0.07 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           77.88            85.32 
  OR10K2 MUTATED OR10K2 WILD-TYPE 
           17.39            13.51 
[1] "8.8 - 77.9 (17.4)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE"   "OR10K2 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10K2 WILD-TYPE"   "OR10K2 MUTATED" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" "OR10K2 WILD-TYPE" 
      TCGA-91-6836 
"OR10K2 WILD-TYPE" 
[1] "hr=" "1.4"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      6    3
  OR10K2 WILD-TYPE   87   76
        clus
vv       OR10K2 MUTATED OR10K2 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D121V4, continuous
D121V5, multiclass
D121V6, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              2               12
  T4              1                7
D121V7, multiclass
       clus
vv      OR10K2 MUTATED OR10K2 WILD-TYPE
  N0                 4               91
  N1                 2               35
  N2+N3              3               32
D121V8, multiclass
    clus
vv   OR10K2 MUTATED OR10K2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              1               21
D121V9, multiclass
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  I                4               84
  II               1               32
  III              3               36
  IV               1                8
D121V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      2    7
  OR10K2 WILD-TYPE   14  149
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  NO               2               14
  YES              7              149
D121V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10K2 MUTATED      3    6
  OR10K2 WILD-TYPE   25  138
     clus
vv    OR10K2 MUTATED OR10K2 WILD-TYPE
  NO               3               25
  YES              6              138

Clustering(122) Variable = LIPI MUTATION ANALYSIS
D122V1, survival
                sevent
clus2             0  1
  LIPI MUTATED    6  1
  LIPI WILD-TYPE 93 49
  LIPI MUTATED LIPI WILD-TYPE 
             7            142 
  LIPI MUTATED LIPI WILD-TYPE 
             1             49 
$`LIPI MUTATED`
TCGA-05-5423 TCGA-38-4626 TCGA-44-6774 TCGA-44-6777 TCGA-55-1594 TCGA-55-1596 
        4.96        85.32         5.42        32.45        38.73        45.17 
TCGA-67-3771 
        1.97 

$`LIPI WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
        6.21        33.37        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  LIPI MUTATED LIPI WILD-TYPE 
          1.97           0.07 
  LIPI MUTATED LIPI WILD-TYPE 
         85.32          83.84 
  LIPI MUTATED LIPI WILD-TYPE 
         32.45          13.51 
[1] "2.0 - 85.3 (32.5)" "0.1 - 83.8 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "LIPI MUTATED" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"LIPI WILD-TYPE"   "LIPI MUTATED" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE"   "LIPI MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" "LIPI WILD-TYPE" 
    TCGA-91-6836 
"LIPI WILD-TYPE" 
[1] "hr=" "4.7"
D122V2, continuous
D122V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      4    3
  LIPI WILD-TYPE   89   76
        clus
vv       LIPI MUTATED LIPI WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D122V4, continuous
D122V5, multiclass
D122V6, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  T1            2             39
  T2            5            103
  T3            0             14
  T4            0              8
D122V7, multiclass
       clus
vv      LIPI MUTATED LIPI WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            2             33
D122V8, multiclass
    clus
vv   LIPI MUTATED LIPI WILD-TYPE
  M0            6            131
  M1            0              9
  MX            1             21
D122V9, multiclass
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  I              2             86
  II             3             30
  III            2             37
  IV             0              9
D122V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      1    6
  LIPI WILD-TYPE   15  150
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  NO             1             15
  YES            6            150
D122V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIPI MUTATED      0    7
  LIPI WILD-TYPE   28  137
     clus
vv    LIPI MUTATED LIPI WILD-TYPE
  NO             0             28
  YES            7            137

Clustering(123) Variable = CLEC12B MUTATION ANALYSIS
D123V1, survival
                   sevent
clus2                0  1
  CLEC12B MUTATED    1  2
  CLEC12B WILD-TYPE 98 48
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               146 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                2                48 
$`CLEC12B MUTATED`
TCGA-44-2657 TCGA-49-4488 TCGA-49-4510 
       13.15        28.57        29.46 

$`CLEC12B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CLEC12B MUTATED CLEC12B WILD-TYPE 
            13.15              0.07 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
            29.46             85.32 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
            28.57             13.51 
[1] "13.2 - 29.5 (28.6)" "0.1 - 85.3 (13.5)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
[1] "hr=" "1.9"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC12B MUTATED      3    0
  CLEC12B WILD-TYPE   90   79
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  FEMALE               3                90
  MALE                 0                79
D123V4, continuous
D123V5, multiclass
D123V6, multiclass
    clus
vv   CLEC12B MUTATED CLEC12B WILD-TYPE
  T1               1                40
  T2               2               106
  T3               0                14
  T4               0                 8
D123V7, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                2               165 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4403 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4422        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4426        TCGA-05-4427        TCGA-05-4430 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4432        TCGA-05-4433        TCGA-05-4434        TCGA-05-5420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5715        TCGA-35-3615        TCGA-35-4122        TCGA-35-4123 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-4627 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4628        TCGA-38-4629        TCGA-38-4630        TCGA-38-4631 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4632        TCGA-38-6178        TCGA-44-2655        TCGA-44-2656 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4486        TCGA-49-4487        TCGA-49-4490 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-1592        TCGA-55-1594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1676        TCGA-64-1677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-5774        TCGA-64-5775 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6217        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6211        TCGA-75-6212        TCGA-80-5611        TCGA-86-6562 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
D123V8, multiclass
    clus
vv   CLEC12B MUTATED CLEC12B WILD-TYPE
  M0               2               135
  M1               0                 9
  MX               1                21
D123V9, multiclass
     clus
vv    CLEC12B MUTATED CLEC12B WILD-TYPE
  I                 2                86
  II                1                32
  III               0                39
  IV                0                 9
D123V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC12B MUTATED      0    3
  CLEC12B WILD-TYPE   16  153
     clus
vv    CLEC12B MUTATED CLEC12B WILD-TYPE
  NO                0                16
  YES               3               153
D123V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC12B MUTATED      0    3
  CLEC12B WILD-TYPE   28  141
     clus
vv    CLEC12B MUTATED CLEC12B WILD-TYPE
  NO                0                28
  YES               3               141

Clustering(124) Variable = WT1 MUTATION ANALYSIS
D124V1, survival
               sevent
clus2            0  1
  WT1 MUTATED    3  4
  WT1 WILD-TYPE 96 46
  WT1 MUTATED WT1 WILD-TYPE 
            7           142 
  WT1 MUTATED WT1 WILD-TYPE 
            4            46 
$`WT1 MUTATED`
TCGA-05-4382 TCGA-49-4487 TCGA-49-4505 TCGA-50-5941 TCGA-55-1592 TCGA-64-5775 
       19.92        28.11        14.07         9.37        23.05         0.10 
TCGA-64-5781 
       39.52 

$`WT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  WT1 MUTATED WT1 WILD-TYPE 
         0.10          0.07 
  WT1 MUTATED WT1 WILD-TYPE 
        39.52         85.32 
  WT1 MUTATED WT1 WILD-TYPE 
        19.92         13.15 
[1] "0.1 - 39.5 (19.9)" "0.1 - 85.3 (13.2)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"WT1 WILD-TYPE"   "WT1 MUTATED" "WT1 WILD-TYPE" "WT1 WILD-TYPE"   "WT1 MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" "WT1 WILD-TYPE" 
[1] "hr=" "2.2"
D124V2, continuous
D124V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  WT1 MUTATED      4    3
  WT1 WILD-TYPE   89   76
        clus
vv       WT1 MUTATED WT1 WILD-TYPE
  FEMALE           4            89
  MALE             3            76
D124V4, continuous
D124V5, multiclass
D124V6, multiclass
    clus
vv   WT1 MUTATED WT1 WILD-TYPE
  T1           1            40
  T2           5           103
  T3           0            14
  T4           1             7
D124V7, multiclass
       clus
vv      WT1 MUTATED WT1 WILD-TYPE
  N0              5            90
  N1              1            36
  N2+N3           1            34
D124V8, multiclass
    clus
vv   WT1 MUTATED WT1 WILD-TYPE
  M0           7           130
  M1           0             9
  MX           0            22
D124V9, multiclass
     clus
vv    WT1 MUTATED WT1 WILD-TYPE
  I             4            84
  II            1            32
  III           2            37
  IV            0             9
D124V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  WT1 MUTATED      0    7
  WT1 WILD-TYPE   16  149
     clus
vv    WT1 MUTATED WT1 WILD-TYPE
  NO            0            16
  YES           7           149
D124V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  WT1 MUTATED      0    7
  WT1 WILD-TYPE   28  137
     clus
vv    WT1 MUTATED WT1 WILD-TYPE
  NO            0            28
  YES           7           137

Clustering(125) Variable = OR5T2 MUTATION ANALYSIS
D125V1, survival
                 sevent
clus2              0  1
  OR5T2 MUTATED    7  1
  OR5T2 WILD-TYPE 92 49
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              8             141 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              49 
$`OR5T2 MUTATED`
TCGA-05-4390 TCGA-05-4405 TCGA-44-6147 TCGA-50-5045 TCGA-64-5781 TCGA-67-3770 
       37.02        20.05         7.76        71.47        39.52         0.99 
TCGA-73-4666 TCGA-91-6831 
       20.28         1.28 

$`OR5T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        20.48        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       41.33         1.15         0.36 

  OR5T2 MUTATED OR5T2 WILD-TYPE 
           0.99            0.07 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
          71.47           85.32 
  OR5T2 MUTATED OR5T2 WILD-TYPE 
         20.165          13.150 
[1] "1.0 - 71.5 (20.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR5T2 MUTATED" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE"   "OR5T2 MUTATED" "OR5T2 WILD-TYPE" 
     TCGA-91-6836 
"OR5T2 WILD-TYPE" 
[1] "hr=" "3.6"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      7    1
  OR5T2 WILD-TYPE   86   78
        clus
vv       OR5T2 MUTATED OR5T2 WILD-TYPE
  FEMALE             7              86
  MALE               1              78
D125V4, continuous
[1] "Remove cluster labels:" "OR5T2 MUTATED"         
clus
  OR5T2 MUTATED OR5T2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" "OR5T2 WILD-TYPE" 
D125V5, multiclass
D125V6, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  T1             3              38
  T2             5             103
  T3             0              14
  T4             0               8
D125V7, multiclass
       clus
vv      OR5T2 MUTATED OR5T2 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
D125V8, multiclass
    clus
vv   OR5T2 MUTATED OR5T2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             1              21
D125V9, multiclass
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  I               7              81
  II              0              33
  III             0              39
  IV              1               8
D125V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      2    6
  OR5T2 WILD-TYPE   14  150
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  NO              2              14
  YES             6             150
D125V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T2 MUTATED      1    7
  OR5T2 WILD-TYPE   27  137
     clus
vv    OR5T2 MUTATED OR5T2 WILD-TYPE
  NO              1              27
  YES             7             137

Clustering(126) Variable = PYHIN1 MUTATION ANALYSIS
D126V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    2  3
  PYHIN1 WILD-TYPE 97 47
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               5              144 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               47 
$`PYHIN1 MUTATED`
TCGA-05-4397 TCGA-38-4626 TCGA-64-5781 TCGA-73-4677 TCGA-91-6829 
       24.03        85.32        39.52         1.25        41.33 

$`PYHIN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.32         4.01         1.22         1.28         1.15         0.36 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            1.25             0.07 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           85.32            83.84 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
           39.52            13.15 
[1] "1.2 - 85.3 (39.5)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-91-6836 
"PYHIN1 WILD-TYPE" 
[1] "hr=" "1.3"
D126V2, continuous
D126V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      3    4
  PYHIN1 WILD-TYPE   90   75
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D126V4, continuous
D126V5, multiclass
D126V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              0               41
  T2              6              102
  T3              1               13
  T4              0                8
D126V7, multiclass
       clus
vv      PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              0               35
D126V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D126V9, multiclass
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                4               84
  II               3               30
  III              0               39
  IV               0                9
D126V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0    7
  PYHIN1 WILD-TYPE   16  149
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0               16
  YES              7              149
D126V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0    7
  PYHIN1 WILD-TYPE   28  137
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0               28
  YES              7              137

Clustering(127) Variable = CYP4V2 MUTATION ANALYSIS
D127V1, survival
                  sevent
clus2               0  1
  CYP4V2 MUTATED    2  4
  CYP4V2 WILD-TYPE 97 46
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              143 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               4               46 
$`CYP4V2 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-38-4632 TCGA-49-4501 TCGA-55-6712 TCGA-91-6829 
       14.01         9.96        44.61        46.72         0.79        41.33 

$`CYP4V2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
            0.79             0.07 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           46.72            85.32 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           27.67            13.15 
[1] "0.8 - 46.7 (27.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-91-6836 
"CYP4V2 WILD-TYPE" 
[1] "hr=" "1.5"
D127V2, continuous
D127V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      1    5
  CYP4V2 WILD-TYPE   92   74
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D127V4, continuous
D127V5, multiclass
D127V6, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              0               14
  T4              1                7
D127V7, multiclass
       clus
vv      CYP4V2 MUTATED CYP4V2 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
D127V8, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  M0              3              134
  M1              1                8
  MX              2               20
D127V9, multiclass
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  I                2               86
  II               0               33
  III              2               37
  IV               1                8
D127V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      0    6
  CYP4V2 WILD-TYPE   16  150
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  NO               0               16
  YES              6              150
D127V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      0    6
  CYP4V2 WILD-TYPE   28  138
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  NO               0               28
  YES              6              138

Clustering(128) Variable = OR5D16 MUTATION ANALYSIS
D128V1, survival
                  sevent
clus2               0  1
  OR5D16 MUTATED    5  2
  OR5D16 WILD-TYPE 94 48
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               7              142 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
               2               48 
$`OR5D16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4427 TCGA-49-4494 TCGA-55-5899 TCGA-64-1676 
       19.92         9.96        26.01        35.54         2.86        56.81 
TCGA-91-6836 
        0.36 

$`OR5D16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  OR5D16 MUTATED OR5D16 WILD-TYPE 
            0.36             0.07 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           56.81            85.32 
  OR5D16 MUTATED OR5D16 WILD-TYPE 
           19.92            13.51 
[1] "0.4 - 56.8 (19.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE"   "OR5D16 MUTATED" "OR5D16 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR5D16 MUTATED" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" "OR5D16 WILD-TYPE" 
      TCGA-91-6836 
  "OR5D16 MUTATED" 
[1] "hr=" "1.3"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      2    5
  OR5D16 WILD-TYPE   91   74
        clus
vv       OR5D16 MUTATED OR5D16 WILD-TYPE
  FEMALE              2               91
  MALE                5               74
D128V4, continuous
D128V5, multiclass
D128V6, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              1               13
  T4              1                7
D128V7, multiclass
       clus
vv      OR5D16 MUTATED OR5D16 WILD-TYPE
  N0                 3               92
  N1                 3               34
  N2+N3              1               34
D128V8, multiclass
    clus
vv   OR5D16 MUTATED OR5D16 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              1               21
D128V9, multiclass
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  I                4               84
  II               1               32
  III              2               37
  IV               0                9
D128V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      0    7
  OR5D16 WILD-TYPE   16  149
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  NO               0               16
  YES              7              149
D128V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D16 MUTATED      0    7
  OR5D16 WILD-TYPE   28  137
     clus
vv    OR5D16 MUTATED OR5D16 WILD-TYPE
  NO               0               28
  YES              7              137

Clustering(129) Variable = SLC35F1 MUTATION ANALYSIS
D129V1, survival
                   sevent
clus2                0  1
  SLC35F1 MUTATED    6  2
  SLC35F1 WILD-TYPE 93 48
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                8               141 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                2                48 
$`SLC35F1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4432 TCGA-35-4122 TCGA-50-5066 
       19.92         9.96        24.03        25.02         7.36         9.76 
TCGA-55-5899 TCGA-91-6836 
        2.86         0.36 

$`SLC35F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
        4.96         2.96         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             0.36              0.07 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
            25.02             85.32 
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
             9.86             14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE"   "SLC35F1 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "SLC35F1 MUTATED" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-91-6836 
  "SLC35F1 MUTATED" 
[1] "hr=" "1.6"
D129V2, continuous
D129V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      1    8
  SLC35F1 WILD-TYPE   92   71
        clus
vv       SLC35F1 MUTATED SLC35F1 WILD-TYPE
  FEMALE               1                92
  MALE                 8                71
D129V4, continuous
[1] "Remove cluster labels:" "SLC35F1 MUTATED"       
clus
  SLC35F1 MUTATED SLC35F1 WILD-TYPE 
                1                11 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" "SLC35F1 WILD-TYPE" 
D129V5, multiclass
D129V6, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  T1               2                39
  T2               6               102
  T3               0                14
  T4               1                 7
D129V7, multiclass
       clus
vv      SLC35F1 MUTATED SLC35F1 WILD-TYPE
  N0                  5                90
  N1                  4                33
  N2+N3               0                35
D129V8, multiclass
    clus
vv   SLC35F1 MUTATED SLC35F1 WILD-TYPE
  M0               8               129
  M1               0                 9
  MX               1                21
D129V9, multiclass
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  I                 6                82
  II                2                31
  III               1                38
  IV                0                 9
D129V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      0    9
  SLC35F1 WILD-TYPE   16  147
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  NO                0                16
  YES               9               147
D129V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC35F1 MUTATED      0    9
  SLC35F1 WILD-TYPE   28  135
     clus
vv    SLC35F1 MUTATED SLC35F1 WILD-TYPE
  NO                0                28
  YES               9               135

Clustering(130) Variable = FAM48B1 MUTATION ANALYSIS
D130V1, survival
                   sevent
clus2                0  1
  FAM48B1 MUTATED    6  3
  FAM48B1 WILD-TYPE 93 47
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                9               140 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                3                47 
$`FAM48B1 MUTATED`
TCGA-05-4427 TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 
       26.01         5.95        49.02        11.64        13.15         3.39 
TCGA-50-5931 TCGA-64-1678 TCGA-73-4666 
        8.78        39.09        20.28 

$`FAM48B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       19.10        17.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
             3.39              0.07 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            49.02             85.32 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            13.15             13.94 
[1] "3.4 - 49.0 (13.2)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6836 
"FAM48B1 WILD-TYPE" 
[1] "hr=" "1.1"
D130V2, continuous
D130V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      8    2
  FAM48B1 WILD-TYPE   85   77
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  FEMALE               8                85
  MALE                 2                77
D130V4, continuous
[1] "Remove cluster labels:" "FAM48B1 MUTATED"       
clus
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
D130V5, multiclass
D130V6, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  T1               3                38
  T2               7               101
  T3               0                14
  T4               0                 8
D130V7, multiclass
       clus
vv      FAM48B1 MUTATED FAM48B1 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               0                35
D130V8, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               0                22
D130V9, multiclass
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  I                 6                82
  II                3                30
  III               0                39
  IV                1                 8
D130V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      1    9
  FAM48B1 WILD-TYPE   15  147
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                1                15
  YES               9               147
D130V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      2    8
  FAM48B1 WILD-TYPE   26  136
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                2                26
  YES               8               136

Clustering(131) Variable = SERPINB13 MUTATION ANALYSIS
D131V1, survival
                     sevent
clus2                  0  1
  SERPINB13 MUTATED    8  0
  SERPINB13 WILD-TYPE 91 50
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  8                 141 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  0                  50 
$`SERPINB13 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-38-4626 TCGA-44-6774 TCGA-49-6743 TCGA-50-5072 
       47.05        14.93        85.32         5.42        12.13         8.05 
TCGA-67-3771 TCGA-73-4668 
        1.97        15.35 

$`SERPINB13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
               1.97                0.07 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              85.32               83.84 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              13.53               13.87 
[1] "2.0 - 85.3 (13.5)" "0.1 - 83.8 (13.9)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D131V2, continuous
D131V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      7    2
  SERPINB13 WILD-TYPE   86   77
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  FEMALE                 7                  86
  MALE                   2                  77
D131V4, continuous
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  2                  10 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-5778          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676 
"SERPINB13 WILD-TYPE" 
D131V5, multiclass
D131V6, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  T1                 3                  38
  T2                 5                 103
  T3                 0                  14
  T4                 1                   7
D131V7, multiclass
       clus
vv      SERPINB13 MUTATED SERPINB13 WILD-TYPE
  N0                    4                  91
  N1                    1                  36
  N2+N3                 4                  31
D131V8, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  M0                 8                 129
  M1                 0                   9
  MX                 1                  21
D131V9, multiclass
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  I                   3                  85
  II                  2                  31
  III                 4                  35
  IV                  0                   9
D131V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      1    8
  SERPINB13 WILD-TYPE   15  148
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  1                  15
  YES                 8                 148
D131V11, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      2    7
  SERPINB13 WILD-TYPE   26  137
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  2                  26
  YES                 7                 137

Clustering(132) Variable = OR6N2 MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2              0  1
  OR6N2 MUTATED    5  2
  OR6N2 WILD-TYPE 94 48
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              7             142 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              2              48 
$`OR6N2 MUTATED`
TCGA-05-5425 TCGA-35-4123 TCGA-49-4505 TCGA-49-6743 TCGA-50-6594 TCGA-64-5774 
        2.96         5.95        14.07        12.13        12.16        83.84 
TCGA-91-6831 
        1.28 

$`OR6N2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.15         0.36 

  OR6N2 MUTATED OR6N2 WILD-TYPE 
           1.28            0.07 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          83.84           85.32 
  OR6N2 MUTATED OR6N2 WILD-TYPE 
          12.13           14.47 
[1] "1.3 - 83.8 (12.1)" "0.1 - 85.3 (14.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
  "OR6N2 MUTATED" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE"   "OR6N2 MUTATED" "OR6N2 WILD-TYPE" 
     TCGA-91-6836 
"OR6N2 WILD-TYPE" 
[1] "hr=" "1.4"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      3    4
  OR6N2 WILD-TYPE   90   75
        clus
vv       OR6N2 MUTATED OR6N2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D132V4, continuous
[1] "Remove cluster labels:" "OR6N2 MUTATED"         
clus
  OR6N2 MUTATED OR6N2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" "OR6N2 WILD-TYPE" 
D132V5, multiclass
D132V6, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  T1             2              39
  T2             4             104
  T3             1              13
  T4             0               8
D132V7, multiclass
       clus
vv      OR6N2 MUTATED OR6N2 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             2              33
D132V8, multiclass
    clus
vv   OR6N2 MUTATED OR6N2 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             2              20
D132V9, multiclass
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  I               3              85
  II              2              31
  III             2              37
  IV              0               9
D132V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      0    7
  OR6N2 WILD-TYPE   16  149
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  NO              0              16
  YES             7             149
D132V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N2 MUTATED      1    6
  OR6N2 WILD-TYPE   27  138
     clus
vv    OR6N2 MUTATED OR6N2 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(133) Variable = ADAMTS18 MUTATION ANALYSIS
D133V1, survival
                    sevent
clus2                 0  1
  ADAMTS18 MUTATED   10  4
  ADAMTS18 WILD-TYPE 89 46
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                14                135 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 4                 46 
$`ADAMTS18 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-35-4123 
       19.92        37.02         9.96        26.01        25.02         5.95 
TCGA-38-4632 TCGA-44-6145 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-50-5049 
       44.61         3.35        29.75        43.20        15.02        48.82 
TCGA-55-6642 TCGA-91-6829 
       32.61        41.33 

$`ADAMTS18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       11.64         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        8.81        29.46        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
              3.35               0.07 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             48.82              85.32 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
             27.88              12.66 
[1] "3.4 - 48.8 (27.9)" "0.1 - 85.3 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED"   "ADAMTS18 MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
  "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"ADAMTS18 WILD-TYPE"   "ADAMTS18 MUTATED" "ADAMTS18 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
[1] "hr=" "1.7"
D133V2, continuous
D133V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      7   10
  ADAMTS18 WILD-TYPE   86   69
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  FEMALE                7                 86
  MALE                 10                 69
D133V4, continuous
[1] "Remove cluster labels:" "ADAMTS18 MUTATED"      
clus
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-5375         TCGA-64-1677 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"ADAMTS18 WILD-TYPE" "ADAMTS18 WILD-TYPE" 
D133V5, multiclass
D133V6, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  T1                4                 37
  T2               11                 97
  T3                0                 14
  T4                2                  6
D133V7, multiclass
       clus
vv      ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  N0                  10                 85
  N1                   5                 32
  N2+N3                2                 33
D133V8, multiclass
    clus
vv   ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  M0               12                125
  M1                1                  8
  MX                4                 18
D133V9, multiclass
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  I                 10                 78
  II                 3                 30
  III                3                 36
  IV                 1                  8
D133V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      1   16
  ADAMTS18 WILD-TYPE   15  140
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  NO                 1                 15
  YES               16                140
D133V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS18 MUTATED      2   15
  ADAMTS18 WILD-TYPE   26  129
     clus
vv    ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  NO                 2                 26
  YES               15                129

Clustering(134) Variable = CTNNA2 MUTATION ANALYSIS
D134V1, survival
                  sevent
clus2               0  1
  CTNNA2 MUTATED   12  5
  CTNNA2 WILD-TYPE 87 45
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
              17              132 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
               5               45 
$`CTNNA2 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-05-5715 
        3.98        37.02         9.96        26.01        25.02         2.04 
TCGA-44-2656 TCGA-44-5643 TCGA-44-6776 TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 
       19.10         3.48        63.72        12.13         4.93        71.47 
TCGA-50-5941 TCGA-50-6590 TCGA-55-1595 TCGA-91-6829 TCGA-91-6836 
        9.37        42.31        48.62        41.33         0.36 

$`CTNNA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        2.96         0.99         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
        8.32         6.44         6.21         4.60         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 
       29.46        29.75        43.20        15.02        12.99        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 

  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
            0.36             0.07 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           71.47            85.32 
  CTNNA2 MUTATED CTNNA2 WILD-TYPE 
           19.10            13.51 
[1] "0.4 - 71.5 (19.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "CTNNA2 MUTATED"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CTNNA2 WILD-TYPE"   "CTNNA2 MUTATED" "CTNNA2 WILD-TYPE" "CTNNA2 WILD-TYPE" 
      TCGA-91-6836 
  "CTNNA2 MUTATED" 
[1] "hr=" "1.6"
D134V2, continuous
D134V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED     11    9
  CTNNA2 WILD-TYPE   82   70
        clus
vv       CTNNA2 MUTATED CTNNA2 WILD-TYPE
  FEMALE             11               82
  MALE                9               70
D134V4, continuous
D134V5, multiclass
D134V6, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  T1              5               36
  T2             13               95
  T3              1               13
  T4              1                7
D134V7, multiclass
       clus
vv      CTNNA2 MUTATED CTNNA2 WILD-TYPE
  N0                10               85
  N1                 6               31
  N2+N3              4               31
D134V8, multiclass
    clus
vv   CTNNA2 MUTATED CTNNA2 WILD-TYPE
  M0             15              122
  M1              0                9
  MX              5               17
D134V9, multiclass
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  I               11               77
  II               3               30
  III              6               33
  IV               0                9
D134V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      2   18
  CTNNA2 WILD-TYPE   14  138
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  NO               2               14
  YES             18              138
D134V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNA2 MUTATED      3   17
  CTNNA2 WILD-TYPE   25  127
     clus
vv    CTNNA2 MUTATED CTNNA2 WILD-TYPE
  NO               3               25
  YES             17              127

Clustering(135) Variable = VN1R2 MUTATION ANALYSIS
D135V1, survival
                 sevent
clus2              0  1
  VN1R2 MUTATED    3  3
  VN1R2 WILD-TYPE 96 47
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              6             143 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
              3              47 
$`VN1R2 MUTATED`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4424 TCGA-44-6777 TCGA-50-5072 TCGA-50-6592 
       37.02         8.98        30.02        32.45         8.05        25.51 

$`VN1R2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       47.05         8.02        20.05         2.96        14.93        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  VN1R2 MUTATED VN1R2 WILD-TYPE 
           8.05            0.07 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
          37.02           85.32 
  VN1R2 MUTATED VN1R2 WILD-TYPE 
         27.765          13.150 
[1] "8.1 - 37.0 (27.8)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
  "VN1R2 MUTATED" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"VN1R2 WILD-TYPE"   "VN1R2 MUTATED" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE"   "VN1R2 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" "VN1R2 WILD-TYPE" 
     TCGA-91-6836 
"VN1R2 WILD-TYPE" 
[1] "hr=" "1.4"
D135V2, continuous
D135V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      3    4
  VN1R2 WILD-TYPE   90   75
        clus
vv       VN1R2 MUTATED VN1R2 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D135V4, continuous
D135V5, multiclass
D135V6, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  T1             0              41
  T2             5             103
  T3             2              12
  T4             0               8
D135V7, multiclass
       clus
vv      VN1R2 MUTATED VN1R2 WILD-TYPE
  N0                4              91
  N1                0              37
  N2+N3             2              33
D135V8, multiclass
    clus
vv   VN1R2 MUTATED VN1R2 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D135V9, multiclass
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D135V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      2    5
  VN1R2 WILD-TYPE   14  151
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  NO              2              14
  YES             5             151
D135V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R2 MUTATED      0    7
  VN1R2 WILD-TYPE   28  137
     clus
vv    VN1R2 MUTATED VN1R2 WILD-TYPE
  NO              0              28
  YES             7             137

Clustering(136) Variable = KRTAP11-1 MUTATION ANALYSIS
D136V1, survival
                     sevent
clus2                  0  1
  KRTAP11-1 MUTATED    4  1
  KRTAP11-1 WILD-TYPE 95 49
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  5                 144 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
                  1                  49 
$`KRTAP11-1 MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4405 TCGA-44-6776 TCGA-50-6593 
       38.07        47.05        20.05        63.72        11.05 

$`KRTAP11-1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              11.05                0.07 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              63.72               85.32 
  KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE 
              38.07               13.15 
[1] "11.1 - 63.7 (38.1)" "0.1 - 85.3 (13.2)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
  "KRTAP11-1 MUTATED" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE"   "KRTAP11-1 MUTATED" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP11-1 WILD-TYPE" "KRTAP11-1 WILD-TYPE" 
[1] "hr=" "3.4"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      5    1
  KRTAP11-1 WILD-TYPE   88   78
        clus
vv       KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  FEMALE                 5                  88
  MALE                   1                  78
D136V4, continuous
D136V5, multiclass
D136V6, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  T1                 2                  39
  T2                 2                 106
  T3                 1                  13
  T4                 1                   7
D136V7, multiclass
       clus
vv      KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  N0                    4                  91
  N1                    0                  37
  N2+N3                 2                  33
D136V8, multiclass
    clus
vv   KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  M0                 4                 133
  M1                 0                   9
  MX                 2                  20
D136V9, multiclass
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  I                   3                  85
  II                  1                  32
  III                 2                  37
  IV                  0                   9
D136V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      0    6
  KRTAP11-1 WILD-TYPE   16  150
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  NO                  0                  16
  YES                 6                 150
D136V11, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP11-1 MUTATED      0    6
  KRTAP11-1 WILD-TYPE   28  138
     clus
vv    KRTAP11-1 MUTATED KRTAP11-1 WILD-TYPE
  NO                  0                  28
  YES                 6                 138

Clustering(137) Variable = TMEM195 MUTATION ANALYSIS
D137V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    6  4
  TMEM195 WILD-TYPE 93 46
  TMEM195 MUTATED TMEM195 WILD-TYPE 
               10               139 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                4                46 
$`TMEM195 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-35-5375 TCGA-38-4626 TCGA-50-5935 TCGA-64-1676 
       19.92        24.03         8.68        85.32        21.47        56.81 
TCGA-64-5781 TCGA-67-3770 TCGA-73-4677 TCGA-91-6829 
       39.52         0.99         1.25        41.33 

$`TMEM195 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        47.61        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 
       83.84         0.10        30.44        16.67         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.46         1.32         4.01         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.99              0.07 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            85.32             83.84 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            22.75             13.15 
[1] "1.0 - 85.3 (22.8)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-91-6836 
"TMEM195 WILD-TYPE" 
[1] "hr=" "1.5"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      4    7
  TMEM195 WILD-TYPE   89   72
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               4                89
  MALE                 7                72
D137V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
D137V5, multiclass
D137V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               3                38
  T2               8               100
  T3               0                14
  T4               0                 8
D137V7, multiclass
       clus
vv      TMEM195 MUTATED TMEM195 WILD-TYPE
  N0                  9                86
  N1                  1                36
  N2+N3               1                34
D137V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D137V9, multiclass
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  I                 8                80
  II                2                31
  III               1                38
  IV                0                 9
D137V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      1   10
  TMEM195 WILD-TYPE   15  146
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                1                15
  YES              10               146
D137V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0   11
  TMEM195 WILD-TYPE   28  133
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                0                28
  YES              11               133

Clustering(138) Variable = OR14A16 MUTATION ANALYSIS
D138V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    8  3
  OR14A16 WILD-TYPE 91 47
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               11               138 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                3                47 
$`OR14A16 MUTATED`
TCGA-05-4384 TCGA-38-4632 TCGA-44-2656 TCGA-44-2665 TCGA-44-3918 TCGA-49-6744 
       14.01        44.61        19.10        13.15         6.44        12.99 
TCGA-50-5933 TCGA-50-6590 TCGA-64-5815 TCGA-67-3770 TCGA-91-6836 
       77.88        42.31         7.33         0.99         0.36 

$`OR14A16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       43.20        15.02        12.13         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        16.67        39.52         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.36              0.07 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            77.88             85.32 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            13.15             13.97 
[1] "0.4 - 77.9 (13.2)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-91-6836 
  "OR14A16 MUTATED" 
[1] "hr=" "1.6"
D138V2, continuous
D138V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      6    6
  OR14A16 WILD-TYPE   87   73
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               6                87
  MALE                 6                73
D138V4, continuous
D138V5, multiclass
D138V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
D138V7, multiclass
       clus
vv      OR14A16 MUTATED OR14A16 WILD-TYPE
  N0                  6                89
  N1                  4                33
  N2+N3               2                33
D138V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               9               128
  M1               1                 8
  MX               2                20
D138V9, multiclass
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  I                 6                82
  II                3                30
  III               2                37
  IV                1                 8
D138V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      1   11
  OR14A16 WILD-TYPE   15  145
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                1                15
  YES              11               145
D138V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      3    9
  OR14A16 WILD-TYPE   25  135
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                3                25
  YES               9               135

Clustering(139) Variable = CNGA2 MUTATION ANALYSIS
D139V1, survival
                 sevent
clus2              0  1
  CNGA2 MUTATED    6  3
  CNGA2 WILD-TYPE 93 47
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              9             140 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              3              47 
$`CNGA2 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-05-4427 TCGA-05-4430 TCGA-49-6742 TCGA-50-5045 
        9.96        29.95        26.01        25.02        15.02        71.47 
TCGA-55-1592 TCGA-64-1676 TCGA-67-3771 
       23.05        56.81         1.97 

$`CNGA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       30.02        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  CNGA2 MUTATED CNGA2 WILD-TYPE 
           1.97            0.07 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          71.47           85.32 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          25.02           13.07 
[1] "2.0 - 71.5 (25.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6836 
"CNGA2 WILD-TYPE" 
[1] "hr=" "1.6"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      4    7
  CNGA2 WILD-TYPE   89   72
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D139V4, continuous
D139V5, multiclass
D139V6, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  T1             3              38
  T2             7             101
  T3             0              14
  T4             1               7
D139V7, multiclass
       clus
vv      CNGA2 MUTATED CNGA2 WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             0              35
D139V8, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             1              21
D139V9, multiclass
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  I               7              81
  II              3              30
  III             1              38
  IV              0               9
D139V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   15  146
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              15
  YES            10             146
D139V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   27  134
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              27
  YES            10             134

Clustering(140) Variable = GPR158 MUTATION ANALYSIS
D140V1, survival
                  sevent
clus2               0  1
  GPR158 MUTATED    8  8
  GPR158 WILD-TYPE 91 42
  GPR158 MUTATED GPR158 WILD-TYPE 
              16              133 
  GPR158 MUTATED GPR158 WILD-TYPE 
               8               42 
$`GPR158 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4427 TCGA-05-4432 TCGA-05-5420 TCGA-38-4625 
       19.92        47.05        26.01        25.02         1.02        47.61 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-44-3918 TCGA-44-6777 
       49.02        28.37        11.64        44.61         6.44        32.45 
TCGA-50-5930 TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
        9.27        42.31        12.16         1.97 

$`GPR158 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       30.02        26.01        25.02        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
        8.68        85.32        37.71        35.28         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
        3.12         5.42         2.70        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GPR158 MUTATED GPR158 WILD-TYPE 
            1.02             0.07 
  GPR158 MUTATED GPR158 WILD-TYPE 
           49.02            85.32 
  GPR158 MUTATED GPR158 WILD-TYPE 
          25.515           13.150 
[1] "1.0 - 49.0 (25.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6836 
"GPR158 WILD-TYPE" 
[1] "hr=" "1.2"
D140V2, continuous
D140V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED     11    7
  GPR158 WILD-TYPE   82   72
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  FEMALE             11               82
  MALE                7               72
D140V4, continuous
D140V5, multiclass
D140V6, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  T1              2               39
  T2             12               96
  T3              3               11
  T4              1                7
D140V7, multiclass
       clus
vv      GPR158 MUTATED GPR158 WILD-TYPE
  N0                 9               86
  N1                 4               33
  N2+N3              4               31
D140V8, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  M0             15              122
  M1              1                8
  MX              2               20
D140V9, multiclass
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  I                8               80
  II               5               28
  III              4               35
  IV               1                8
D140V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      2   16
  GPR158 WILD-TYPE   14  140
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               2               14
  YES             16              140
D140V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      0   18
  GPR158 WILD-TYPE   28  126
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               0               28
  YES             18              126

Clustering(141) Variable = KCNS2 MUTATION ANALYSIS
D141V1, survival
                 sevent
clus2              0  1
  KCNS2 MUTATED    0  4
  KCNS2 WILD-TYPE 99 46
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4             145 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
              4              46 
$`KCNS2 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-49-4487 TCGA-50-5933 
        9.96        28.37        28.11        77.88 

$`KCNS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  KCNS2 MUTATED KCNS2 WILD-TYPE 
           9.96            0.07 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          77.88           85.32 
  KCNS2 MUTATED KCNS2 WILD-TYPE 
          28.24           13.15 
[1] "10.0 - 77.9 (28.2)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE"   "KCNS2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KCNS2 WILD-TYPE"   "KCNS2 MUTATED" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" "KCNS2 WILD-TYPE" 
     TCGA-91-6836 
"KCNS2 WILD-TYPE" 
[1] "hr=" "1.4"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      2    5
  KCNS2 WILD-TYPE   91   74
        clus
vv       KCNS2 MUTATED KCNS2 WILD-TYPE
  FEMALE             2              91
  MALE               5              74
D141V4, continuous
D141V5, multiclass
D141V6, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  T1             2              39
  T2             1             107
  T3             2              12
  T4             2               6
D141V7, multiclass
       clus
vv      KCNS2 MUTATED KCNS2 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             3              32
D141V8, multiclass
    clus
vv   KCNS2 MUTATED KCNS2 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D141V9, multiclass
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  I               2              86
  II              1              32
  III             3              36
  IV              1               8
D141V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      1    6
  KCNS2 WILD-TYPE   15  150
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  NO              1              15
  YES             6             150
D141V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNS2 MUTATED      0    7
  KCNS2 WILD-TYPE   28  137
     clus
vv    KCNS2 MUTATED KCNS2 WILD-TYPE
  NO              0              28
  YES             7             137

Clustering(142) Variable = PPP3CA MUTATION ANALYSIS
D142V1, survival
                  sevent
clus2               0  1
  PPP3CA MUTATED    2  0
  PPP3CA WILD-TYPE 97 50
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              147 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               0               50 
$`PPP3CA MUTATED`
TCGA-44-5643 TCGA-73-4676 
        3.48         4.01 

$`PPP3CA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       10.22         8.32         6.44         6.21         4.60         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         1.32         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  PPP3CA MUTATED PPP3CA WILD-TYPE 
            3.48             0.07 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
            4.01            85.32 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
           3.745           14.010 
[1] "3.5 - 4.0 (3.7)"   "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6836 
"PPP3CA WILD-TYPE" 
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6593 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-1592 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6642       TCGA-55-6712       TCGA-64-1676 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-64-5774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5815       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774       TCGA-67-6215       TCGA-67-6216 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4675       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D142V2, continuous
D142V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      0    3
  PPP3CA WILD-TYPE   93   76
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  FEMALE              0               93
  MALE                3               76
D142V4, continuous
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-75-5122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D142V5, multiclass
D142V6, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  T1              0               41
  T2              3              105
  T3              0               14
  T4              0                8
D142V7, multiclass
       clus
vv      PPP3CA MUTATED PPP3CA WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
D142V8, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
D142V9, multiclass
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  I                1               87
  II               1               32
  III              1               38
  IV               0                9
D142V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      2    1
  PPP3CA WILD-TYPE   14  155
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  NO               2               14
  YES              1              155
D142V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      2    1
  PPP3CA WILD-TYPE   26  143
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  NO               2               26
  YES              1              143

Clustering(143) Variable = ANKRD7 MUTATION ANALYSIS
D143V1, survival
                  sevent
clus2               0  1
  ANKRD7 MUTATED    3  3
  ANKRD7 WILD-TYPE 96 47
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               6              143 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
               3               47 
$`ANKRD7 MUTATED`
TCGA-05-4424 TCGA-44-3396 TCGA-50-6592 TCGA-73-4658 TCGA-73-4670 TCGA-91-6829 
       30.02        10.22        25.51        52.57         0.46        41.33 

$`ANKRD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
        3.39        15.78        13.15         3.19         8.09         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
            0.46             0.07 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
           52.57            85.32 
  ANKRD7 MUTATED ANKRD7 WILD-TYPE 
          27.765           13.150 
[1] "0.5 - 52.6 (27.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
  "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ANKRD7 WILD-TYPE"   "ANKRD7 MUTATED" "ANKRD7 WILD-TYPE" "ANKRD7 WILD-TYPE" 
      TCGA-91-6836 
"ANKRD7 WILD-TYPE" 
[1] "hr=" "1"  
D143V2, continuous
D143V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      4    2
  ANKRD7 WILD-TYPE   89   77
        clus
vv       ANKRD7 MUTATED ANKRD7 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D143V4, continuous
D143V5, multiclass
D143V6, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              1               13
  T4              0                8
D143V7, multiclass
       clus
vv      ANKRD7 MUTATED ANKRD7 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
D143V8, multiclass
    clus
vv   ANKRD7 MUTATED ANKRD7 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
D143V9, multiclass
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  I                3               85
  II               1               32
  III              1               38
  IV               1                8
D143V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      0    6
  ANKRD7 WILD-TYPE   16  150
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  NO               0               16
  YES              6              150
D143V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANKRD7 MUTATED      2    4
  ANKRD7 WILD-TYPE   26  140
     clus
vv    ANKRD7 MUTATED ANKRD7 WILD-TYPE
  NO               2               26
  YES              4              140

Clustering(144) Variable = C7ORF58 MUTATION ANALYSIS
D144V1, survival
                   sevent
clus2                0  1
  C7ORF58 MUTATED   12  4
  C7ORF58 WILD-TYPE 87 46
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
               16               133 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                4                46 
$`C7ORF58 MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4427 TCGA-05-5420 TCGA-38-4631 TCGA-44-2656 
       47.05        20.05        26.01         1.02        11.64        19.10 
TCGA-44-6774 TCGA-49-4507 TCGA-49-6743 TCGA-50-5933 TCGA-50-6593 TCGA-64-5778 
        5.42         8.81        12.13        77.88        11.05        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-73-4668 TCGA-91-6831 
       39.52         7.33        15.35         1.28 

$`C7ORF58 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
       32.84        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 
       37.02        83.84         0.10        16.67         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        1.32         4.01         1.25         1.22        41.33         1.15 
TCGA-91-6836 
        0.36 

  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
             1.02              0.07 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            77.88             85.32 
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
            13.74             13.87 
[1] "1.0 - 77.9 (13.7)" "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "C7ORF58 MUTATED"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE"   "C7ORF58 MUTATED" "C7ORF58 WILD-TYPE" 
       TCGA-91-6836 
"C7ORF58 WILD-TYPE" 
[1] "hr=" "1.5"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED     10    7
  C7ORF58 WILD-TYPE   83   72
        clus
vv       C7ORF58 MUTATED C7ORF58 WILD-TYPE
  FEMALE              10                83
  MALE                 7                72
D144V4, continuous
[1] "Remove cluster labels:" "C7ORF58 MUTATED"       
clus
  C7ORF58 MUTATED C7ORF58 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"C7ORF58 WILD-TYPE" "C7ORF58 WILD-TYPE" 
D144V5, multiclass
D144V6, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  T1               3                38
  T2              11                97
  T3               1                13
  T4               2                 6
D144V7, multiclass
       clus
vv      C7ORF58 MUTATED C7ORF58 WILD-TYPE
  N0                  7                88
  N1                  4                33
  N2+N3               6                29
D144V8, multiclass
    clus
vv   C7ORF58 MUTATED C7ORF58 WILD-TYPE
  M0              15               122
  M1               0                 9
  MX               2                20
D144V9, multiclass
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  I                 7                81
  II                3                30
  III               7                32
  IV                0                 9
D144V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED      2   15
  C7ORF58 WILD-TYPE   14  141
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  NO                2                14
  YES              15               141
D144V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C7ORF58 MUTATED      4   13
  C7ORF58 WILD-TYPE   24  131
     clus
vv    C7ORF58 MUTATED C7ORF58 WILD-TYPE
  NO                4                24
  YES              13               131

Clustering(145) Variable = FTSJD1 MUTATION ANALYSIS
D145V1, survival
                  sevent
clus2               0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 95 48
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              143 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               48 
$`FTSJD1 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4625 TCGA-44-3398 TCGA-44-4112 TCGA-73-4658 
        9.96        29.95        47.61         8.32         4.60        52.57 

$`FTSJD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19         8.09        10.22         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        0.89         0.69        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
            4.60             0.07 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
           52.57            85.32 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
          19.955           13.870 
[1] "4.6 - 52.6 (20.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6836 
"FTSJD1 WILD-TYPE" 
[1] "hr=" "1.5"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      4    2
  FTSJD1 WILD-TYPE   89   77
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D145V4, continuous
D145V5, multiclass
D145V6, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D145V7, multiclass
       clus
vv      FTSJD1 MUTATED FTSJD1 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              0               35
D145V8, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              0               22
D145V9, multiclass
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  I                5               83
  II               0               33
  III              1               38
  IV               0                9
D145V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      0    6
  FTSJD1 WILD-TYPE   16  150
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               0               16
  YES              6              150
D145V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      1    5
  FTSJD1 WILD-TYPE   27  139
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               1               27
  YES              5              139

Clustering(146) Variable = MTTP MUTATION ANALYSIS
D146V1, survival
                sevent
clus2             0  1
  MTTP MUTATED    2  2
  MTTP WILD-TYPE 97 48
  MTTP MUTATED MTTP WILD-TYPE 
             4            145 
  MTTP MUTATED MTTP WILD-TYPE 
             2             48 
$`MTTP MUTATED`
TCGA-05-4396 TCGA-49-4487 TCGA-50-5049 TCGA-64-1680 
        9.96        28.11        48.82        37.02 

$`MTTP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  MTTP MUTATED MTTP WILD-TYPE 
          9.96           0.07 
  MTTP MUTATED MTTP WILD-TYPE 
         48.82          85.32 
  MTTP MUTATED MTTP WILD-TYPE 
        32.565         13.150 
[1] "10.0 - 48.8 (32.6)" "0.1 - 85.3 (13.2)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6836 
"MTTP WILD-TYPE" 
[1] "hr=" "1"  
D146V2, continuous
D146V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      1    4
  MTTP WILD-TYPE   92   75
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  FEMALE            1             92
  MALE              4             75
D146V4, continuous
D146V5, multiclass
D146V6, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  T1            1             40
  T2            3            105
  T3            0             14
  T4            1              7
D146V7, multiclass
       clus
vv      MTTP MUTATED MTTP WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            1             34
D146V8, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  M0            4            133
  M1            1              8
  MX            0             22
D146V9, multiclass
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  I              3             85
  II             0             33
  III            1             38
  IV             1              8
D146V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    3
  MTTP WILD-TYPE   14  153
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  NO             2             14
  YES            3            153
D146V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      1    4
  MTTP WILD-TYPE   27  140
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  NO             1             27
  YES            4            140

Clustering(147) Variable = PRIM2 MUTATION ANALYSIS
D147V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    6  4
  PRIM2 WILD-TYPE 93 46
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             10             139 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              4              46 
$`PRIM2 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4415 TCGA-05-4420 TCGA-05-4427 TCGA-44-6144 
       19.92        24.03         2.96        29.95        26.01         0.30 
TCGA-50-5072 TCGA-50-6593 TCGA-55-1596 TCGA-64-5775 
        8.05        11.05        45.17         0.10 

$`PRIM2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02        20.05        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        3.48         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       48.82        14.96        25.81         9.76        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.10            0.07 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          45.17           85.32 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
         15.485          13.870 
[1] "0.1 - 45.2 (15.5)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-91-6836 
"PRIM2 WILD-TYPE" 
[1] "hr=" "1.6"
D147V2, continuous
D147V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      2    8
  PRIM2 WILD-TYPE   91   71
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             2              91
  MALE               8              71
D147V4, continuous
D147V5, multiclass
D147V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             2              39
  T2             6             102
  T3             0              14
  T4             2               6
D147V7, multiclass
       clus
vv      PRIM2 MUTATED PRIM2 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             3              32
D147V8, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             0              22
D147V9, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  I               3              85
  II              3              30
  III             4              35
  IV              0               9
D147V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      1    9
  PRIM2 WILD-TYPE   15  147
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              1              15
  YES             9             147
D147V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      0   10
  PRIM2 WILD-TYPE   28  134
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              0              28
  YES            10             134

Clustering(148) Variable = C1ORF129 MUTATION ANALYSIS
D148V1, survival
                    sevent
clus2                 0  1
  C1ORF129 MUTATED    4  4
  C1ORF129 WILD-TYPE 95 46
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
                 8                141 
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
                 4                 46 
$`C1ORF129 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-44-6777 TCGA-49-6742 TCGA-49-6744 TCGA-50-6590 
        9.96        47.05        32.45        15.02        12.99        42.31 
TCGA-71-6725 TCGA-73-4658 
        2.01        52.57 

$`C1ORF129 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.46        29.75        43.20        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        0.69        13.87        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
              2.01               0.07 
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
             52.57              85.32 
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
            23.735             13.150 
[1] "2.0 - 52.6 (23.7)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE"   "C1ORF129 MUTATED" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
  "C1ORF129 MUTATED" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
[1] "hr=" "1"  
D148V2, continuous
D148V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF129 MUTATED      6    2
  C1ORF129 WILD-TYPE   87   77
        clus
vv       C1ORF129 MUTATED C1ORF129 WILD-TYPE
  FEMALE                6                 87
  MALE                  2                 77
D148V4, continuous
[1] "Remove cluster labels:" "C1ORF129 MUTATED"      
clus
  C1ORF129 MUTATED C1ORF129 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-73-4659 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"C1ORF129 WILD-TYPE" "C1ORF129 WILD-TYPE" 
D148V5, multiclass
D148V6, multiclass
    clus
vv   C1ORF129 MUTATED C1ORF129 WILD-TYPE
  T1                1                 40
  T2                5                103
  T3                0                 14
  T4                2                  6
D148V7, multiclass
       clus
vv      C1ORF129 MUTATED C1ORF129 WILD-TYPE
  N0                   3                 92
  N1                   3                 34
  N2+N3                1                 34
D148V8, multiclass
    clus
vv   C1ORF129 MUTATED C1ORF129 WILD-TYPE
  M0                5                132
  M1                0                  9
  MX                3                 19
D148V9, multiclass
     clus
vv    C1ORF129 MUTATED C1ORF129 WILD-TYPE
  I                  4                 84
  II                 2                 31
  III                2                 37
  IV                 0                  9
D148V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF129 MUTATED      1    7
  C1ORF129 WILD-TYPE   15  149
     clus
vv    C1ORF129 MUTATED C1ORF129 WILD-TYPE
  NO                 1                 15
  YES                7                149
D148V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF129 MUTATED      2    6
  C1ORF129 WILD-TYPE   26  138
     clus
vv    C1ORF129 MUTATED C1ORF129 WILD-TYPE
  NO                 2                 26
  YES                6                138

Clustering(149) Variable = OR13G1 MUTATION ANALYSIS
D149V1, survival
                  sevent
clus2               0  1
  OR13G1 MUTATED    7  2
  OR13G1 WILD-TYPE 92 48
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              140 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               2               48 
$`OR13G1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-38-4625 TCGA-49-4514 TCGA-64-5778 TCGA-64-5781 
       19.92        26.01        47.61        43.20        30.44        39.52 
TCGA-67-3771 TCGA-73-4677 TCGA-91-6829 
        1.97         1.25        41.33 

$`OR13G1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       39.09        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6831 
       15.35         0.46         1.32         4.01         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  OR13G1 MUTATED OR13G1 WILD-TYPE 
            1.25             0.07 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           47.61            85.32 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           30.44            13.07 
[1] "1.2 - 47.6 (30.4)" "0.1 - 85.3 (13.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-91-6836 
"OR13G1 WILD-TYPE" 
[1] "hr=" "2.3"
D149V2, continuous
D149V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      5    4
  OR13G1 WILD-TYPE   88   75
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D149V4, continuous
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D149V5, multiclass
D149V6, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  T1              2               39
  T2              7              101
  T3              0               14
  T4              0                8
D149V7, multiclass
       clus
vv      OR13G1 MUTATED OR13G1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              0               35
D149V8, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              1               21
D149V9, multiclass
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  I                8               80
  II               1               32
  III              0               39
  IV               0                9
D149V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   16  147
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               16
  YES              9              147
D149V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   28  135
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               28
  YES              9              135

Clustering(150) Variable = C14ORF177 MUTATION ANALYSIS
D150V1, survival
                     sevent
clus2                  0  1
  C14ORF177 MUTATED    4  1
  C14ORF177 WILD-TYPE 95 49
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  5                 144 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
                  1                  49 
$`C14ORF177 MUTATED`
TCGA-05-4382 TCGA-05-4432 TCGA-44-2665 TCGA-50-6590 TCGA-64-1678 
       19.92        25.02        13.15        42.31        39.09 

$`C14ORF177 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              13.15                0.07 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              42.31               85.32 
  C14ORF177 MUTATED C14ORF177 WILD-TYPE 
              25.02               13.07 
[1] "13.2 - 42.3 (25.0)" "0.1 - 85.3 (13.1)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4397          TCGA-05-4398          TCGA-05-4402 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4418          TCGA-05-4420          TCGA-05-4424 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4426          TCGA-05-4427          TCGA-05-4430 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-4432          TCGA-05-4433          TCGA-05-4434 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5420          TCGA-05-5423          TCGA-05-5425 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-05-5429          TCGA-05-5715          TCGA-35-3615 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4625          TCGA-38-4626          TCGA-38-4627 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4628          TCGA-38-4629          TCGA-38-4630 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-38-4631          TCGA-38-4632          TCGA-38-6178 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
  "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3396          TCGA-44-3398          TCGA-44-3918 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-44-5643 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4486          TCGA-49-4487          TCGA-49-4488 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4490          TCGA-49-4494          TCGA-49-4501 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4505          TCGA-49-4506          TCGA-49-4507 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-4510          TCGA-49-4512          TCGA-49-4514 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6742          TCGA-49-6743          TCGA-49-6744 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-49-6745          TCGA-50-5044          TCGA-50-5045 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-1596          TCGA-55-5899          TCGA-55-6543 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-55-6642          TCGA-55-6712          TCGA-64-1676 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"C14ORF177 WILD-TYPE"   "C14ORF177 MUTATED" "C14ORF177 WILD-TYPE" 
         TCGA-64-5774          TCGA-64-5775          TCGA-64-5778 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3771          TCGA-67-3772 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-3773          TCGA-67-3774          TCGA-67-6215 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-67-6216          TCGA-67-6217          TCGA-71-6725 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4658          TCGA-73-4659          TCGA-73-4662 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4666          TCGA-73-4668          TCGA-73-4670 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-73-4675          TCGA-73-4676          TCGA-73-4677 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C14ORF177 WILD-TYPE" "C14ORF177 WILD-TYPE" 
[1] "hr=" "2.3"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      3    2
  C14ORF177 WILD-TYPE   90   77
        clus
vv       C14ORF177 MUTATED C14ORF177 WILD-TYPE
  FEMALE                 3                  90
  MALE                   2                  77
D150V4, continuous
D150V5, multiclass
D150V6, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  T1                 0                  41
  T2                 5                 103
  T3                 0                  14
  T4                 0                   8
D150V7, multiclass
       clus
vv      C14ORF177 MUTATED C14ORF177 WILD-TYPE
  N0                    3                  92
  N1                    2                  35
  N2+N3                 0                  35
D150V8, multiclass
    clus
vv   C14ORF177 MUTATED C14ORF177 WILD-TYPE
  M0                 5                 132
  M1                 0                   9
  MX                 0                  22
D150V9, multiclass
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  I                   2                  86
  II                  3                  30
  III                 0                  39
  IV                  0                   9
D150V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      0    5
  C14ORF177 WILD-TYPE   16  151
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  NO                  0                  16
  YES                 5                 151
D150V11, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C14ORF177 MUTATED      2    3
  C14ORF177 WILD-TYPE   26  141
     clus
vv    C14ORF177 MUTATED C14ORF177 WILD-TYPE
  NO                  2                  26
  YES                 3                 141

Clustering(151) Variable = PSG6 MUTATION ANALYSIS
D151V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    7  3
  PSG6 WILD-TYPE 92 47
  PSG6 MUTATED PSG6 WILD-TYPE 
            10            139 
  PSG6 MUTATED PSG6 WILD-TYPE 
             3             47 
$`PSG6 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-38-4625 TCGA-38-4626 TCGA-38-4632 
        9.96        30.02        26.01        47.61        85.32        44.61 
TCGA-49-4514 TCGA-50-5049 TCGA-50-5066 TCGA-73-4677 
       43.20        48.82         9.76         1.25 

$`PSG6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95         8.68        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       14.07        32.84         8.81        29.46        29.75        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PSG6 MUTATED PSG6 WILD-TYPE 
          1.25           0.07 
  PSG6 MUTATED PSG6 WILD-TYPE 
         85.32          83.84 
  PSG6 MUTATED PSG6 WILD-TYPE 
         36.61          13.15 
[1] "1.2 - 85.3 (36.6)" "0.1 - 83.8 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED"   "PSG6 MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-91-6836 
"PSG6 WILD-TYPE" 
[1] "hr=" "2.4"
D151V2, continuous
D151V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      4    7
  PSG6 WILD-TYPE   89   72
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            4             89
  MALE              7             72
D151V4, continuous
D151V5, multiclass
D151V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             40
  T2            7            101
  T3            2             12
  T4            1              7
D151V7, multiclass
       clus
vv      PSG6 MUTATED PSG6 WILD-TYPE
  N0               8             87
  N1               3             34
  N2+N3            0             35
D151V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0           10            127
  M1            1              8
  MX            0             22
D151V9, multiclass
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  I              6             82
  II             3             30
  III            1             38
  IV             1              8
D151V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      1   10
  PSG6 WILD-TYPE   15  146
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             1             15
  YES           10            146
D151V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0   11
  PSG6 WILD-TYPE   28  133
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             0             28
  YES           11            133

Clustering(152) Variable = OR10G8 MUTATION ANALYSIS
D152V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    4  2
  OR10G8 WILD-TYPE 95 48
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               6              143 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               2               48 
$`OR10G8 MUTATED`
TCGA-05-4382 TCGA-35-4122 TCGA-44-6144 TCGA-50-5933 TCGA-50-6592 TCGA-64-1676 
       19.92         7.36         0.30        77.88        25.51        56.81 

$`OR10G8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
        6.44         6.21         4.60         3.48         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.30             0.07 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
           77.88            85.32 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          22.715           13.150 
[1] "0.3 - 77.9 (22.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-91-6836 
"OR10G8 WILD-TYPE" 
[1] "hr=" "2.1"
D152V2, continuous
D152V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      2    6
  OR10G8 WILD-TYPE   91   73
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              2               91
  MALE                6               73
D152V4, continuous
[1] "Remove cluster labels:" "OR10G8 MUTATED"        
clus
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
D152V5, multiclass
D152V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               38
  T2              3              105
  T3              1               13
  T4              1                7
D152V7, multiclass
       clus
vv      OR10G8 MUTATED OR10G8 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              2               33
D152V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
D152V9, multiclass
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  I                6               82
  II               0               33
  III              2               37
  IV               0                9
D152V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      1    7
  OR10G8 WILD-TYPE   15  149
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               1               15
  YES              7              149
D152V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      0    8
  OR10G8 WILD-TYPE   28  136
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               0               28
  YES              8              136

Clustering(153) Variable = ANKRD56 MUTATION ANALYSIS
D153V1, survival
                   sevent
clus2                0  1
  ANKRD56 MUTATED    8  2
  ANKRD56 WILD-TYPE 91 48
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               10               139 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                2                48 
$`ANKRD56 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-5420 TCGA-05-5423 TCGA-38-4631 
       19.92         9.96        47.05         1.02         4.96        11.64 
TCGA-55-1595 TCGA-55-6642 TCGA-64-5779 TCGA-64-5781 
       48.62        32.61        16.67        39.52 

$`ANKRD56 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       23.05        38.73        45.17         2.86         0.07         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
             1.02              0.07 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
            48.62             85.32 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
           18.295            13.150 
[1] "1.0 - 48.6 (18.3)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6836 
"ANKRD56 WILD-TYPE" 
[1] "hr=" "2"  
D153V2, continuous
D153V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      5    6
  ANKRD56 WILD-TYPE   88   73
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  FEMALE               5                88
  MALE                 6                73
D153V4, continuous
D153V5, multiclass
D153V6, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  T1               1                40
  T2               7               101
  T3               1                13
  T4               2                 6
D153V7, multiclass
       clus
vv      ANKRD56 MUTATED ANKRD56 WILD-TYPE
  N0                  5                90
  N1                  2                35
  N2+N3               4                31
D153V8, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  M0              10               127
  M1               0                 9
  MX               1                21
D153V9, multiclass
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  I                 5                83
  II                1                32
  III               5                34
  IV                0                 9
D153V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      0   11
  ANKRD56 WILD-TYPE   16  145
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  NO                0                16
  YES              11               145
D153V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      1   10
  ANKRD56 WILD-TYPE   27  134
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  NO                1                27
  YES              10               134

Clustering(154) Variable = NTRK1 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  NTRK1 MUTATED    4  3
  NTRK1 WILD-TYPE 95 47
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             142 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              3              47 
$`NTRK1 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-49-4494 TCGA-49-6743 TCGA-67-3770 
        9.96        47.05        30.02        35.54        12.13         0.99 
TCGA-73-4659 
       23.38 

$`NTRK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 
        0.69        13.87         2.01        52.57        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  NTRK1 MUTATED NTRK1 WILD-TYPE 
           0.99            0.07 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
          47.05           85.32 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
          23.38           13.51 
[1] "1.0 - 47.0 (23.4)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6836 
"NTRK1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6836 
"NTRK1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6836 
"NTRK1 WILD-TYPE" 
[1] "hr=" "1.1"
D154V2, continuous
D154V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTRK1 MUTATED      3    4
  NTRK1 WILD-TYPE   90   75
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D154V4, continuous
[1] "Remove cluster labels:" "NTRK1 MUTATED"         
clus
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
D154V5, multiclass
D154V6, multiclass
    clus
vv   NTRK1 MUTATED NTRK1 WILD-TYPE
  T1             2              39
  T2             1             107
  T3             2              12
  T4             2               6
D154V7, multiclass
       clus
vv      NTRK1 MUTATED NTRK1 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             4              31
D154V8, multiclass
    clus
vv   NTRK1 MUTATED NTRK1 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D154V9, multiclass
     clus
vv    NTRK1 MUTATED NTRK1 WILD-TYPE
  I               1              87
  II              1              32
  III             5              34
  IV              0               9
D154V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTRK1 MUTATED      0    7
  NTRK1 WILD-TYPE   16  149
     clus
vv    NTRK1 MUTATED NTRK1 WILD-TYPE
  NO              0              16
  YES             7             149
D154V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTRK1 MUTATED      1    6
  NTRK1 WILD-TYPE   27  138
     clus
vv    NTRK1 MUTATED NTRK1 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(155) Variable = IRX1 MUTATION ANALYSIS
D155V1, survival
                sevent
clus2             0  1
  IRX1 MUTATED    3  2
  IRX1 WILD-TYPE 96 48
  IRX1 MUTATED IRX1 WILD-TYPE 
             5            144 
  IRX1 MUTATED IRX1 WILD-TYPE 
             2             48 
$`IRX1 MUTATED`
TCGA-44-6777 TCGA-55-1592 TCGA-55-1596 TCGA-67-6217 TCGA-91-6831 
       32.45        23.05        45.17        13.87         1.28 

$`IRX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.15         0.36 

  IRX1 MUTATED IRX1 WILD-TYPE 
          1.28           0.07 
  IRX1 MUTATED IRX1 WILD-TYPE 
         45.17          85.32 
  IRX1 MUTATED IRX1 WILD-TYPE 
         23.05          13.15 
[1] "1.3 - 45.2 (23.1)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" "IRX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"IRX1 WILD-TYPE" "IRX1 WILD-TYPE"   "IRX1 MUTATED" "IRX1 WILD-TYPE" 
    TCGA-91-6836 
"IRX1 WILD-TYPE" 
[1] "hr=" "1.1"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      2    5
  IRX1 WILD-TYPE   91   74
        clus
vv       IRX1 MUTATED IRX1 WILD-TYPE
  FEMALE            2             91
  MALE              5             74
D155V4, continuous
D155V5, multiclass
D155V6, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  T1            1             40
  T2            6            102
  T3            0             14
  T4            0              8
D155V7, multiclass
       clus
vv      IRX1 MUTATED IRX1 WILD-TYPE
  N0               3             92
  N1               3             34
  N2+N3            0             35
D155V8, multiclass
    clus
vv   IRX1 MUTATED IRX1 WILD-TYPE
  M0            5            132
  M1            0              9
  MX            2             20
D155V9, multiclass
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  I              4             84
  II             3             30
  III            0             39
  IV             0              9
D155V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      1    6
  IRX1 WILD-TYPE   15  150
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  NO             1             15
  YES            6            150
D155V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IRX1 MUTATED      0    7
  IRX1 WILD-TYPE   28  137
     clus
vv    IRX1 MUTATED IRX1 WILD-TYPE
  NO             0             28
  YES            7            137

Clustering(156) Variable = APCS MUTATION ANALYSIS
D156V1, survival
                sevent
clus2             0  1
  APCS MUTATED    4  0
  APCS WILD-TYPE 95 50
  APCS MUTATED APCS WILD-TYPE 
             4            145 
  APCS MUTATED APCS WILD-TYPE 
             0             50 
$`APCS MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-44-3918 TCGA-44-6778 
       37.02        14.93         6.44        36.49 

$`APCS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  APCS MUTATED APCS WILD-TYPE 
          6.44           0.07 
  APCS MUTATED APCS WILD-TYPE 
         37.02          85.32 
  APCS MUTATED APCS WILD-TYPE 
         25.71          13.15 
[1] "6.4 - 37.0 (25.7)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"APCS WILD-TYPE" "APCS WILD-TYPE"   "APCS MUTATED" "APCS WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
  "APCS MUTATED" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" "APCS WILD-TYPE" 
    TCGA-91-6836 
"APCS WILD-TYPE" 
[1] "hr="     "2.6e+07"
D156V2, continuous
D156V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  APCS MUTATED      3    1
  APCS WILD-TYPE   90   78
        clus
vv       APCS MUTATED APCS WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D156V4, continuous
D156V5, multiclass
D156V6, multiclass
    clus
vv   APCS MUTATED APCS WILD-TYPE
  T1            2             39
  T2            2            106
  T3            0             14
  T4            0              8
D156V7, multiclass
       clus
vv      APCS MUTATED APCS WILD-TYPE
  N0               4             91
  N1               0             37
  N2+N3            0             35
D156V8, multiclass
    clus
vv   APCS MUTATED APCS WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
D156V9, multiclass
     clus
vv    APCS MUTATED APCS WILD-TYPE
  I              4             84
  II             0             33
  III            0             39
  IV             0              9
D156V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  APCS MUTATED      0    4
  APCS WILD-TYPE   16  152
     clus
vv    APCS MUTATED APCS WILD-TYPE
  NO             0             16
  YES            4            152
D156V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  APCS MUTATED      0    4
  APCS WILD-TYPE   28  140
     clus
vv    APCS MUTATED APCS WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(157) Variable = BCHE MUTATION ANALYSIS
D157V1, survival
                sevent
clus2             0  1
  BCHE MUTATED    5  2
  BCHE WILD-TYPE 94 48
  BCHE MUTATED BCHE WILD-TYPE 
             7            142 
  BCHE MUTATED BCHE WILD-TYPE 
             2             48 
$`BCHE MUTATED`
TCGA-44-2662 TCGA-44-2668 TCGA-44-3398 TCGA-50-5931 TCGA-50-6590 TCGA-64-5781 
       15.78         8.09         8.32         8.78        42.31        39.52 
TCGA-64-5815 
        7.33 

$`BCHE WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3918 
       17.39         3.39        13.15         3.19        10.22         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-67-3770 
       37.02        83.84         0.10        30.44        16.67         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  BCHE MUTATED BCHE WILD-TYPE 
          7.33           0.07 
  BCHE MUTATED BCHE WILD-TYPE 
         42.31          85.32 
  BCHE MUTATED BCHE WILD-TYPE 
          8.78          13.94 
[1] "7.3 - 42.3 (8.8)"  "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "BCHE MUTATED"   "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-91-6836 
"BCHE WILD-TYPE" 
[1] "hr=" "1"  
D157V2, continuous
D157V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      4    5
  BCHE WILD-TYPE   89   74
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            4             89
  MALE              5             74
D157V4, continuous
D157V5, multiclass
D157V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            1             40
  T2            7            101
  T3            1             13
  T4            0              8
D157V7, multiclass
       clus
vv      BCHE MUTATED BCHE WILD-TYPE
  N0               7             88
  N1               1             36
  N2+N3            1             34
D157V8, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  M0            8            129
  M1            1              8
  MX            0             22
D157V9, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              7             81
  II             1             32
  III            0             39
  IV             1              8
D157V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      0    9
  BCHE WILD-TYPE   16  147
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             0             16
  YES            9            147
D157V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      2    7
  BCHE WILD-TYPE   26  137
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  NO             2             26
  YES            7            137

Clustering(158) Variable = CCDC73 MUTATION ANALYSIS
D158V1, survival
                  sevent
clus2               0  1
  CCDC73 MUTATED    7  3
  CCDC73 WILD-TYPE 92 47
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              10              139 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               3               47 
$`CCDC73 MUTATED`
TCGA-05-5423 TCGA-38-4625 TCGA-44-6147 TCGA-49-4488 TCGA-50-5049 TCGA-50-5051 
        4.96        47.61         7.76        28.57        48.82        14.96 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-91-6829 
       12.16        48.62         2.86        41.33 

$`CCDC73 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        71.47        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       38.73        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25         1.22         1.28         1.15 
TCGA-91-6836 
        0.36 

  CCDC73 MUTATED CCDC73 WILD-TYPE 
            2.86             0.07 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
           48.82            85.32 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
          21.765           13.150 
[1] "2.9 - 48.8 (21.8)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-91-6836 
"CCDC73 WILD-TYPE" 
[1] "hr=" "1.5"
D158V2, continuous
D158V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      7    4
  CCDC73 WILD-TYPE   86   75
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D158V4, continuous
D158V5, multiclass
D158V6, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              2               12
  T4              0                8
D158V7, multiclass
       clus
vv      CCDC73 MUTATED CCDC73 WILD-TYPE
  N0                 5               90
  N1                 2               35
  N2+N3              3               32
D158V8, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  M0              9              128
  M1              0                9
  MX              2               20
D158V9, multiclass
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  I                7               81
  II               1               32
  III              3               36
  IV               0                9
D158V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      2    9
  CCDC73 WILD-TYPE   14  147
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               2               14
  YES              9              147
D158V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      0   11
  CCDC73 WILD-TYPE   28  133
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               0               28
  YES             11              133

Clustering(159) Variable = DOCK3 MUTATION ANALYSIS
D159V1, survival
                 sevent
clus2              0  1
  DOCK3 MUTATED    4  1
  DOCK3 WILD-TYPE 95 49
  DOCK3 MUTATED DOCK3 WILD-TYPE 
              5             144 
  DOCK3 MUTATED DOCK3 WILD-TYPE 
              1              49 
$`DOCK3 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-67-3771 TCGA-73-4666 TCGA-73-4668 
       38.07         9.96         1.97        20.28        15.35 

$`DOCK3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       52.57        23.38        29.95         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  DOCK3 MUTATED DOCK3 WILD-TYPE 
           1.97            0.07 
  DOCK3 MUTATED DOCK3 WILD-TYPE 
          38.07           85.32 
  DOCK3 MUTATED DOCK3 WILD-TYPE 
          15.35           13.51 
[1] "2.0 - 38.1 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DOCK3 WILD-TYPE"   "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED"   "DOCK3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6836 
"DOCK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DOCK3 WILD-TYPE"   "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED"   "DOCK3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6836 
"DOCK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DOCK3 WILD-TYPE"   "DOCK3 MUTATED" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE"   "DOCK3 MUTATED"   "DOCK3 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-91-6836 
"DOCK3 WILD-TYPE" 
[1] "hr=" "1.3"
D159V2, continuous
D159V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK3 MUTATED      3    2
  DOCK3 WILD-TYPE   90   77
        clus
vv       DOCK3 MUTATED DOCK3 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D159V4, continuous
[1] "Remove cluster labels:" "DOCK3 MUTATED"         
clus
  DOCK3 MUTATED DOCK3 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"DOCK3 WILD-TYPE" "DOCK3 WILD-TYPE" 
D159V5, multiclass
D159V6, multiclass
    clus
vv   DOCK3 MUTATED DOCK3 WILD-TYPE
  T1             2              39
  T2             2             106
  T3             0              14
  T4             1               7
D159V7, multiclass
       clus
vv      DOCK3 MUTATED DOCK3 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             0              35
D159V8, multiclass
    clus
vv   DOCK3 MUTATED DOCK3 WILD-TYPE
  M0             4             133
  M1             1               8
  MX             0              22
D159V9, multiclass
     clus
vv    DOCK3 MUTATED DOCK3 WILD-TYPE
  I               2              86
  II              1              32
  III             1              38
  IV              1               8
D159V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK3 MUTATED      1    4
  DOCK3 WILD-TYPE   15  152
     clus
vv    DOCK3 MUTATED DOCK3 WILD-TYPE
  NO              1              15
  YES             4             152
D159V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK3 MUTATED      2    3
  DOCK3 WILD-TYPE   26  141
     clus
vv    DOCK3 MUTATED DOCK3 WILD-TYPE
  NO              2              26
  YES             3             141

Clustering(160) Variable = GABRA5 MUTATION ANALYSIS
D160V1, survival
                  sevent
clus2               0  1
  GABRA5 MUTATED    7  3
  GABRA5 WILD-TYPE 92 47
  GABRA5 MUTATED GABRA5 WILD-TYPE 
              10              139 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               3               47 
$`GABRA5 MUTATED`
TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 TCGA-38-4632 TCGA-44-4112 TCGA-49-4494 
       26.01         2.04         7.36        44.61         4.60        35.54 
TCGA-50-5049 TCGA-50-5931 TCGA-55-6642 TCGA-67-3770 
       48.82         8.78        32.61         0.99 

$`GABRA5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.07 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           48.82            85.32 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
          17.395           13.870 
[1] "1.0 - 48.8 (17.4)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-91-6836 
"GABRA5 WILD-TYPE" 
[1] "hr=" "1.2"
D160V2, continuous
D160V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    6
  GABRA5 WILD-TYPE   88   73
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5               88
  MALE                6               73
D160V4, continuous
[1] "Remove cluster labels:" "GABRA5 MUTATED"        
clus
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
D160V5, multiclass
D160V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              2               39
  T2              8              100
  T3              1               13
  T4              0                8
D160V7, multiclass
       clus
vv      GABRA5 MUTATED GABRA5 WILD-TYPE
  N0                 8               87
  N1                 2               35
  N2+N3              1               34
D160V8, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  M0              9              128
  M1              1                8
  MX              1               21
D160V9, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                8               80
  II               1               32
  III              1               38
  IV               1                8
D160V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      1   10
  GABRA5 WILD-TYPE   15  146
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  NO               1               15
  YES             10              146
D160V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      1   10
  GABRA5 WILD-TYPE   27  134
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  NO               1               27
  YES             10              134

Clustering(161) Variable = LCE1F MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2              0  1
  LCE1F MUTATED    1  2
  LCE1F WILD-TYPE 98 48
  LCE1F MUTATED LCE1F WILD-TYPE 
              3             146 
  LCE1F MUTATED LCE1F WILD-TYPE 
              2              48 
$`LCE1F MUTATED`
TCGA-38-4626 TCGA-49-4506 TCGA-50-6593 
       85.32        32.84        11.05 

$`LCE1F WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  LCE1F MUTATED LCE1F WILD-TYPE 
          11.05            0.07 
  LCE1F MUTATED LCE1F WILD-TYPE 
          85.32           83.84 
  LCE1F MUTATED LCE1F WILD-TYPE 
          32.84           13.51 
[1] "11.1 - 85.3 (32.8)" "0.1 - 83.8 (13.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE"   "LCE1F MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LCE1F WILD-TYPE"   "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
  "LCE1F MUTATED" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" "LCE1F WILD-TYPE" 
     TCGA-91-6836 
"LCE1F WILD-TYPE" 
[1] "hr=" "1.4"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1F MUTATED      4    0
  LCE1F WILD-TYPE   89   79
        clus
vv       LCE1F MUTATED LCE1F WILD-TYPE
  FEMALE             4              89
  MALE               0              79
D161V4, continuous
D161V5, multiclass
D161V6, multiclass
    clus
vv   LCE1F MUTATED LCE1F WILD-TYPE
  T1             1              40
  T2             2             106
  T3             1              13
  T4             0               8
D161V7, multiclass
       clus
vv      LCE1F MUTATED LCE1F WILD-TYPE
  N0                1              94
  N1                1              36
  N2+N3             2              33
D161V8, multiclass
    clus
vv   LCE1F MUTATED LCE1F WILD-TYPE
  M0             4             133
  M1             0               9
  MX             0              22
D161V9, multiclass
     clus
vv    LCE1F MUTATED LCE1F WILD-TYPE
  I               0              88
  II              2              31
  III             2              37
  IV              0               9
D161V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1F MUTATED      0    4
  LCE1F WILD-TYPE   16  152
     clus
vv    LCE1F MUTATED LCE1F WILD-TYPE
  NO              0              16
  YES             4             152
D161V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LCE1F MUTATED      0    4
  LCE1F WILD-TYPE   28  140
     clus
vv    LCE1F MUTATED LCE1F WILD-TYPE
  NO              0              28
  YES             4             140

Clustering(162) Variable = RIT2 MUTATION ANALYSIS
D162V1, survival
                sevent
clus2             0  1
  RIT2 MUTATED    2  1
  RIT2 WILD-TYPE 97 49
  RIT2 MUTATED RIT2 WILD-TYPE 
             3            146 
  RIT2 MUTATED RIT2 WILD-TYPE 
             1             49 
$`RIT2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-49-6742 
        9.96        26.01        15.02 

$`RIT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        43.20        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  RIT2 MUTATED RIT2 WILD-TYPE 
          9.96           0.07 
  RIT2 MUTATED RIT2 WILD-TYPE 
         26.01          85.32 
  RIT2 MUTATED RIT2 WILD-TYPE 
         15.02          13.51 
[1] "10.0 - 26.0 (15.0)" "0.1 - 85.3 (13.5)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "RIT2 MUTATED" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE"   "RIT2 MUTATED" "RIT2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" "RIT2 WILD-TYPE" 
    TCGA-91-6836 
"RIT2 WILD-TYPE" 
[1] "hr=" "1.4"
D162V2, continuous
D162V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      1    2
  RIT2 WILD-TYPE   92   77
        clus
vv       RIT2 MUTATED RIT2 WILD-TYPE
  FEMALE            1             92
  MALE              2             77
D162V4, continuous
D162V5, multiclass
D162V6, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  T1            0             41
  T2            2            106
  T3            0             14
  T4            1              7
D162V7, multiclass
       clus
vv      RIT2 MUTATED RIT2 WILD-TYPE
  N0               0             95
  N1               3             34
  N2+N3            0             35
D162V8, multiclass
    clus
vv   RIT2 MUTATED RIT2 WILD-TYPE
  M0            2            135
  M1            0              9
  MX            1             21
D162V9, multiclass
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  I              0             88
  II             2             31
  III            1             38
  IV             0              9
D162V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      0    3
  RIT2 WILD-TYPE   16  153
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  NO             0             16
  YES            3            153
D162V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT2 MUTATED      1    2
  RIT2 WILD-TYPE   27  142
     clus
vv    RIT2 MUTATED RIT2 WILD-TYPE
  NO             1             27
  YES            2            142

Clustering(163) Variable = FOXI1 MUTATION ANALYSIS
D163V1, survival
                 sevent
clus2              0  1
  FOXI1 MUTATED    4  3
  FOXI1 WILD-TYPE 95 47
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              7             142 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
              3              47 
$`FOXI1 MUTATED`
TCGA-05-4382 TCGA-05-4426 TCGA-05-4430 TCGA-38-4629 TCGA-44-2657 TCGA-50-6590 
       19.92        26.01        25.02        28.37        13.15        42.31 
TCGA-50-6592 
       25.51 

$`FOXI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  FOXI1 MUTATED FOXI1 WILD-TYPE 
          13.15            0.07 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
          42.31           85.32 
  FOXI1 MUTATED FOXI1 WILD-TYPE 
         25.510          12.825 
[1] "13.2 - 42.3 (25.5)" "0.1 - 85.3 (12.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FOXI1 WILD-TYPE"   "FOXI1 MUTATED" "FOXI1 WILD-TYPE"   "FOXI1 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" "FOXI1 WILD-TYPE" 
     TCGA-91-6836 
"FOXI1 WILD-TYPE" 
[1] "hr=" "1.1"
D163V2, continuous
D163V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      4    4
  FOXI1 WILD-TYPE   89   75
        clus
vv       FOXI1 MUTATED FOXI1 WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D163V4, continuous
D163V5, multiclass
D163V6, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  T1             0              41
  T2             7             101
  T3             1              13
  T4             0               8
D163V7, multiclass
       clus
vv      FOXI1 MUTATED FOXI1 WILD-TYPE
  N0                7              88
  N1                0              37
  N2+N3             0              35
D163V8, multiclass
    clus
vv   FOXI1 MUTATED FOXI1 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             0              22
D163V9, multiclass
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  I               7              81
  II              1              32
  III             0              39
  IV              0               9
D163V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      0    8
  FOXI1 WILD-TYPE   16  148
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  NO              0              16
  YES             8             148
D163V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXI1 MUTATED      0    8
  FOXI1 WILD-TYPE   28  136
     clus
vv    FOXI1 MUTATED FOXI1 WILD-TYPE
  NO              0              28
  YES             8             136

Clustering(164) Variable = TBX5 MUTATION ANALYSIS
D164V1, survival
                sevent
clus2             0  1
  TBX5 MUTATED    6  4
  TBX5 WILD-TYPE 93 46
  TBX5 MUTATED TBX5 WILD-TYPE 
            10            139 
  TBX5 MUTATED TBX5 WILD-TYPE 
             4             46 
$`TBX5 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-35-4122 TCGA-44-2655 TCGA-44-2656 TCGA-50-5933 
        3.98         9.96         7.36        18.87        19.10        77.88 
TCGA-55-5899 TCGA-67-6217 TCGA-73-4659 TCGA-91-6828 
        2.86        13.87        23.38         1.22 

$`TBX5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.32         4.01         1.25        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  TBX5 MUTATED TBX5 WILD-TYPE 
          1.22           0.07 
  TBX5 MUTATED TBX5 WILD-TYPE 
         77.88          85.32 
  TBX5 MUTATED TBX5 WILD-TYPE 
        11.915         14.010 
[1] "1.2 - 77.9 (11.9)" "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE"   "TBX5 MUTATED" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX5 WILD-TYPE"   "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
  "TBX5 MUTATED" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-91-6836 
"TBX5 WILD-TYPE" 
[1] "hr=" "1.3"
D164V2, continuous
D164V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      3    8
  TBX5 WILD-TYPE   90   71
        clus
vv       TBX5 MUTATED TBX5 WILD-TYPE
  FEMALE            3             90
  MALE              8             71
D164V4, continuous
[1] "Remove cluster labels:" "TBX5 MUTATED"          
clus
  TBX5 MUTATED TBX5 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"TBX5 WILD-TYPE" "TBX5 WILD-TYPE" 
D164V5, multiclass
D164V6, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  T1            4             37
  T2            4            104
  T3            1             13
  T4            2              6
D164V7, multiclass
       clus
vv      TBX5 MUTATED TBX5 WILD-TYPE
  N0               5             90
  N1               4             33
  N2+N3            2             33
D164V8, multiclass
    clus
vv   TBX5 MUTATED TBX5 WILD-TYPE
  M0           10            127
  M1            0              9
  MX            1             21
D164V9, multiclass
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  I              6             82
  II             1             32
  III            4             35
  IV             0              9
D164V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      1   10
  TBX5 WILD-TYPE   15  146
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  NO             1             15
  YES           10            146
D164V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX5 MUTATED      0   11
  TBX5 WILD-TYPE   28  133
     clus
vv    TBX5 MUTATED TBX5 WILD-TYPE
  NO             0             28
  YES           11            133

Clustering(165) Variable = NPFFR2 MUTATION ANALYSIS
D165V1, survival
                  sevent
clus2               0  1
  NPFFR2 MUTATED    7  0
  NPFFR2 WILD-TYPE 92 50
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               7              142 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               0               50 
$`NPFFR2 MUTATED`
TCGA-05-4405 TCGA-35-3615 TCGA-44-4112 TCGA-44-6776 TCGA-44-6778 TCGA-67-3774 
       20.05         0.46         4.60        63.72        36.49         0.59 
TCGA-73-4666 
       20.28 

$`NPFFR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
        7.33         0.99         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
            0.46             0.07 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           63.72            85.32 
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
           20.05            13.51 
[1] "0.5 - 63.7 (20.1)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE"   "NPFFR2 MUTATED" "NPFFR2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-91-6836 
"NPFFR2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      6    4
  NPFFR2 WILD-TYPE   87   75
        clus
vv       NPFFR2 MUTATED NPFFR2 WILD-TYPE
  FEMALE              6               87
  MALE                4               75
D165V4, continuous
[1] "Remove cluster labels:" "NPFFR2 MUTATED"        
clus
  NPFFR2 MUTATED NPFFR2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" "NPFFR2 WILD-TYPE" 
D165V5, multiclass
D165V6, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  T1              4               37
  T2              5              103
  T3              1               13
  T4              0                8
D165V7, multiclass
       clus
vv      NPFFR2 MUTATED NPFFR2 WILD-TYPE
  N0                 9               86
  N1                 0               37
  N2+N3              1               34
D165V8, multiclass
    clus
vv   NPFFR2 MUTATED NPFFR2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              2               20
D165V9, multiclass
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  I                8               80
  II               0               33
  III              1               38
  IV               1                8
D165V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      1    9
  NPFFR2 WILD-TYPE   15  147
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  NO               1               15
  YES              9              147
D165V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NPFFR2 MUTATED      2    8
  NPFFR2 WILD-TYPE   26  136
     clus
vv    NPFFR2 MUTATED NPFFR2 WILD-TYPE
  NO               2               26
  YES              8              136

Clustering(166) Variable = COL25A1 MUTATION ANALYSIS
D166V1, survival
                   sevent
clus2                0  1
  COL25A1 MUTATED    5  3
  COL25A1 WILD-TYPE 94 47
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                8               141 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                3                47 
$`COL25A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5715 TCGA-38-4631 TCGA-44-2656 TCGA-44-2665 
       19.92         9.96         2.04        11.64        19.10        13.15 
TCGA-44-3398 TCGA-49-4510 
        8.32        29.46 

$`COL25A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  COL25A1 MUTATED COL25A1 WILD-TYPE 
             2.04              0.07 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
            29.46             85.32 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
           12.395            14.010 
[1] "2.0 - 29.5 (12.4)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6836 
"COL25A1 WILD-TYPE" 
[1] "hr=" "2.1"
D166V2, continuous
D166V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      6    5
  COL25A1 WILD-TYPE   87   74
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  FEMALE               6                87
  MALE                 5                74
D166V4, continuous
D166V5, multiclass
D166V6, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  T1               1                40
  T2               8               100
  T3               1                13
  T4               1                 7
D166V7, multiclass
       clus
vv      COL25A1 MUTATED COL25A1 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               1                34
D166V8, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  M0              11               126
  M1               0                 9
  MX               0                22
D166V9, multiclass
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  I                 7                81
  II                2                31
  III               2                37
  IV                0                 9
D166V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      0   11
  COL25A1 WILD-TYPE   16  145
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  NO                0                16
  YES              11               145
D166V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      1   10
  COL25A1 WILD-TYPE   27  134
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  NO                1                27
  YES              10               134

Clustering(167) Variable = ESYT2 MUTATION ANALYSIS
D167V1, survival
                 sevent
clus2              0  1
  ESYT2 MUTATED    2  3
  ESYT2 WILD-TYPE 97 47
  ESYT2 MUTATED ESYT2 WILD-TYPE 
              5             144 
  ESYT2 MUTATED ESYT2 WILD-TYPE 
              3              47 
$`ESYT2 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-44-3919 TCGA-50-5044 TCGA-64-1678 
        9.96        24.03         6.21        20.48        39.09 

$`ESYT2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
        4.93        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  ESYT2 MUTATED ESYT2 WILD-TYPE 
           6.21            0.07 
  ESYT2 MUTATED ESYT2 WILD-TYPE 
          39.09           85.32 
  ESYT2 MUTATED ESYT2 WILD-TYPE 
          20.48           13.51 
[1] "6.2 - 39.1 (20.5)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESYT2 WILD-TYPE"   "ESYT2 MUTATED"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6836 
"ESYT2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESYT2 WILD-TYPE"   "ESYT2 MUTATED"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6836 
"ESYT2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ESYT2 WILD-TYPE"   "ESYT2 MUTATED"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE"   "ESYT2 MUTATED" "ESYT2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" "ESYT2 WILD-TYPE" 
     TCGA-91-6836 
"ESYT2 WILD-TYPE" 
[1] "hr=" "2.1"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESYT2 MUTATED      4    3
  ESYT2 WILD-TYPE   89   76
        clus
vv       ESYT2 MUTATED ESYT2 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D167V4, continuous
D167V5, multiclass
D167V6, multiclass
    clus
vv   ESYT2 MUTATED ESYT2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             0              14
  T4             2               6
D167V7, multiclass
       clus
vv      ESYT2 MUTATED ESYT2 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             0              35
D167V8, multiclass
    clus
vv   ESYT2 MUTATED ESYT2 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
D167V9, multiclass
     clus
vv    ESYT2 MUTATED ESYT2 WILD-TYPE
  I               3              85
  II              2              31
  III             2              37
  IV              0               9
D167V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESYT2 MUTATED      0    7
  ESYT2 WILD-TYPE   16  149
     clus
vv    ESYT2 MUTATED ESYT2 WILD-TYPE
  NO              0              16
  YES             7             149
D167V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESYT2 MUTATED      1    6
  ESYT2 WILD-TYPE   27  138
     clus
vv    ESYT2 MUTATED ESYT2 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(168) Variable = FGF14 MUTATION ANALYSIS
D168V1, survival
                 sevent
clus2              0  1
  FGF14 MUTATED    2  4
  FGF14 WILD-TYPE 97 46
  FGF14 MUTATED FGF14 WILD-TYPE 
              6             143 
  FGF14 MUTATED FGF14 WILD-TYPE 
              4              46 
$`FGF14 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-3918 TCGA-49-4494 TCGA-50-5930 TCGA-64-5775 
       19.92         9.96         6.44        35.54         9.27         0.10 

$`FGF14 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FGF14 MUTATED FGF14 WILD-TYPE 
           0.10            0.07 
  FGF14 MUTATED FGF14 WILD-TYPE 
          35.54           85.32 
  FGF14 MUTATED FGF14 WILD-TYPE 
          9.615          14.010 
[1] "0.1 - 35.5 (9.6)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FGF14 WILD-TYPE"   "FGF14 MUTATED" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" "FGF14 WILD-TYPE" 
     TCGA-91-6836 
"FGF14 WILD-TYPE" 
[1] "hr=" "3.7"
D168V2, continuous
D168V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   92   73
        clus
vv       FGF14 MUTATED FGF14 WILD-TYPE
  FEMALE             1              92
  MALE               6              73
D168V4, continuous
D168V5, multiclass
D168V6, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  T1             1              40
  T2             3             105
  T3             1              13
  T4             2               6
D168V7, multiclass
       clus
vv      FGF14 MUTATED FGF14 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             2              33
D168V8, multiclass
    clus
vv   FGF14 MUTATED FGF14 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
D168V9, multiclass
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  I               3              85
  II              0              33
  III             4              35
  IV              0               9
D168V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      1    6
  FGF14 WILD-TYPE   15  150
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  NO              1              15
  YES             6             150
D168V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FGF14 MUTATED      0    7
  FGF14 WILD-TYPE   28  137
     clus
vv    FGF14 MUTATED FGF14 WILD-TYPE
  NO              0              28
  YES             7             137

Clustering(169) Variable = C2ORF51 MUTATION ANALYSIS
D169V1, survival
                   sevent
clus2                0  1
  C2ORF51 MUTATED    3  1
  C2ORF51 WILD-TYPE 96 49
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                4               145 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                49 
$`C2ORF51 MUTATED`
TCGA-05-4396 TCGA-35-5375 TCGA-38-4625 TCGA-67-6217 
        9.96         8.68        47.61        13.87 

$`C2ORF51 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
             8.68              0.07 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
            47.61             85.32 
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
           11.915            14.010 
[1] "8.7 - 47.6 (11.9)" "0.1 - 85.3 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C2ORF51 WILD-TYPE"   "C2ORF51 MUTATED" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-91-6836 
"C2ORF51 WILD-TYPE" 
[1] "hr=" "1.3"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      2    3
  C2ORF51 WILD-TYPE   91   76
        clus
vv       C2ORF51 MUTATED C2ORF51 WILD-TYPE
  FEMALE               2                91
  MALE                 3                76
D169V4, continuous
[1] "Remove cluster labels:" "C2ORF51 MUTATED"       
clus
  C2ORF51 MUTATED C2ORF51 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" "C2ORF51 WILD-TYPE" 
D169V5, multiclass
D169V6, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  T1               0                41
  T2               4               104
  T3               0                14
  T4               1                 7
D169V7, multiclass
       clus
vv      C2ORF51 MUTATED C2ORF51 WILD-TYPE
  N0                  2                93
  N1                  2                35
  N2+N3               1                34
D169V8, multiclass
    clus
vv   C2ORF51 MUTATED C2ORF51 WILD-TYPE
  M0               5               132
  M1               0                 9
  MX               0                22
D169V9, multiclass
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  I                 2                86
  II                1                32
  III               2                37
  IV                0                 9
D169V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      0    5
  C2ORF51 WILD-TYPE   16  151
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  NO                0                16
  YES               5               151
D169V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF51 MUTATED      0    5
  C2ORF51 WILD-TYPE   28  139
     clus
vv    C2ORF51 MUTATED C2ORF51 WILD-TYPE
  NO                0                28
  YES               5               139

Clustering(170) Variable = SORCS1 MUTATION ANALYSIS
D170V1, survival
                  sevent
clus2               0  1
  SORCS1 MUTATED   13  8
  SORCS1 WILD-TYPE 86 42
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              21              128 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8               42 
$`SORCS1 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 
       19.92        37.02        24.03        47.05         8.98        26.01 
TCGA-35-4123 TCGA-38-4632 TCGA-44-6145 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 
        5.95        44.61         3.35        12.99        71.47        48.82 
TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 TCGA-50-6595 TCGA-55-1594 TCGA-64-5781 
       77.88         9.37        42.31         6.21        38.73        39.52 
TCGA-73-4666 TCGA-91-6829 TCGA-91-6836 
       20.28        41.33         0.36 

$`SORCS1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        14.01         9.96         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93        29.95        30.02        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         7.36         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       12.16        33.37        23.05        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  SORCS1 MUTATED SORCS1 WILD-TYPE 
            0.36             0.07 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
           77.88            85.32 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
           26.01            12.46 
[1] "0.4 - 77.9 (26.0)" "0.1 - 85.3 (12.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6836 
  "SORCS1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6836 
  "SORCS1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-91-6836 
  "SORCS1 MUTATED" 
[1] "hr=" "1.6"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     12   11
  SORCS1 WILD-TYPE   81   68
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE             12               81
  MALE               11               68
D170V4, continuous
D170V5, multiclass
D170V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              4               37
  T2             16               92
  T3              1               13
  T4              2                6
D170V7, multiclass
       clus
vv      SORCS1 MUTATED SORCS1 WILD-TYPE
  N0                12               83
  N1                 5               32
  N2+N3              6               29
D170V8, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  M0             18              119
  M1              2                7
  MX              3               19
D170V9, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  I               12               76
  II               3               30
  III              6               33
  IV               2                7
D170V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      4   19
  SORCS1 WILD-TYPE   12  137
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  NO               4               12
  YES             19              137
D170V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      2   21
  SORCS1 WILD-TYPE   26  123
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  NO               2               26
  YES             21              123

Clustering(171) Variable = GPR101 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2               0  1
  GPR101 MUTATED    5  2
  GPR101 WILD-TYPE 94 48
  GPR101 MUTATED GPR101 WILD-TYPE 
               7              142 
  GPR101 MUTATED GPR101 WILD-TYPE 
               2               48 
$`GPR101 MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 TCGA-44-6776 TCGA-44-6777 
       37.02        14.93        30.02        26.01        63.72        32.45 
TCGA-55-1592 
       23.05 

$`GPR101 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
        7.76         3.12         5.42         2.70        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GPR101 MUTATED GPR101 WILD-TYPE 
           14.93             0.07 
  GPR101 MUTATED GPR101 WILD-TYPE 
           63.72            85.32 
  GPR101 MUTATED GPR101 WILD-TYPE 
          30.020           12.825 
[1] "14.9 - 63.7 (30.0)" "0.1 - 85.3 (12.8)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED" "GPR101 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE"   "GPR101 MUTATED"   "GPR101 MUTATED" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "GPR101 MUTATED" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" "GPR101 WILD-TYPE" 
      TCGA-91-6836 
"GPR101 WILD-TYPE" 
[1] "hr=" "2"  
D171V2, continuous
D171V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      6    3
  GPR101 WILD-TYPE   87   76
        clus
vv       GPR101 MUTATED GPR101 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D171V4, continuous
D171V5, multiclass
D171V6, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  T1              1               40
  T2              6              102
  T3              2               12
  T4              0                8
D171V7, multiclass
       clus
vv      GPR101 MUTATED GPR101 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              0               35
D171V8, multiclass
    clus
vv   GPR101 MUTATED GPR101 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              3               19
D171V9, multiclass
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  I                6               82
  II               3               30
  III              0               39
  IV               0                9
D171V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      1    8
  GPR101 WILD-TYPE   15  148
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  NO               1               15
  YES              8              148
D171V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR101 MUTATED      0    9
  GPR101 WILD-TYPE   28  135
     clus
vv    GPR101 MUTATED GPR101 WILD-TYPE
  NO               0               28
  YES              9              135

Clustering(172) Variable = CDH18 MUTATION ANALYSIS
D172V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED   12  5
  CDH18 WILD-TYPE 87 45
  CDH18 MUTATED CDH18 WILD-TYPE 
             17             132 
  CDH18 MUTATED CDH18 WILD-TYPE 
              5              45 
$`CDH18 MUTATED`
TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-38-4631 
       47.05        30.02        26.01         8.68        47.61        11.64 
TCGA-44-3918 TCGA-44-6775 TCGA-44-6777 TCGA-49-4514 TCGA-49-6743 TCGA-50-5066 
        6.44         2.70        32.45        43.20        12.13         9.76 
TCGA-50-5931 TCGA-50-5933 TCGA-50-6592 TCGA-64-5781 TCGA-73-4668 
        8.78        77.88        25.51        39.52        15.35 

$`CDH18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.46        29.75        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  CDH18 MUTATED CDH18 WILD-TYPE 
           2.70            0.07 
  CDH18 MUTATED CDH18 WILD-TYPE 
          77.88           85.32 
  CDH18 MUTATED CDH18 WILD-TYPE 
          25.51           13.15 
[1] "2.7 - 77.9 (25.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-91-6836 
"CDH18 WILD-TYPE" 
[1] "hr=" "1.7"
D172V2, continuous
D172V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     14    7
  CDH18 WILD-TYPE   79   72
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE            14              79
  MALE               7              72
D172V4, continuous
D172V5, multiclass
D172V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             4              37
  T2            13              95
  T3             2              12
  T4             2               6
D172V7, multiclass
       clus
vv      CDH18 MUTATED CDH18 WILD-TYPE
  N0               12              83
  N1                3              34
  N2+N3             5              30
D172V8, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  M0            18             119
  M1             0               9
  MX             3              19
D172V9, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I              12              76
  II              4              29
  III             5              34
  IV              0               9
D172V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      2   19
  CDH18 WILD-TYPE   14  137
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  NO              2              14
  YES            19             137
D172V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      2   19
  CDH18 WILD-TYPE   26  125
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  NO              2              26
  YES            19             125

Clustering(173) Variable = GC MUTATION ANALYSIS
D173V1, survival
              sevent
clus2           0  1
  GC MUTATED    3  2
  GC WILD-TYPE 96 48
  GC MUTATED GC WILD-TYPE 
           5          144 
  GC MUTATED GC WILD-TYPE 
           2           48 
$`GC MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-44-2668 TCGA-64-5779 
       38.07         9.96        24.03         8.09        16.67 

$`GC WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       39.09        37.02        83.84         0.10        30.44        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  GC MUTATED GC WILD-TYPE 
        8.09         0.07 
  GC MUTATED GC WILD-TYPE 
       38.07        85.32 
  GC MUTATED GC WILD-TYPE 
       16.67        13.51 
[1] "8.1 - 38.1 (16.7)" "0.1 - 85.3 (13.5)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4390 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402   TCGA-05-4405 
  "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4415   TCGA-05-4417   TCGA-05-4418   TCGA-05-4420   TCGA-05-4424 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4426   TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4434   TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-91-6828 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
[1] "hr=" "1.4"
D173V2, continuous
D173V3, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      0    5
  GC WILD-TYPE   93   74
        clus
vv       GC MUTATED GC WILD-TYPE
  FEMALE          0           93
  MALE            5           74
D173V4, continuous
D173V5, multiclass
D173V6, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  T1          0           41
  T2          4          104
  T3          0           14
  T4          1            7
D173V7, multiclass
       clus
vv      GC MUTATED GC WILD-TYPE
  N0             2           93
  N1             2           35
  N2+N3          1           34
D173V8, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  M0          5          132
  M1          0            9
  MX          0           22
D173V9, multiclass
     clus
vv    GC MUTATED GC WILD-TYPE
  I            2           86
  II           1           32
  III          2           37
  IV           0            9
D173V10, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      0    5
  GC WILD-TYPE   16  151
     clus
vv    GC MUTATED GC WILD-TYPE
  NO           0           16
  YES          5          151
D173V11, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      1    4
  GC WILD-TYPE   27  140
     clus
vv    GC MUTATED GC WILD-TYPE
  NO           1           27
  YES          4          140

Clustering(174) Variable = OR4D10 MUTATION ANALYSIS
D174V1, survival
                  sevent
clus2               0  1
  OR4D10 MUTATED    3  1
  OR4D10 WILD-TYPE 96 49
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               4              145 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
               1               49 
$`OR4D10 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-50-5066 TCGA-91-6836 
        9.96        25.02         9.76         0.36 

$`OR4D10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  OR4D10 MUTATED OR4D10 WILD-TYPE 
            0.36             0.07 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
           25.02            85.32 
  OR4D10 MUTATED OR4D10 WILD-TYPE 
            9.86            14.01 
[1] "0.4 - 25.0 (9.9)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4D10 WILD-TYPE"   "OR4D10 MUTATED" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE"   "OR4D10 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" "OR4D10 WILD-TYPE" 
      TCGA-91-6836 
  "OR4D10 MUTATED" 
[1] "hr=" "1.7"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      2    3
  OR4D10 WILD-TYPE   91   76
        clus
vv       OR4D10 MUTATED OR4D10 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D174V4, continuous
D174V5, multiclass
D174V6, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              1                7
D174V7, multiclass
       clus
vv      OR4D10 MUTATED OR4D10 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              0               35
D174V8, multiclass
    clus
vv   OR4D10 MUTATED OR4D10 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D174V9, multiclass
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  I                4               84
  II               0               33
  III              1               38
  IV               0                9
D174V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      0    5
  OR4D10 WILD-TYPE   16  151
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  NO               0               16
  YES              5              151
D174V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4D10 MUTATED      0    5
  OR4D10 WILD-TYPE   28  139
     clus
vv    OR4D10 MUTATED OR4D10 WILD-TYPE
  NO               0               28
  YES              5              139

Clustering(175) Variable = TBX3 MUTATION ANALYSIS
D175V1, survival
                sevent
clus2             0  1
  TBX3 MUTATED    5  2
  TBX3 WILD-TYPE 94 48
  TBX3 MUTATED TBX3 WILD-TYPE 
             7            142 
  TBX3 MUTATED TBX3 WILD-TYPE 
             2             48 
$`TBX3 MUTATED`
TCGA-05-4250 TCGA-05-4427 TCGA-38-4629 TCGA-44-2656 TCGA-50-5049 TCGA-73-4662 
        3.98        26.01        28.37        19.10        48.82        29.95 
TCGA-73-4666 
       20.28 

$`TBX3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  TBX3 MUTATED TBX3 WILD-TYPE 
          3.98           0.07 
  TBX3 MUTATED TBX3 WILD-TYPE 
         48.82          85.32 
  TBX3 MUTATED TBX3 WILD-TYPE 
         26.01          13.07 
[1] "4.0 - 48.8 (26.0)" "0.1 - 85.3 (13.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "TBX3 MUTATED" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"TBX3 WILD-TYPE"   "TBX3 MUTATED"   "TBX3 MUTATED" "TBX3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-91-6836 
"TBX3 WILD-TYPE" 
[1] "hr=" "1.4"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      4    3
  TBX3 WILD-TYPE   89   76
        clus
vv       TBX3 MUTATED TBX3 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D175V4, continuous
[1] "Remove cluster labels:" "TBX3 MUTATED"          
clus
  TBX3 MUTATED TBX3 WILD-TYPE 
             2             10 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4668 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"TBX3 WILD-TYPE" "TBX3 WILD-TYPE" 
D175V5, multiclass
D175V6, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  T1            2             39
  T2            3            105
  T3            2             12
  T4            0              8
D175V7, multiclass
       clus
vv      TBX3 MUTATED TBX3 WILD-TYPE
  N0               5             90
  N1               2             35
  N2+N3            0             35
D175V8, multiclass
    clus
vv   TBX3 MUTATED TBX3 WILD-TYPE
  M0            6            131
  M1            1              8
  MX            0             22
D175V9, multiclass
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  I              3             85
  II             2             31
  III            1             38
  IV             1              8
D175V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      3    4
  TBX3 WILD-TYPE   13  152
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  NO             3             13
  YES            4            152
D175V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TBX3 MUTATED      2    5
  TBX3 WILD-TYPE   26  139
     clus
vv    TBX3 MUTATED TBX3 WILD-TYPE
  NO             2             26
  YES            5            139

Clustering(176) Variable = CYLC1 MUTATION ANALYSIS
D176V1, survival
                 sevent
clus2              0  1
  CYLC1 MUTATED    5  1
  CYLC1 WILD-TYPE 94 49
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              6             143 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              49 
$`CYLC1 MUTATED`
TCGA-38-4626 TCGA-49-6744 TCGA-50-5933 TCGA-64-1678 TCGA-64-5778 TCGA-64-5781 
       85.32        12.99        77.88        39.09        30.44        39.52 

$`CYLC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 
       20.65        37.02        83.84         0.10        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CYLC1 MUTATED CYLC1 WILD-TYPE 
          12.99            0.07 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
          85.32           83.84 
  CYLC1 MUTATED CYLC1 WILD-TYPE 
         39.305          13.150 
[1] "13.0 - 85.3 (39.3)" "0.1 - 83.8 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE"   "CYLC1 MUTATED" "CYLC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "CYLC1 MUTATED" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-91-6836 
"CYLC1 WILD-TYPE" 
[1] "hr=" "8.2"
D176V2, continuous
D176V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC1 MUTATED      4    2
  CYLC1 WILD-TYPE   89   77
        clus
vv       CYLC1 MUTATED CYLC1 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D176V4, continuous
[1] "Remove cluster labels:" "CYLC1 MUTATED"         
clus
  CYLC1 MUTATED CYLC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" "CYLC1 WILD-TYPE" 
D176V5, multiclass
D176V6, multiclass
    clus
vv   CYLC1 MUTATED CYLC1 WILD-TYPE
  T1             0              41
  T2             5             103
  T3             0              14
  T4             1               7
D176V7, multiclass
       clus
vv      CYLC1 MUTATED CYLC1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D176V8, multiclass
    clus
vv   CYLC1 MUTATED CYLC1 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D176V9, multiclass
     clus
vv    CYLC1 MUTATED CYLC1 WILD-TYPE
  I               2              86
  II              3              30
  III             1              38
  IV              0               9
D176V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC1 MUTATED      1    5
  CYLC1 WILD-TYPE   15  151
     clus
vv    CYLC1 MUTATED CYLC1 WILD-TYPE
  NO              1              15
  YES             5             151
D176V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYLC1 MUTATED      2    4
  CYLC1 WILD-TYPE   26  140
     clus
vv    CYLC1 MUTATED CYLC1 WILD-TYPE
  NO              2              26
  YES             4             140

Clustering(177) Variable = FAM47B MUTATION ANALYSIS
D177V1, survival
                  sevent
clus2               0  1
  FAM47B MUTATED    5  5
  FAM47B WILD-TYPE 94 45
  FAM47B MUTATED FAM47B WILD-TYPE 
              10              139 
  FAM47B MUTATED FAM47B WILD-TYPE 
               5               45 
$`FAM47B MUTATED`
TCGA-05-4398 TCGA-05-4420 TCGA-05-4432 TCGA-38-4631 TCGA-38-4632 TCGA-49-4505 
       47.05        29.95        25.02        11.64        44.61        14.07 
TCGA-50-5045 TCGA-55-1594 TCGA-64-5775 TCGA-64-5778 
       71.47        38.73         0.10        30.44 

$`FAM47B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        35.28         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         4.93        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 
       56.81        20.65        39.09        37.02        83.84        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  FAM47B MUTATED FAM47B WILD-TYPE 
            0.10             0.07 
  FAM47B MUTATED FAM47B WILD-TYPE 
           71.47            85.32 
  FAM47B MUTATED FAM47B WILD-TYPE 
          30.195           12.990 
[1] "0.1 - 71.5 (30.2)" "0.1 - 85.3 (13.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
  "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE"   "FAM47B MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"FAM47B WILD-TYPE"   "FAM47B MUTATED" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"FAM47B WILD-TYPE"   "FAM47B MUTATED"   "FAM47B MUTATED" "FAM47B WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-91-6836 
"FAM47B WILD-TYPE" 
[1] "hr=" "1.1"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      6    8
  FAM47B WILD-TYPE   87   71
        clus
vv       FAM47B MUTATED FAM47B WILD-TYPE
  FEMALE              6               87
  MALE                8               71
D177V4, continuous
[1] "Remove cluster labels:" "FAM47B MUTATED"        
clus
  FAM47B MUTATED FAM47B WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"FAM47B WILD-TYPE" "FAM47B WILD-TYPE" "FAM47B WILD-TYPE" 
D177V5, multiclass
D177V6, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  T1              0               41
  T2             10               98
  T3              2               12
  T4              2                6
D177V7, multiclass
       clus
vv      FAM47B MUTATED FAM47B WILD-TYPE
  N0                 6               89
  N1                 5               32
  N2+N3              3               32
D177V8, multiclass
    clus
vv   FAM47B MUTATED FAM47B WILD-TYPE
  M0             12              125
  M1              1                8
  MX              1               21
D177V9, multiclass
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  I                5               83
  II               4               29
  III              4               35
  IV               1                8
D177V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      1   13
  FAM47B WILD-TYPE   15  143
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  NO               1               15
  YES             13              143
D177V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM47B MUTATED      0   14
  FAM47B WILD-TYPE   28  130
     clus
vv    FAM47B MUTATED FAM47B WILD-TYPE
  NO               0               28
  YES             14              130

Clustering(178) Variable = OR4L1 MUTATION ANALYSIS
D178V1, survival
                 sevent
clus2              0  1
  OR4L1 MUTATED    3  2
  OR4L1 WILD-TYPE 96 48
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              5             144 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
              2              48 
$`OR4L1 MUTATED`
TCGA-05-4396 TCGA-44-3918 TCGA-44-5643 TCGA-44-6777 TCGA-91-6836 
        9.96         6.44         3.48        32.45         0.36 

$`OR4L1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        8.32         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  OR4L1 MUTATED OR4L1 WILD-TYPE 
           0.36            0.07 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
          32.45           85.32 
  OR4L1 MUTATED OR4L1 WILD-TYPE 
           6.44           14.04 
[1] "0.4 - 32.5 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR4L1 WILD-TYPE"   "OR4L1 MUTATED" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE"   "OR4L1 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" "OR4L1 WILD-TYPE" 
     TCGA-91-6836 
  "OR4L1 MUTATED" 
[1] "hr=" "2.8"
D178V2, continuous
D178V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      4    3
  OR4L1 WILD-TYPE   89   76
        clus
vv       OR4L1 MUTATED OR4L1 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D178V4, continuous
D178V5, multiclass
D178V6, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  T1             1              40
  T2             4             104
  T3             1              13
  T4             1               7
D178V7, multiclass
       clus
vv      OR4L1 MUTATED OR4L1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D178V8, multiclass
    clus
vv   OR4L1 MUTATED OR4L1 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             3              19
D178V9, multiclass
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  I               4              84
  II              1              32
  III             2              37
  IV              0               9
D178V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      2    5
  OR4L1 WILD-TYPE   14  151
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  NO              2              14
  YES             5             151
D178V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4L1 MUTATED      1    6
  OR4L1 WILD-TYPE   27  138
     clus
vv    OR4L1 MUTATED OR4L1 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(179) Variable = STXBP5L MUTATION ANALYSIS
D179V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED    9  2
  STXBP5L WILD-TYPE 90 48
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               11               138 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                48 
$`STXBP5L MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-38-4626 TCGA-44-2659 TCGA-44-4112 TCGA-44-6778 
        9.96        47.61        85.32        17.39         4.60        36.49 
TCGA-49-4505 TCGA-49-6744 TCGA-50-5941 TCGA-67-6217 TCGA-91-6836 
       14.07        12.99         9.37        13.87         0.36 

$`STXBP5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 
        2.04         0.46         7.36         5.95         8.68        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        19.10        13.15         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             0.36              0.07 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            85.32             83.84 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
            13.87             13.58 
[1] "0.4 - 85.3 (13.9)" "0.1 - 83.8 (13.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED"   "STXBP5L MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6836 
  "STXBP5L MUTATED" 
[1] "hr=" "2.5"
D179V2, continuous
D179V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      9    3
  STXBP5L WILD-TYPE   84   76
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE               9                84
  MALE                 3                76
D179V4, continuous
D179V5, multiclass
D179V6, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  T1               2                39
  T2               9                99
  T3               0                14
  T4               1                 7
D179V7, multiclass
       clus
vv      STXBP5L MUTATED STXBP5L WILD-TYPE
  N0                  6                89
  N1                  5                32
  N2+N3               1                34
D179V8, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  M0               9               128
  M1               0                 9
  MX               3                19
D179V9, multiclass
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  I                 5                83
  II                5                28
  III               2                37
  IV                0                 9
D179V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      0   12
  STXBP5L WILD-TYPE   16  144
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                0                16
  YES              12               144
D179V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      3    9
  STXBP5L WILD-TYPE   25  135
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                3                25
  YES               9               135

Clustering(180) Variable = TGFB2 MUTATION ANALYSIS
D180V1, survival
                 sevent
clus2              0  1
  TGFB2 MUTATED    4  2
  TGFB2 WILD-TYPE 95 48
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              6             143 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              2              48 
$`TGFB2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-3918 TCGA-44-6145 TCGA-49-4487 TCGA-64-5778 
       19.92         9.96         6.44         3.35        28.11        30.44 

$`TGFB2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        83.84         0.10        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  TGFB2 MUTATED TGFB2 WILD-TYPE 
           3.35            0.07 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
          30.44           85.32 
  TGFB2 MUTATED TGFB2 WILD-TYPE 
          14.94           13.87 
[1] "3.4 - 30.4 (14.9)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "TGFB2 MUTATED" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE"   "TGFB2 MUTATED" "TGFB2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-91-6836 
"TGFB2 WILD-TYPE" 
[1] "hr=" "1.5"
D180V2, continuous
D180V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      3    3
  TGFB2 WILD-TYPE   90   76
        clus
vv       TGFB2 MUTATED TGFB2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D180V4, continuous
[1] "Remove cluster labels:" "TGFB2 MUTATED"         
clus
  TGFB2 MUTATED TGFB2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" "TGFB2 WILD-TYPE" 
D180V5, multiclass
D180V6, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  T1             3              38
  T2             2             106
  T3             0              14
  T4             1               7
D180V7, multiclass
       clus
vv      TGFB2 MUTATED TGFB2 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
D180V8, multiclass
    clus
vv   TGFB2 MUTATED TGFB2 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             0              22
D180V9, multiclass
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  I               5              83
  II              0              33
  III             1              38
  IV              0               9
D180V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      0    6
  TGFB2 WILD-TYPE   16  150
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  NO              0              16
  YES             6             150
D180V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TGFB2 MUTATED      0    6
  TGFB2 WILD-TYPE   28  138
     clus
vv    TGFB2 MUTATED TGFB2 WILD-TYPE
  NO              0              28
  YES             6             138

Clustering(181) Variable = MAGEC2 MUTATION ANALYSIS
D181V1, survival
                  sevent
clus2               0  1
  MAGEC2 MUTATED    3  3
  MAGEC2 WILD-TYPE 96 47
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               6              143 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               3               47 
$`MAGEC2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-44-3918 TCGA-50-5045 TCGA-50-5051 TCGA-91-6829 
        9.96        26.01         6.44        71.47        14.96        41.33 

$`MAGEC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            6.44             0.07 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
           71.47            85.32 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
          20.485           13.150 
[1] "6.4 - 71.5 (20.5)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEC2 WILD-TYPE" 
[1] "hr=" "1"  
D181V2, continuous
D181V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      5    3
  MAGEC2 WILD-TYPE   88   76
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D181V4, continuous
D181V5, multiclass
D181V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              1               13
  T4              1                7
D181V7, multiclass
       clus
vv      MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0                 3               92
  N1                 4               33
  N2+N3              1               34
D181V8, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0              6              131
  M1              0                9
  MX              2               20
D181V9, multiclass
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  I                3               85
  II               3               30
  III              2               37
  IV               0                9
D181V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      2    6
  MAGEC2 WILD-TYPE   14  150
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               2               14
  YES              6              150
D181V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      0    8
  MAGEC2 WILD-TYPE   28  136
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               0               28
  YES              8              136

Clustering(182) Variable = TUBB4Q MUTATION ANALYSIS
D182V1, survival
                  sevent
clus2               0  1
  TUBB4Q MUTATED    7  1
  TUBB4Q WILD-TYPE 92 49
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               8              141 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               1               49 
$`TUBB4Q MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-44-2656 
        9.96        30.02        26.01        24.00         8.68        19.10 
TCGA-55-5899 TCGA-91-6836 
        2.86         0.36 

$`TUBB4Q WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        25.02        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        44.61         5.19        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
            0.36             0.07 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
           30.02            85.32 
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
           14.53            13.87 
[1] "0.4 - 30.0 (14.5)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBB4Q WILD-TYPE"   "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
  "TUBB4Q MUTATED" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-91-6836 
  "TUBB4Q MUTATED" 
[1] "hr=" "1.7"
D182V2, continuous
D182V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBB4Q MUTATED      3    6
  TUBB4Q WILD-TYPE   90   73
        clus
vv       TUBB4Q MUTATED TUBB4Q WILD-TYPE
  FEMALE              3               90
  MALE                6               73
D182V4, continuous
[1] "Remove cluster labels:" "TUBB4Q MUTATED"        
clus
  TUBB4Q MUTATED TUBB4Q WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" "TUBB4Q WILD-TYPE" 
D182V5, multiclass
D182V6, multiclass
    clus
vv   TUBB4Q MUTATED TUBB4Q WILD-TYPE
  T1              1               40
  T2              5              103
  T3              2               12
  T4              1                7
D182V7, multiclass
       clus
vv      TUBB4Q MUTATED TUBB4Q WILD-TYPE
  N0                 5               90
  N1                 3               34
  N2+N3              1               34
D182V8, multiclass
    clus
vv   TUBB4Q MUTATED TUBB4Q WILD-TYPE
  M0              7              130
  M1              0                9
  MX              2               20
D182V9, multiclass
     clus
vv    TUBB4Q MUTATED TUBB4Q WILD-TYPE
  I                4               84
  II               3               30
  III              2               37
  IV               0                9
D182V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBB4Q MUTATED      0    9
  TUBB4Q WILD-TYPE   16  147
     clus
vv    TUBB4Q MUTATED TUBB4Q WILD-TYPE
  NO               0               16
  YES              9              147
D182V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBB4Q MUTATED      0    9
  TUBB4Q WILD-TYPE   28  135
     clus
vv    TUBB4Q MUTATED TUBB4Q WILD-TYPE
  NO               0               28
  YES              9              135

Clustering(183) Variable = BIRC8 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  BIRC8 MUTATED    2  3
  BIRC8 WILD-TYPE 97 47
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              5             144 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              3              47 
$`BIRC8 MUTATED`
TCGA-05-4250 TCGA-44-6774 TCGA-49-4486 TCGA-73-4668 TCGA-91-6829 
        3.98         5.42        76.21        15.35        41.33 

$`BIRC8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
        0.30         3.35         9.93         7.76         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        36.49        16.41        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  BIRC8 MUTATED BIRC8 WILD-TYPE 
           3.98            0.07 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          76.21           85.32 
  BIRC8 MUTATED BIRC8 WILD-TYPE 
          15.35           13.51 
[1] "4.0 - 76.2 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE"   "BIRC8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"BIRC8 WILD-TYPE"   "BIRC8 MUTATED" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-91-6836 
"BIRC8 WILD-TYPE" 
[1] "hr=" "1.1"
D183V2, continuous
D183V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      3    3
  BIRC8 WILD-TYPE   90   76
        clus
vv       BIRC8 MUTATED BIRC8 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D183V4, continuous
[1] "Remove cluster labels:" "BIRC8 MUTATED"         
clus
  BIRC8 MUTATED BIRC8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" "BIRC8 WILD-TYPE" 
D183V5, multiclass
D183V6, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             1              13
  T4             0               8
D183V7, multiclass
       clus
vv      BIRC8 MUTATED BIRC8 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             1              34
D183V8, multiclass
    clus
vv   BIRC8 MUTATED BIRC8 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D183V9, multiclass
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  I               3              85
  II              1              32
  III             2              37
  IV              0               9
D183V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      0    6
  BIRC8 WILD-TYPE   16  150
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  NO              0              16
  YES             6             150
D183V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BIRC8 MUTATED      1    5
  BIRC8 WILD-TYPE   27  139
     clus
vv    BIRC8 MUTATED BIRC8 WILD-TYPE
  NO              1              27
  YES             5             139

Clustering(184) Variable = OR10T2 MUTATION ANALYSIS
D184V1, survival
                  sevent
clus2               0  1
  OR10T2 MUTATED    5  2
  OR10T2 WILD-TYPE 94 48
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               7              142 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
               2               48 
$`OR10T2 MUTATED`
TCGA-05-4424 TCGA-05-4432 TCGA-44-2659 TCGA-44-6145 TCGA-49-4507 TCGA-55-1592 
       30.02        25.02        17.39         3.35         8.81        23.05 
TCGA-64-5781 
       39.52 

$`OR10T2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        29.95        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        13.15         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR10T2 MUTATED OR10T2 WILD-TYPE 
            3.35             0.07 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           39.52            85.32 
  OR10T2 MUTATED OR10T2 WILD-TYPE 
           23.05            13.15 
[1] "3.4 - 39.5 (23.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE"   "OR10T2 MUTATED" "OR10T2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "OR10T2 MUTATED" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" "OR10T2 WILD-TYPE" 
      TCGA-91-6836 
"OR10T2 WILD-TYPE" 
[1] "hr=" "1.1"
D184V2, continuous
D184V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      4    3
  OR10T2 WILD-TYPE   89   76
        clus
vv       OR10T2 MUTATED OR10T2 WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D184V4, continuous
D184V5, multiclass
D184V6, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              2               12
  T4              0                8
D184V7, multiclass
       clus
vv      OR10T2 MUTATED OR10T2 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D184V8, multiclass
    clus
vv   OR10T2 MUTATED OR10T2 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D184V9, multiclass
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  I                3               85
  II               3               30
  III              1               38
  IV               0                9
D184V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      1    6
  OR10T2 WILD-TYPE   15  150
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  NO               1               15
  YES              6              150
D184V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10T2 MUTATED      2    5
  OR10T2 WILD-TYPE   26  139
     clus
vv    OR10T2 MUTATED OR10T2 WILD-TYPE
  NO               2               26
  YES              5              139

Clustering(185) Variable = OR51I1 MUTATION ANALYSIS
D185V1, survival
                  sevent
clus2               0  1
  OR51I1 MUTATED    5  1
  OR51I1 WILD-TYPE 94 49
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               6              143 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
               1               49 
$`OR51I1 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-3918 TCGA-49-4514 TCGA-50-5933 TCGA-55-6712 
       30.02        26.01         6.44        43.20        77.88         0.79 

$`OR51I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR51I1 MUTATED OR51I1 WILD-TYPE 
            0.79             0.07 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
           77.88            85.32 
  OR51I1 MUTATED OR51I1 WILD-TYPE 
          28.015           13.150 
[1] "0.8 - 77.9 (28.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51I1 WILD-TYPE"   "OR51I1 MUTATED" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE"   "OR51I1 MUTATED" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" "OR51I1 WILD-TYPE" 
      TCGA-91-6836 
"OR51I1 WILD-TYPE" 
[1] "hr=" "4.1"
D185V2, continuous
D185V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I1 MUTATED      3    3
  OR51I1 WILD-TYPE   90   76
        clus
vv       OR51I1 MUTATED OR51I1 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D185V4, continuous
D185V5, multiclass
D185V6, multiclass
    clus
vv   OR51I1 MUTATED OR51I1 WILD-TYPE
  T1              2               39
  T2              2              106
  T3              1               13
  T4              1                7
D185V7, multiclass
       clus
vv      OR51I1 MUTATED OR51I1 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              1               34
D185V8, multiclass
    clus
vv   OR51I1 MUTATED OR51I1 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D185V9, multiclass
     clus
vv    OR51I1 MUTATED OR51I1 WILD-TYPE
  I                2               86
  II               2               31
  III              1               38
  IV               0                9
D185V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I1 MUTATED      1    5
  OR51I1 WILD-TYPE   15  151
     clus
vv    OR51I1 MUTATED OR51I1 WILD-TYPE
  NO               1               15
  YES              5              151
D185V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51I1 MUTATED      0    6
  OR51I1 WILD-TYPE   28  138
     clus
vv    OR51I1 MUTATED OR51I1 WILD-TYPE
  NO               0               28
  YES              6              138

Clustering(186) Variable = TRIM48 MUTATION ANALYSIS
D186V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    2  3
  TRIM48 WILD-TYPE 97 47
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              144 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               3               47 
$`TRIM48 MUTATED`
TCGA-05-4396 TCGA-38-4629 TCGA-50-5941 TCGA-50-6594 TCGA-91-6831 
        9.96        28.37         9.37        12.16         1.28 

$`TRIM48 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22        41.33         1.15         0.36 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            1.28             0.07 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           28.37            85.32 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
            9.96            14.04 
[1] "1.3 - 28.4 (10.0)" "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-91-6836 
"TRIM48 WILD-TYPE" 
[1] "hr=" "3.8"
D186V2, continuous
D186V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      2    3
  TRIM48 WILD-TYPE   91   76
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D186V4, continuous
D186V5, multiclass
D186V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              0               41
  T2              2              106
  T3              2               12
  T4              1                7
D186V7, multiclass
       clus
vv      TRIM48 MUTATED TRIM48 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              2               33
D186V8, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              1               21
D186V9, multiclass
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  I                1               87
  II               1               32
  III              3               36
  IV               0                9
D186V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      0    5
  TRIM48 WILD-TYPE   16  151
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               0               16
  YES              5              151
D186V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      0    5
  TRIM48 WILD-TYPE   28  139
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               0               28
  YES              5              139

Clustering(187) Variable = MBD1 MUTATION ANALYSIS
D187V1, survival
                sevent
clus2             0  1
  MBD1 MUTATED    3  2
  MBD1 WILD-TYPE 96 48
  MBD1 MUTATED MBD1 WILD-TYPE 
             5            144 
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             48 
$`MBD1 MUTATED`
TCGA-49-4487 TCGA-55-1592 TCGA-55-5899 TCGA-67-3771 TCGA-73-4662 
       28.11        23.05         2.86         1.97        29.95 

$`MBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  MBD1 MUTATED MBD1 WILD-TYPE 
          1.97           0.07 
  MBD1 MUTATED MBD1 WILD-TYPE 
         29.95          85.32 
  MBD1 MUTATED MBD1 WILD-TYPE 
         23.05          13.51 
[1] "2.0 - 29.9 (23.1)" "0.1 - 85.3 (13.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6836 
"MBD1 WILD-TYPE" 
[1] "hr=" "1.7"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      3    3
  MBD1 WILD-TYPE   90   76
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  FEMALE            3             90
  MALE              3             76
D187V4, continuous
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D187V5, multiclass
D187V6, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  T1            4             37
  T2            2            106
  T3            0             14
  T4            0              8
D187V7, multiclass
       clus
vv      MBD1 MUTATED MBD1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
D187V8, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
D187V9, multiclass
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  I              6             82
  II             0             33
  III            0             39
  IV             0              9
D187V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      1    5
  MBD1 WILD-TYPE   15  151
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  NO             1             15
  YES            5            151
D187V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      1    5
  MBD1 WILD-TYPE   27  139
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  NO             1             27
  YES            5            139

Clustering(188) Variable = CACNA2D3 MUTATION ANALYSIS
D188V1, survival
                    sevent
clus2                 0  1
  CACNA2D3 MUTATED    9  1
  CACNA2D3 WILD-TYPE 90 49
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
                10                139 
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
                 1                 49 
$`CACNA2D3 MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-44-6778 TCGA-50-5051 TCGA-50-5066 TCGA-64-5775 
       37.02        14.93        36.49        14.96         9.76         0.10 
TCGA-64-5781 TCGA-67-3774 TCGA-73-4668 TCGA-91-6836 
       39.52         0.59        15.35         0.36 

$`CACNA2D3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 
        4.93        20.48        71.47        48.82        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         2.04         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
              0.10               0.07 
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
             39.52              85.32 
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
            14.945             13.150 
[1] "0.1 - 39.5 (14.9)" "0.1 - 85.3 (13.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
  "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
  "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
  "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"CACNA2D3 WILD-TYPE"   "CACNA2D3 MUTATED" 
[1] "hr=" "2.9"
D188V2, continuous
D188V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CACNA2D3 MUTATED      7    4
  CACNA2D3 WILD-TYPE   86   75
        clus
vv       CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  FEMALE                7                 86
  MALE                  4                 75
D188V4, continuous
[1] "Remove cluster labels:" "CACNA2D3 MUTATED"      
clus
  CACNA2D3 MUTATED CACNA2D3 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-5778         TCGA-71-6725 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"CACNA2D3 WILD-TYPE" "CACNA2D3 WILD-TYPE" 
D188V5, multiclass
D188V6, multiclass
    clus
vv   CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  T1                1                 40
  T2                8                100
  T3                1                 13
  T4                1                  7
D188V7, multiclass
       clus
vv      CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  N0                   9                 86
  N1                   1                 36
  N2+N3                1                 34
D188V8, multiclass
    clus
vv   CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  M0                9                128
  M1                0                  9
  MX                2                 20
D188V9, multiclass
     clus
vv    CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  I                  8                 80
  II                 1                 32
  III                2                 37
  IV                 0                  9
D188V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CACNA2D3 MUTATED      1   10
  CACNA2D3 WILD-TYPE   15  146
     clus
vv    CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  NO                 1                 15
  YES               10                146
D188V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  CACNA2D3 MUTATED      1   10
  CACNA2D3 WILD-TYPE   27  134
     clus
vv    CACNA2D3 MUTATED CACNA2D3 WILD-TYPE
  NO                 1                 27
  YES               10                134

Clustering(189) Variable = OR51A7 MUTATION ANALYSIS
D189V1, survival
                  sevent
clus2               0  1
  OR51A7 MUTATED    5  1
  OR51A7 WILD-TYPE 94 49
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               6              143 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               49 
$`OR51A7 MUTATED`
TCGA-05-4382 TCGA-44-3918 TCGA-50-5933 TCGA-50-6597 TCGA-67-6217 TCGA-73-4662 
       19.92         6.44        77.88        33.37        13.87        29.95 

$`OR51A7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR51A7 MUTATED OR51A7 WILD-TYPE 
            6.44             0.07 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
           77.88            85.32 
  OR51A7 MUTATED OR51A7 WILD-TYPE 
          24.935           13.150 
[1] "6.4 - 77.9 (24.9)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE"   "OR51A7 MUTATED" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR51A7 WILD-TYPE"   "OR51A7 MUTATED" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-91-6836 
"OR51A7 WILD-TYPE" 
[1] "hr=" "3.9"
D189V2, continuous
D189V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      5    2
  OR51A7 WILD-TYPE   88   77
        clus
vv       OR51A7 MUTATED OR51A7 WILD-TYPE
  FEMALE              5               88
  MALE                2               77
D189V4, continuous
[1] "Remove cluster labels:" "OR51A7 MUTATED"        
clus
  OR51A7 MUTATED OR51A7 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" "OR51A7 WILD-TYPE" 
D189V5, multiclass
D189V6, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  T1              2               39
  T2              4              104
  T3              0               14
  T4              1                7
D189V7, multiclass
       clus
vv      OR51A7 MUTATED OR51A7 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              1               34
D189V8, multiclass
    clus
vv   OR51A7 MUTATED OR51A7 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              0               22
D189V9, multiclass
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  I                5               83
  II               1               32
  III              1               38
  IV               0                9
D189V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      2    5
  OR51A7 WILD-TYPE   14  151
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  NO               2               14
  YES              5              151
D189V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51A7 MUTATED      1    6
  OR51A7 WILD-TYPE   27  138
     clus
vv    OR51A7 MUTATED OR51A7 WILD-TYPE
  NO               1               27
  YES              6              138

Clustering(190) Variable = TMEFF1 MUTATION ANALYSIS
D190V1, survival
                  sevent
clus2               0  1
  TMEFF1 MUTATED    4  0
  TMEFF1 WILD-TYPE 95 50
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               4              145 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
               0               50 
$`TMEFF1 MUTATED`
TCGA-05-4390 TCGA-05-4430 TCGA-38-4625 TCGA-64-1678 
       37.02        25.02        47.61        39.09 

$`TMEFF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
           25.02             0.07 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
           47.61            85.32 
  TMEFF1 MUTATED TMEFF1 WILD-TYPE 
          38.055           13.150 
[1] "25.0 - 47.6 (38.1)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6836 
"TMEFF1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6836 
"TMEFF1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE"   "TMEFF1 MUTATED" "TMEFF1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" "TMEFF1 WILD-TYPE" 
      TCGA-91-6836 
"TMEFF1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D190V2, continuous
D190V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEFF1 MUTATED      4    0
  TMEFF1 WILD-TYPE   89   79
        clus
vv       TMEFF1 MUTATED TMEFF1 WILD-TYPE
  FEMALE              4               89
  MALE                0               79
D190V4, continuous
D190V5, multiclass
D190V6, multiclass
    clus
vv   TMEFF1 MUTATED TMEFF1 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              0                8
D190V7, multiclass
       clus
vv      TMEFF1 MUTATED TMEFF1 WILD-TYPE
  N0                 4               91
  N1                 0               37
  N2+N3              0               35
D190V8, multiclass
    clus
vv   TMEFF1 MUTATED TMEFF1 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D190V9, multiclass
     clus
vv    TMEFF1 MUTATED TMEFF1 WILD-TYPE
  I                3               85
  II               1               32
  III              0               39
  IV               0                9
D190V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEFF1 MUTATED      0    4
  TMEFF1 WILD-TYPE   16  152
     clus
vv    TMEFF1 MUTATED TMEFF1 WILD-TYPE
  NO               0               16
  YES              4              152
D190V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMEFF1 MUTATED      1    3
  TMEFF1 WILD-TYPE   27  141
     clus
vv    TMEFF1 MUTATED TMEFF1 WILD-TYPE
  NO               1               27
  YES              3              141

Clustering(191) Variable = SLITRK2 MUTATION ANALYSIS
D191V1, survival
                   sevent
clus2                0  1
  SLITRK2 MUTATED   11  7
  SLITRK2 WILD-TYPE 88 43
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
               18               131 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                7                43 
$`SLITRK2 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 
        3.98         9.96        24.03        20.05        14.93        29.95 
TCGA-05-4430 TCGA-38-4626 TCGA-44-2657 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 
       25.02        85.32        13.15         9.76        77.88         9.37 
TCGA-55-1592 TCGA-55-6642 TCGA-64-1677 TCGA-64-5778 TCGA-67-6217 TCGA-91-6829 
       23.05        32.61        20.65        30.44        13.87        41.33 

$`SLITRK2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        2.96         8.98        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       38.73        48.62        45.17         2.86         0.07         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       56.81        39.09        37.02        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
             3.98              0.07 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            85.32             83.84 
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
            21.85             12.26 
[1] "4.0 - 85.3 (21.9)" "0.1 - 83.8 (12.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK2 WILD-TYPE"   "SLITRK2 MUTATED" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK2 WILD-TYPE" 
[1] "hr=" "1.3"
D191V2, continuous
D191V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      9   10
  SLITRK2 WILD-TYPE   84   69
        clus
vv       SLITRK2 MUTATED SLITRK2 WILD-TYPE
  FEMALE               9                84
  MALE                10                69
D191V4, continuous
[1] "Remove cluster labels:" "SLITRK2 MUTATED"       
clus
  SLITRK2 MUTATED SLITRK2 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-71-6725 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"SLITRK2 WILD-TYPE" "SLITRK2 WILD-TYPE" 
D191V5, multiclass
D191V6, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  T1               0                41
  T2              16                92
  T3               1                13
  T4               2                 6
D191V7, multiclass
       clus
vv      SLITRK2 MUTATED SLITRK2 WILD-TYPE
  N0                 11                84
  N1                  4                33
  N2+N3               3                32
D191V8, multiclass
    clus
vv   SLITRK2 MUTATED SLITRK2 WILD-TYPE
  M0              17               120
  M1               0                 9
  MX               2                20
D191V9, multiclass
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  I                11                77
  II                3                30
  III               5                34
  IV                0                 9
D191V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      1   18
  SLITRK2 WILD-TYPE   15  138
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  NO                1                15
  YES              18               138
D191V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK2 MUTATED      0   19
  SLITRK2 WILD-TYPE   28  125
     clus
vv    SLITRK2 MUTATED SLITRK2 WILD-TYPE
  NO                0                28
  YES              19               125

Clustering(192) Variable = DYTN MUTATION ANALYSIS
D192V1, survival
                sevent
clus2             0  1
  DYTN MUTATED    6  3
  DYTN WILD-TYPE 93 47
  DYTN MUTATED DYTN WILD-TYPE 
             9            140 
  DYTN MUTATED DYTN WILD-TYPE 
             3             47 
$`DYTN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-38-4626 TCGA-44-2666 TCGA-44-6779 TCGA-55-1592 
       37.02        14.93        85.32         3.19        16.41        23.05 
TCGA-64-1676 TCGA-64-5781 TCGA-91-6831 
       56.81        39.52         1.28 

$`DYTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DYTN MUTATED DYTN WILD-TYPE 
          1.28           0.07 
  DYTN MUTATED DYTN WILD-TYPE 
         85.32          83.84 
  DYTN MUTATED DYTN WILD-TYPE 
         23.05          13.07 
[1] "1.3 - 85.3 (23.1)" "0.1 - 83.8 (13.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-91-6836 
"DYTN WILD-TYPE" 
[1] "hr=" "1.9"
D192V2, continuous
D192V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      5    5
  DYTN WILD-TYPE   88   74
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D192V4, continuous
D192V5, multiclass
D192V6, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  T1            1             40
  T2            9             99
  T3            0             14
  T4            0              8
D192V7, multiclass
       clus
vv      DYTN MUTATED DYTN WILD-TYPE
  N0               9             86
  N1               1             36
  N2+N3            0             35
D192V8, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  M0            8            129
  M1            0              9
  MX            2             20
D192V9, multiclass
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  I              8             80
  II             2             31
  III            0             39
  IV             0              9
D192V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      0   10
  DYTN WILD-TYPE   16  146
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  NO             0             16
  YES           10            146
D192V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      0   10
  DYTN WILD-TYPE   28  134
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  NO             0             28
  YES           10            134

Clustering(193) Variable = RB1 MUTATION ANALYSIS
D193V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    4  3
  RB1 WILD-TYPE 95 47
  RB1 MUTATED RB1 WILD-TYPE 
            7           142 
  RB1 MUTATED RB1 WILD-TYPE 
            3            47 
$`RB1 MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-35-5375 TCGA-44-6775 TCGA-91-6828 TCGA-91-6829 
       24.03         2.96         8.68         2.70         1.22        41.33 
TCGA-91-6835 
        1.15 

$`RB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6831 TCGA-91-6836 
        4.01         1.25         1.28         0.36 

  RB1 MUTATED RB1 WILD-TYPE 
         1.15          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        41.33         85.32 
  RB1 MUTATED RB1 WILD-TYPE 
         2.96         14.04 
[1] "1.1 - 41.3 (3.0)"  "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "2.6"
D193V2, continuous
D193V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      2    5
  RB1 WILD-TYPE   91   74
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           2            91
  MALE             5            74
D193V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-75-5122 
"RB1 WILD-TYPE" 
D193V5, multiclass
D193V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            39
  T2           4           104
  T3           0            14
  T4           1             7
D193V7, multiclass
       clus
vv      RB1 MUTATED RB1 WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           2            33
D193V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0           3           134
  M1           0             9
  MX           4            18
D193V9, multiclass
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  I             4            84
  II            1            32
  III           2            37
  IV            0             9
D193V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   16  149
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            16
  YES           7           149
D193V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   28  137
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            28
  YES           7           137

Clustering(194) Variable = OR5D13 MUTATION ANALYSIS
D194V1, survival
                  sevent
clus2               0  1
  OR5D13 MUTATED    2  2
  OR5D13 WILD-TYPE 97 48
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               4              145 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               2               48 
$`OR5D13 MUTATED`
TCGA-35-4122 TCGA-50-5933 TCGA-50-6590 TCGA-67-6217 
        7.36        77.88        42.31        13.87 

$`OR5D13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
        2.04         0.59         0.89         0.69         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5D13 MUTATED OR5D13 WILD-TYPE 
            7.36             0.07 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           77.88            85.32 
  OR5D13 MUTATED OR5D13 WILD-TYPE 
           28.09            13.15 
[1] "7.4 - 77.9 (28.1)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE"   "OR5D13 MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5D13 WILD-TYPE"   "OR5D13 MUTATED" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-91-6836 
"OR5D13 WILD-TYPE" 
[1] "hr=" "1.6"
D194V2, continuous
D194V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      2    2
  OR5D13 WILD-TYPE   91   77
        clus
vv       OR5D13 MUTATED OR5D13 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D194V4, continuous
[1] "Remove cluster labels:" "OR5D13 MUTATED"        
clus
  OR5D13 MUTATED OR5D13 WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" "OR5D13 WILD-TYPE" 
D194V5, multiclass
D194V6, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  T1              1               40
  T2              2              106
  T3              0               14
  T4              1                7
D194V7, multiclass
       clus
vv      OR5D13 MUTATED OR5D13 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              1               34
D194V8, multiclass
    clus
vv   OR5D13 MUTATED OR5D13 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D194V9, multiclass
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               0                9
D194V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      1    3
  OR5D13 WILD-TYPE   15  153
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  NO               1               15
  YES              3              153
D194V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5D13 MUTATED      0    4
  OR5D13 WILD-TYPE   28  140
     clus
vv    OR5D13 MUTATED OR5D13 WILD-TYPE
  NO               0               28
  YES              4              140

Clustering(195) Variable = STAC3 MUTATION ANALYSIS
D195V1, survival
                 sevent
clus2              0  1
  STAC3 MUTATED    1  2
  STAC3 WILD-TYPE 98 48
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             146 
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              48 
$`STAC3 MUTATED`
TCGA-05-4396 TCGA-05-4434 TCGA-91-6836 
        9.96        15.02         0.36 

$`STAC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  STAC3 MUTATED STAC3 WILD-TYPE 
           0.36            0.07 
  STAC3 MUTATED STAC3 WILD-TYPE 
          15.02           85.32 
  STAC3 MUTATED STAC3 WILD-TYPE 
           9.96           13.94 
[1] "0.4 - 15.0 (10.0)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6836 
  "STAC3 MUTATED" 
[1] "hr=" "6.3"
D195V2, continuous
D195V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      2    1
  STAC3 WILD-TYPE   91   78
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  FEMALE             2              91
  MALE               1              78
D195V4, continuous
D195V5, multiclass
D195V6, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  T1             0              41
  T2             1             107
  T3             0              14
  T4             2               6
D195V7, multiclass
       clus
vv      STAC3 MUTATED STAC3 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             0              35
D195V8, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  M0             1             136
  M1             1               8
  MX             1              21
D195V9, multiclass
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  I               1              87
  II              0              33
  III             1              38
  IV              1               8
D195V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      0    3
  STAC3 WILD-TYPE   16  153
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  NO              0              16
  YES             3             153
D195V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      0    3
  STAC3 WILD-TYPE   28  141
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  NO              0              28
  YES             3             141

Clustering(196) Variable = C1ORF94 MUTATION ANALYSIS
D196V1, survival
                   sevent
clus2                0  1
  C1ORF94 MUTATED    6  2
  C1ORF94 WILD-TYPE 93 48
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
                8               141 
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
                2                48 
$`C1ORF94 MUTATED`
TCGA-05-4382 TCGA-35-4123 TCGA-44-2655 TCGA-44-2665 TCGA-49-4488 TCGA-50-5049 
       19.92         5.95        18.87        13.15        28.57        48.82 
TCGA-50-5932 TCGA-73-4666 
       35.87        20.28 

$`C1ORF94 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
       13.87         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
             5.95              0.07 
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
            48.82             85.32 
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
            20.10             12.99 
[1] "6.0 - 48.8 (20.1)" "0.1 - 85.3 (13.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6836 
"C1ORF94 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6836 
"C1ORF94 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE"   "C1ORF94 MUTATED" "C1ORF94 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-91-6836 
"C1ORF94 WILD-TYPE" 
[1] "hr=" "1.5"
D196V2, continuous
D196V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF94 MUTATED      4    4
  C1ORF94 WILD-TYPE   89   75
        clus
vv       C1ORF94 MUTATED C1ORF94 WILD-TYPE
  FEMALE               4                89
  MALE                 4                75
D196V4, continuous
[1] "Remove cluster labels:" "C1ORF94 MUTATED"       
clus
  C1ORF94 MUTATED C1ORF94 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"C1ORF94 WILD-TYPE" "C1ORF94 WILD-TYPE" 
D196V5, multiclass
D196V6, multiclass
    clus
vv   C1ORF94 MUTATED C1ORF94 WILD-TYPE
  T1               4                37
  T2               4               104
  T3               0                14
  T4               0                 8
D196V7, multiclass
       clus
vv      C1ORF94 MUTATED C1ORF94 WILD-TYPE
  N0                  6                89
  N1                  2                35
  N2+N3               0                35
D196V8, multiclass
    clus
vv   C1ORF94 MUTATED C1ORF94 WILD-TYPE
  M0               6               131
  M1               1                 8
  MX               1                21
D196V9, multiclass
     clus
vv    C1ORF94 MUTATED C1ORF94 WILD-TYPE
  I                 5                83
  II                2                31
  III               0                39
  IV                1                 8
D196V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF94 MUTATED      2    6
  C1ORF94 WILD-TYPE   14  150
     clus
vv    C1ORF94 MUTATED C1ORF94 WILD-TYPE
  NO                2                14
  YES               6               150
D196V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF94 MUTATED      2    6
  C1ORF94 WILD-TYPE   26  138
     clus
vv    C1ORF94 MUTATED C1ORF94 WILD-TYPE
  NO                2                26
  YES               6               138

Clustering(197) Variable = PDZRN4 MUTATION ANALYSIS
D197V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    4  3
  PDZRN4 WILD-TYPE 95 47
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               7              142 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               3               47 
$`PDZRN4 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-5715 TCGA-38-4628 TCGA-49-6744 TCGA-50-6590 
        9.96        47.05         2.04        49.02        12.99        42.31 
TCGA-55-1596 
       45.17 

$`PDZRN4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.13         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            2.04             0.07 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           49.02            85.32 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           42.31            13.51 
[1] "2.0 - 49.0 (42.3)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-91-6836 
"PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D197V2, continuous
D197V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      6    2
  PDZRN4 WILD-TYPE   87   77
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              6               87
  MALE                2               77
D197V4, continuous
D197V5, multiclass
D197V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              0               41
  T2              5              103
  T3              1               13
  T4              2                6
D197V7, multiclass
       clus
vv      PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0                 2               93
  N1                 4               33
  N2+N3              2               33
D197V8, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              7              130
  M1              0                9
  MX              1               21
D197V9, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                2               86
  II               3               30
  III              3               36
  IV               0                9
D197V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      0    8
  PDZRN4 WILD-TYPE   16  148
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  NO               0               16
  YES              8              148
D197V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      1    7
  PDZRN4 WILD-TYPE   27  137
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  NO               1               27
  YES              7              137

Clustering(198) Variable = HOXB3 MUTATION ANALYSIS
D198V1, survival
                 sevent
clus2              0  1
  HOXB3 MUTATED    7  2
  HOXB3 WILD-TYPE 92 48
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              9             140 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              2              48 
$`HOXB3 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-49-6742 TCGA-50-5933 TCGA-55-1594 
       19.92        29.95        25.02        15.02        77.88        38.73 
TCGA-64-5778 TCGA-64-5779 TCGA-73-4677 
       30.44        16.67         1.25 

$`HOXB3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        0.46         1.32         4.01         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  HOXB3 MUTATED HOXB3 WILD-TYPE 
           1.25            0.07 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
          77.88           85.32 
  HOXB3 MUTATED HOXB3 WILD-TYPE 
         25.020          12.825 
[1] "1.2 - 77.9 (25.0)" "0.1 - 85.3 (12.8)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"HOXB3 WILD-TYPE"   "HOXB3 MUTATED" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED"   "HOXB3 MUTATED" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE"   "HOXB3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-91-6836 
"HOXB3 WILD-TYPE" 
[1] "hr=" "2.6"
D198V2, continuous
D198V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      0   10
  HOXB3 WILD-TYPE   93   69
        clus
vv       HOXB3 MUTATED HOXB3 WILD-TYPE
  FEMALE             0              93
  MALE              10              69
D198V4, continuous
[1] "Remove cluster labels:" "HOXB3 MUTATED"         
clus
  HOXB3 MUTATED HOXB3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" "HOXB3 WILD-TYPE" 
D198V5, multiclass
D198V6, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  T1             0              41
  T2             8             100
  T3             1              13
  T4             1               7
D198V7, multiclass
       clus
vv      HOXB3 MUTATED HOXB3 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             3              32
D198V8, multiclass
    clus
vv   HOXB3 MUTATED HOXB3 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             1              21
D198V9, multiclass
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  I               5              83
  II              2              31
  III             3              36
  IV              0               9
D198V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      1    9
  HOXB3 WILD-TYPE   15  147
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  NO              1              15
  YES             9             147
D198V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXB3 MUTATED      2    8
  HOXB3 WILD-TYPE   26  136
     clus
vv    HOXB3 MUTATED HOXB3 WILD-TYPE
  NO              2              26
  YES             8             136

Clustering(199) Variable = CYP2C19 MUTATION ANALYSIS
D199V1, survival
                   sevent
clus2                0  1
  CYP2C19 MUTATED    4  3
  CYP2C19 WILD-TYPE 95 47
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                7               142 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                3                47 
$`CYP2C19 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-35-4122 TCGA-49-4487 TCGA-49-6743 TCGA-64-5781 
        9.96        25.02         7.36        28.11        12.13        39.52 
TCGA-91-6829 
       41.33 

$`CYP2C19 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        83.84         0.10        30.44        16.67         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22         1.28         1.15         0.36 

  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
             7.36              0.07 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
            41.33             85.32 
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
            25.02             13.51 
[1] "7.4 - 41.3 (25.0)" "0.1 - 85.3 (13.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CYP2C19 WILD-TYPE"   "CYP2C19 MUTATED" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-91-6836 
"CYP2C19 WILD-TYPE" 
[1] "hr=" "1.2"
D199V2, continuous
D199V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP2C19 MUTATED      4    3
  CYP2C19 WILD-TYPE   89   76
        clus
vv       CYP2C19 MUTATED CYP2C19 WILD-TYPE
  FEMALE               4                89
  MALE                 3                76
D199V4, continuous
[1] "Remove cluster labels:" "CYP2C19 MUTATED"       
clus
  CYP2C19 MUTATED CYP2C19 WILD-TYPE 
                1                11 
       TCGA-35-4123        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" "CYP2C19 WILD-TYPE" 
D199V5, multiclass
D199V6, multiclass
    clus
vv   CYP2C19 MUTATED CYP2C19 WILD-TYPE
  T1               3                38
  T2               3               105
  T3               0                14
  T4               1                 7
D199V7, multiclass
       clus
vv      CYP2C19 MUTATED CYP2C19 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               1                34
D199V8, multiclass
    clus
vv   CYP2C19 MUTATED CYP2C19 WILD-TYPE
  M0               5               132
  M1               0                 9
  MX               2                20
D199V9, multiclass
     clus
vv    CYP2C19 MUTATED CYP2C19 WILD-TYPE
  I                 5                83
  II                0                33
  III               2                37
  IV                0                 9
D199V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP2C19 MUTATED      0    7
  CYP2C19 WILD-TYPE   16  149
     clus
vv    CYP2C19 MUTATED CYP2C19 WILD-TYPE
  NO                0                16
  YES               7               149
D199V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP2C19 MUTATED      1    6
  CYP2C19 WILD-TYPE   27  138
     clus
vv    CYP2C19 MUTATED CYP2C19 WILD-TYPE
  NO                1                27
  YES               6               138

Clustering(200) Variable = RBM19 MUTATION ANALYSIS
D200V1, survival
                 sevent
clus2              0  1
  RBM19 MUTATED    6  5
  RBM19 WILD-TYPE 93 45
  RBM19 MUTATED RBM19 WILD-TYPE 
             11             138 
  RBM19 MUTATED RBM19 WILD-TYPE 
              5              45 
$`RBM19 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-05-4424 TCGA-44-6777 TCGA-49-4488 
        9.96        24.03        14.93        30.02        32.45        28.57 
TCGA-49-6742 TCGA-50-5049 TCGA-67-3771 TCGA-73-4658 TCGA-91-6836 
       15.02        48.82         1.97        52.57         0.36 

$`RBM19 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05         2.96         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 

  RBM19 MUTATED RBM19 WILD-TYPE 
           0.36            0.07 
  RBM19 MUTATED RBM19 WILD-TYPE 
          52.57           85.32 
  RBM19 MUTATED RBM19 WILD-TYPE 
          24.03           13.07 
[1] "0.4 - 52.6 (24.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RBM19 WILD-TYPE"   "RBM19 MUTATED"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" "RBM19 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "RBM19 MUTATED" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE"   "RBM19 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" "RBM19 WILD-TYPE" 
     TCGA-91-6836 
  "RBM19 MUTATED" 
[1] "hr=" "1.1"
D200V2, continuous
D200V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM19 MUTATED      6    8
  RBM19 WILD-TYPE   87   71
        clus
vv       RBM19 MUTATED RBM19 WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D200V4, continuous
D200V5, multiclass
D200V6, multiclass
    clus
vv   RBM19 MUTATED RBM19 WILD-TYPE
  T1             4              37
  T2             8             100
  T3             1              13
  T4             1               7
D200V7, multiclass
       clus
vv      RBM19 MUTATED RBM19 WILD-TYPE
  N0                9              86
  N1                4              33
  N2+N3             0              35
D200V8, multiclass
    clus
vv   RBM19 MUTATED RBM19 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             4              18
D200V9, multiclass
     clus
vv    RBM19 MUTATED RBM19 WILD-TYPE
  I               9              79
  II              4              29
  III             1              38
  IV              0               9
D200V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM19 MUTATED      2   12
  RBM19 WILD-TYPE   14  144
     clus
vv    RBM19 MUTATED RBM19 WILD-TYPE
  NO              2              14
  YES            12             144
D200V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM19 MUTATED      1   13
  RBM19 WILD-TYPE   27  131
     clus
vv    RBM19 MUTATED RBM19 WILD-TYPE
  NO              1              27
  YES            13             131

Clustering(201) Variable = OR5K3 MUTATION ANALYSIS
D201V1, survival
                 sevent
clus2              0  1
  OR5K3 MUTATED    6  1
  OR5K3 WILD-TYPE 93 49
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              7             142 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
              1              49 
$`OR5K3 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-44-6145 TCGA-49-4514 TCGA-50-5049 
       24.03        19.10         6.44         3.35        43.20        48.82 
TCGA-91-6828 
        1.22 

$`OR5K3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        18.87        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR5K3 MUTATED OR5K3 WILD-TYPE 
           1.22            0.07 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          48.82           85.32 
  OR5K3 MUTATED OR5K3 WILD-TYPE 
          19.10           13.51 
[1] "1.2 - 48.8 (19.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5K3 WILD-TYPE"   "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR5K3 MUTATED" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" "OR5K3 WILD-TYPE" 
     TCGA-91-6836 
"OR5K3 WILD-TYPE" 
[1] "hr=" "2.5"
D201V2, continuous
D201V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      3    4
  OR5K3 WILD-TYPE   90   75
        clus
vv       OR5K3 MUTATED OR5K3 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D201V4, continuous
D201V5, multiclass
D201V6, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  T1             4              37
  T2             3             105
  T3             0              14
  T4             0               8
D201V7, multiclass
       clus
vv      OR5K3 MUTATED OR5K3 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             0              35
D201V8, multiclass
    clus
vv   OR5K3 MUTATED OR5K3 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             1              21
D201V9, multiclass
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  I               6              82
  II              1              32
  III             0              39
  IV              0               9
D201V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      1    6
  OR5K3 WILD-TYPE   15  150
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  NO              1              15
  YES             6             150
D201V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K3 MUTATED      0    7
  OR5K3 WILD-TYPE   28  137
     clus
vv    OR5K3 MUTATED OR5K3 WILD-TYPE
  NO              0              28
  YES             7             137

Clustering(202) Variable = SAMD7 MUTATION ANALYSIS
D202V1, survival
                 sevent
clus2              0  1
  SAMD7 MUTATED    4  1
  SAMD7 WILD-TYPE 95 49
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              5             144 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              49 
$`SAMD7 MUTATED`
TCGA-05-4390 TCGA-05-5425 TCGA-35-5375 TCGA-49-4505 TCGA-49-6743 
       37.02         2.96         8.68        14.07        12.13 

$`SAMD7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        15.02        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SAMD7 MUTATED SAMD7 WILD-TYPE 
           2.96            0.07 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          37.02           85.32 
  SAMD7 MUTATED SAMD7 WILD-TYPE 
          12.13           13.94 
[1] "3.0 - 37.0 (12.1)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SAMD7 WILD-TYPE"   "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "SAMD7 MUTATED" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE"   "SAMD7 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-91-6836 
"SAMD7 WILD-TYPE" 
[1] "hr=" "1.1"
D202V2, continuous
D202V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      4    2
  SAMD7 WILD-TYPE   89   77
        clus
vv       SAMD7 MUTATED SAMD7 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D202V4, continuous
[1] "Remove cluster labels:" "SAMD7 MUTATED"         
clus
  SAMD7 MUTATED SAMD7 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" "SAMD7 WILD-TYPE" 
D202V5, multiclass
D202V6, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             0               8
D202V7, multiclass
       clus
vv      SAMD7 MUTATED SAMD7 WILD-TYPE
  N0                2              93
  N1                2              35
  N2+N3             2              33
D202V8, multiclass
    clus
vv   SAMD7 MUTATED SAMD7 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             1              21
D202V9, multiclass
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  I               2              86
  II              2              31
  III             2              37
  IV              0               9
D202V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      0    6
  SAMD7 WILD-TYPE   16  150
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  NO              0              16
  YES             6             150
D202V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SAMD7 MUTATED      1    5
  SAMD7 WILD-TYPE   27  139
     clus
vv    SAMD7 MUTATED SAMD7 WILD-TYPE
  NO              1              27
  YES             5             139

Clustering(203) Variable = RALYL MUTATION ANALYSIS
D203V1, survival
                 sevent
clus2              0  1
  RALYL MUTATED    2  3
  RALYL WILD-TYPE 97 47
  RALYL MUTATED RALYL WILD-TYPE 
              5             144 
  RALYL MUTATED RALYL WILD-TYPE 
              3              47 
$`RALYL MUTATED`
TCGA-05-4382 TCGA-38-4632 TCGA-44-2668 TCGA-55-1592 TCGA-91-6829 
       19.92        44.61         8.09        23.05        41.33 

$`RALYL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  RALYL MUTATED RALYL WILD-TYPE 
           8.09            0.07 
  RALYL MUTATED RALYL WILD-TYPE 
          44.61           85.32 
  RALYL MUTATED RALYL WILD-TYPE 
          23.05           13.15 
[1] "8.1 - 44.6 (23.1)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6836 
"RALYL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6836 
"RALYL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE"   "RALYL MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RALYL WILD-TYPE"   "RALYL MUTATED" "RALYL WILD-TYPE" "RALYL WILD-TYPE" 
     TCGA-91-6836 
"RALYL WILD-TYPE" 
[1] "hr=" "1.4"
D203V2, continuous
D203V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RALYL MUTATED      0    5
  RALYL WILD-TYPE   93   74
        clus
vv       RALYL MUTATED RALYL WILD-TYPE
  FEMALE             0              93
  MALE               5              74
D203V4, continuous
D203V5, multiclass
D203V6, multiclass
    clus
vv   RALYL MUTATED RALYL WILD-TYPE
  T1             0              41
  T2             5             103
  T3             0              14
  T4             0               8
D203V7, multiclass
       clus
vv      RALYL MUTATED RALYL WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             0              35
D203V8, multiclass
    clus
vv   RALYL MUTATED RALYL WILD-TYPE
  M0             3             134
  M1             1               8
  MX             1              21
D203V9, multiclass
     clus
vv    RALYL MUTATED RALYL WILD-TYPE
  I               4              84
  II              0              33
  III             0              39
  IV              1               8
D203V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RALYL MUTATED      0    5
  RALYL WILD-TYPE   16  151
     clus
vv    RALYL MUTATED RALYL WILD-TYPE
  NO              0              16
  YES             5             151
D203V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RALYL MUTATED      0    5
  RALYL WILD-TYPE   28  139
     clus
vv    RALYL MUTATED RALYL WILD-TYPE
  NO              0              28
  YES             5             139

Clustering(204) Variable = OR2T8 MUTATION ANALYSIS
D204V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    4  4
  OR2T8 WILD-TYPE 95 46
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             141 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              4              46 
$`OR2T8 MUTATED`
TCGA-05-4430 TCGA-38-4629 TCGA-44-2656 TCGA-49-4488 TCGA-49-4506 TCGA-50-5045 
       25.02        28.37        19.10        28.57        32.84        71.47 
TCGA-50-5049 TCGA-73-4668 
       48.82        15.35 

$`OR2T8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
          15.35            0.07 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          71.47           85.32 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          28.47           12.66 
[1] "15.3 - 71.5 (28.5)" "0.1 - 85.3 (12.7)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-91-6836 
"OR2T8 WILD-TYPE" 
[1] "hr=" "1.2"
D204V2, continuous
D204V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      5    3
  OR2T8 WILD-TYPE   88   76
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D204V4, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
D204V5, multiclass
D204V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             0               8
D204V7, multiclass
       clus
vv      OR2T8 MUTATED OR2T8 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             0              35
D204V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             1              21
D204V9, multiclass
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  I               5              83
  II              3              30
  III             0              39
  IV              0               9
D204V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      2    6
  OR2T8 WILD-TYPE   14  150
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              2              14
  YES             6             150
D204V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      1    7
  OR2T8 WILD-TYPE   27  137
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              1              27
  YES             7             137

Clustering(205) Variable = TYR MUTATION ANALYSIS
D205V1, survival
               sevent
clus2            0  1
  TYR MUTATED    5  3
  TYR WILD-TYPE 94 47
  TYR MUTATED TYR WILD-TYPE 
            8           141 
  TYR MUTATED TYR WILD-TYPE 
            3            47 
$`TYR MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-44-2657 TCGA-44-3918 TCGA-44-6144 TCGA-49-4514 
        9.96         8.02        13.15         6.44         0.30        43.20 
TCGA-50-6590 TCGA-64-5779 
       42.31        16.67 

$`TYR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12         9.37         4.44        12.26        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  TYR MUTATED TYR WILD-TYPE 
         0.30          0.07 
  TYR MUTATED TYR WILD-TYPE 
        43.20         85.32 
  TYR MUTATED TYR WILD-TYPE 
       11.555        14.010 
[1] "0.3 - 43.2 (11.6)" "0.1 - 85.3 (14.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
[1] "hr=" "1.4"
D205V2, continuous
D205V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      6    4
  TYR WILD-TYPE   87   75
        clus
vv       TYR MUTATED TYR WILD-TYPE
  FEMALE           6            87
  MALE             4            75
D205V4, continuous
D205V5, multiclass
D205V6, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  T1           3            38
  T2           5           103
  T3           1            13
  T4           1             7
D205V7, multiclass
       clus
vv      TYR MUTATED TYR WILD-TYPE
  N0              6            89
  N1              1            36
  N2+N3           1            34
D205V8, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  M0           8           129
  M1           1             8
  MX           1            21
D205V9, multiclass
     clus
vv    TYR MUTATED TYR WILD-TYPE
  I             6            82
  II            1            32
  III           2            37
  IV            1             8
D205V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      0   10
  TYR WILD-TYPE   16  146
     clus
vv    TYR MUTATED TYR WILD-TYPE
  NO            0            16
  YES          10           146
D205V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      1    9
  TYR WILD-TYPE   27  135
     clus
vv    TYR MUTATED TYR WILD-TYPE
  NO            1            27
  YES           9           135

Clustering(206) Variable = STX2 MUTATION ANALYSIS
D206V1, survival
                sevent
clus2             0  1
  STX2 MUTATED    3  1
  STX2 WILD-TYPE 96 49
  STX2 MUTATED STX2 WILD-TYPE 
             4            145 
  STX2 MUTATED STX2 WILD-TYPE 
             1             49 
$`STX2 MUTATED`
TCGA-05-4396 TCGA-35-4123 TCGA-44-6774 TCGA-50-5066 
        9.96         5.95         5.42         9.76 

$`STX2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  STX2 MUTATED STX2 WILD-TYPE 
          5.42           0.07 
  STX2 MUTATED STX2 WILD-TYPE 
          9.96          85.32 
  STX2 MUTATED STX2 WILD-TYPE 
         7.855         14.070 
[1] "5.4 - 10.0 (7.9)"  "0.1 - 85.3 (14.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6836 
"STX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6836 
"STX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6836 
"STX2 WILD-TYPE" 
[1] "hr=" "3"  
D206V2, continuous
D206V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  STX2 MUTATED      1    3
  STX2 WILD-TYPE   92   76
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  FEMALE            1             92
  MALE              3             76
D206V4, continuous
[1] "Remove cluster labels:" "STX2 MUTATED"          
clus
  STX2 MUTATED STX2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
D206V5, multiclass
D206V6, multiclass
    clus
vv   STX2 MUTATED STX2 WILD-TYPE
  T1            2             39
  T2            1            107
  T3            0             14
  T4            1              7
D206V7, multiclass
       clus
vv      STX2 MUTATED STX2 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            1             34
D206V8, multiclass
    clus
vv   STX2 MUTATED STX2 WILD-TYPE
  M0            4            133
  M1            0              9
  MX            0             22
D206V9, multiclass
     clus
vv    STX2 MUTATED STX2 WILD-TYPE
  I              2             86
  II             0             33
  III            2             37
  IV             0              9
D206V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  STX2 MUTATED      0    4
  STX2 WILD-TYPE   16  152
     clus
vv    STX2 MUTATED STX2 WILD-TYPE
  NO             0             16
  YES            4            152
D206V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  STX2 MUTATED      0    4
  STX2 WILD-TYPE   28  140
     clus
vv    STX2 MUTATED STX2 WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(207) Variable = CHM MUTATION ANALYSIS
D207V1, survival
               sevent
clus2            0  1
  CHM MUTATED    1  3
  CHM WILD-TYPE 98 47
  CHM MUTATED CHM WILD-TYPE 
            4           145 
  CHM MUTATED CHM WILD-TYPE 
            3            47 
$`CHM MUTATED`
TCGA-50-5931 TCGA-50-6590 TCGA-64-5775 TCGA-73-4666 
        8.78        42.31         0.10        20.28 

$`CHM WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        11.47         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        83.84        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CHM MUTATED CHM WILD-TYPE 
         0.10          0.07 
  CHM MUTATED CHM WILD-TYPE 
        42.31         85.32 
  CHM MUTATED CHM WILD-TYPE 
        14.53         13.87 
[1] "0.1 - 42.3 (14.5)" "0.1 - 85.3 (13.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE"   "CHM MUTATED" "CHM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
[1] "hr=" "2.8"
D207V2, continuous
D207V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CHM MUTATED      4    2
  CHM WILD-TYPE   89   77
        clus
vv       CHM MUTATED CHM WILD-TYPE
  FEMALE           4            89
  MALE             2            77
D207V4, continuous
[1] "Remove cluster labels:" "CHM MUTATED"           
clus
  CHM MUTATED CHM WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4662    TCGA-73-4668    TCGA-73-4676 
"CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" "CHM WILD-TYPE" 
   TCGA-75-5122 
"CHM WILD-TYPE" 
D207V5, multiclass
D207V6, multiclass
    clus
vv   CHM MUTATED CHM WILD-TYPE
  T1           1            40
  T2           4           104
  T3           0            14
  T4           1             7
D207V7, multiclass
       clus
vv      CHM MUTATED CHM WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           1            34
D207V8, multiclass
    clus
vv   CHM MUTATED CHM WILD-TYPE
  M0           4           133
  M1           2             7
  MX           0            22
D207V9, multiclass
     clus
vv    CHM MUTATED CHM WILD-TYPE
  I             2            86
  II            1            32
  III           1            38
  IV            2             7
D207V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CHM MUTATED      1    5
  CHM WILD-TYPE   15  151
     clus
vv    CHM MUTATED CHM WILD-TYPE
  NO            1            15
  YES           5           151
D207V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  CHM MUTATED      2    4
  CHM WILD-TYPE   26  140
     clus
vv    CHM MUTATED CHM WILD-TYPE
  NO            2            26
  YES           4           140

Clustering(208) Variable = DIO2 MUTATION ANALYSIS
D208V1, survival
                sevent
clus2             0  1
  DIO2 MUTATED    5  1
  DIO2 WILD-TYPE 94 49
  DIO2 MUTATED DIO2 WILD-TYPE 
             6            143 
  DIO2 MUTATED DIO2 WILD-TYPE 
             1             49 
$`DIO2 MUTATED`
TCGA-05-4382 TCGA-38-4630 TCGA-44-2656 TCGA-44-3918 TCGA-44-6776 TCGA-73-4670 
       19.92        35.28        19.10         6.44        63.72         0.46 

$`DIO2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        49.02        28.37        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
        7.76         3.12         5.42         2.70        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  DIO2 MUTATED DIO2 WILD-TYPE 
          0.46           0.07 
  DIO2 MUTATED DIO2 WILD-TYPE 
         63.72          85.32 
  DIO2 MUTATED DIO2 WILD-TYPE 
         19.51          13.15 
[1] "0.5 - 63.7 (19.5)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE"   "DIO2 MUTATED" "DIO2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
  "DIO2 MUTATED" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" "DIO2 WILD-TYPE" 
    TCGA-91-6836 
"DIO2 WILD-TYPE" 
[1] "hr=" "2.5"
D208V2, continuous
D208V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      4    2
  DIO2 WILD-TYPE   89   77
        clus
vv       DIO2 MUTATED DIO2 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D208V4, continuous
D208V5, multiclass
D208V6, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  T1            2             39
  T2            4            104
  T3            0             14
  T4            0              8
D208V7, multiclass
       clus
vv      DIO2 MUTATED DIO2 WILD-TYPE
  N0               6             89
  N1               0             37
  N2+N3            0             35
D208V8, multiclass
    clus
vv   DIO2 MUTATED DIO2 WILD-TYPE
  M0            3            134
  M1            1              8
  MX            1             21
D208V9, multiclass
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  I              5             83
  II             0             33
  III            0             39
  IV             1              8
D208V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      0    6
  DIO2 WILD-TYPE   16  150
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  NO             0             16
  YES            6            150
D208V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DIO2 MUTATED      1    5
  DIO2 WILD-TYPE   27  139
     clus
vv    DIO2 MUTATED DIO2 WILD-TYPE
  NO             1             27
  YES            5            139

Clustering(209) Variable = NELL1 MUTATION ANALYSIS
D209V1, survival
                 sevent
clus2              0  1
  NELL1 MUTATED   10  2
  NELL1 WILD-TYPE 89 48
  NELL1 MUTATED NELL1 WILD-TYPE 
             12             137 
  NELL1 MUTATED NELL1 WILD-TYPE 
              2              48 
$`NELL1 MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-38-4626 TCGA-38-4632 TCGA-44-4112 TCGA-50-5066 
       38.07        37.02        85.32        44.61         4.60         9.76 
TCGA-50-5941 TCGA-50-6594 TCGA-55-1596 TCGA-64-1676 TCGA-67-6217 TCGA-73-4670 
        9.37        12.16        45.17        56.81        13.87         0.46 

$`NELL1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       48.62         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  NELL1 MUTATED NELL1 WILD-TYPE 
           0.46            0.07 
  NELL1 MUTATED NELL1 WILD-TYPE 
          85.32           83.84 
  NELL1 MUTATED NELL1 WILD-TYPE 
         25.445          13.150 
[1] "0.5 - 85.3 (25.4)" "0.1 - 83.8 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE"   "NELL1 MUTATED" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NELL1 WILD-TYPE"   "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "NELL1 MUTATED" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" "NELL1 WILD-TYPE" 
     TCGA-91-6836 
"NELL1 WILD-TYPE" 
[1] "hr=" "4"  
D209V2, continuous
D209V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      8    6
  NELL1 WILD-TYPE   85   73
        clus
vv       NELL1 MUTATED NELL1 WILD-TYPE
  FEMALE             8              85
  MALE               6              73
D209V4, continuous
D209V5, multiclass
D209V6, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  T1             1              40
  T2            12              96
  T3             1              13
  T4             0               8
D209V7, multiclass
       clus
vv      NELL1 MUTATED NELL1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             2              33
D209V8, multiclass
    clus
vv   NELL1 MUTATED NELL1 WILD-TYPE
  M0            12             125
  M1             2               7
  MX             0              22
D209V9, multiclass
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  I               7              81
  II              3              30
  III             2              37
  IV              2               7
D209V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      0   14
  NELL1 WILD-TYPE   16  142
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  NO              0              16
  YES            14             142
D209V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NELL1 MUTATED      2   12
  NELL1 WILD-TYPE   26  132
     clus
vv    NELL1 MUTATED NELL1 WILD-TYPE
  NO              2              26
  YES            12             132

Clustering(210) Variable = OR2M4 MUTATION ANALYSIS
D210V1, survival
                 sevent
clus2              0  1
  OR2M4 MUTATED    8  3
  OR2M4 WILD-TYPE 91 47
  OR2M4 MUTATED OR2M4 WILD-TYPE 
             11             138 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              3              47 
$`OR2M4 MUTATED`
TCGA-05-4432 TCGA-35-4122 TCGA-44-2662 TCGA-44-6147 TCGA-49-6742 TCGA-50-6590 
       25.02         7.36        15.78         7.76        15.02        42.31 
TCGA-64-1677 TCGA-64-5781 TCGA-73-4662 TCGA-73-4666 TCGA-73-4677 
       20.65        39.52        29.95        20.28         1.25 

$`OR2M4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.75        43.20        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        15.35         0.46         1.32 
TCGA-73-4676 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.22        41.33         1.28         1.15         0.36 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           1.25            0.07 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          42.31           85.32 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.28           13.07 
[1] "1.2 - 42.3 (20.3)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" "OR2M4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-91-6836 
"OR2M4 WILD-TYPE" 
[1] "hr=" "1.1"
D210V2, continuous
D210V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      6    5
  OR2M4 WILD-TYPE   87   74
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             6              87
  MALE               5              74
D210V4, continuous
D210V5, multiclass
D210V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             4              37
  T2             7             101
  T3             0              14
  T4             0               8
D210V7, multiclass
       clus
vv      OR2M4 MUTATED OR2M4 WILD-TYPE
  N0                7              88
  N1                2              35
  N2+N3             1              34
D210V8, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  M0             9             128
  M1             1               8
  MX             1              21
D210V9, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               7              81
  II              2              31
  III             1              38
  IV              1               8
D210V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      2    9
  OR2M4 WILD-TYPE   14  147
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  NO              2              14
  YES             9             147
D210V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      4    7
  OR2M4 WILD-TYPE   24  137
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  NO              4              24
  YES             7             137

Clustering(211) Variable = TMEM185A MUTATION ANALYSIS
D211V1, survival
                    sevent
clus2                 0  1
  TMEM185A MUTATED    1  2
  TMEM185A WILD-TYPE 98 48
  TMEM185A MUTATED TMEM185A WILD-TYPE 
                 3                146 
  TMEM185A MUTATED TMEM185A WILD-TYPE 
                 2                 48 
$`TMEM185A MUTATED`
TCGA-05-4402 TCGA-05-4427 TCGA-50-5931 
        8.02        26.01         8.78 

$`TMEM185A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81         9.76        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  TMEM185A MUTATED TMEM185A WILD-TYPE 
              8.02               0.07 
  TMEM185A MUTATED TMEM185A WILD-TYPE 
             26.01              85.32 
  TMEM185A MUTATED TMEM185A WILD-TYPE 
              8.78              13.94 
[1] "8.0 - 26.0 (8.8)"  "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE"   "TMEM185A MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE"   "TMEM185A MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE"   "TMEM185A MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TMEM185A WILD-TYPE"   "TMEM185A MUTATED" "TMEM185A WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
[1] "hr=" "4"  
D211V2, continuous
D211V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM185A MUTATED      3    0
  TMEM185A WILD-TYPE   90   79
        clus
vv       TMEM185A MUTATED TMEM185A WILD-TYPE
  FEMALE                3                 90
  MALE                  0                 79
D211V4, continuous
D211V5, multiclass
D211V6, multiclass
    clus
vv   TMEM185A MUTATED TMEM185A WILD-TYPE
  T1                0                 41
  T2                3                105
  T3                0                 14
  T4                0                  8
D211V7, multiclass
[1] "Remove cluster labels:" "TMEM185A MUTATED"      
clus
  TMEM185A MUTATED TMEM185A WILD-TYPE 
                 2                165 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4382         TCGA-05-4384         TCGA-05-4389 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4390         TCGA-05-4395         TCGA-05-4396 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4403 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4418         TCGA-05-4420 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4422         TCGA-05-4424         TCGA-05-4425 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4430         TCGA-05-4432 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-4433         TCGA-05-4434         TCGA-05-5420 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2659 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-6144 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6148 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-49-6767         TCGA-50-5044         TCGA-50-5045 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5932         TCGA-50-5933 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-3774         TCGA-67-4679         TCGA-67-6215 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-75-5122         TCGA-75-5125         TCGA-75-5126 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-75-5146         TCGA-75-5147         TCGA-75-6203 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-75-6205         TCGA-75-6206         TCGA-75-6207 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-75-6211         TCGA-75-6212         TCGA-80-5611 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-86-6562         TCGA-91-6828         TCGA-91-6829 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" "TMEM185A WILD-TYPE" 
D211V8, multiclass
    clus
vv   TMEM185A MUTATED TMEM185A WILD-TYPE
  M0                2                135
  M1                1                  8
  MX                0                 22
D211V9, multiclass
     clus
vv    TMEM185A MUTATED TMEM185A WILD-TYPE
  I                  1                 87
  II                 1                 32
  III                0                 39
  IV                 1                  8
D211V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM185A MUTATED      0    3
  TMEM185A WILD-TYPE   16  153
     clus
vv    TMEM185A MUTATED TMEM185A WILD-TYPE
  NO                 0                 16
  YES                3                153
D211V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM185A MUTATED      0    3
  TMEM185A WILD-TYPE   28  141
     clus
vv    TMEM185A MUTATED TMEM185A WILD-TYPE
  NO                 0                 28
  YES                3                141

Clustering(212) Variable = GSG1L MUTATION ANALYSIS
D212V1, survival
                 sevent
clus2              0  1
  GSG1L MUTATED    3  1
  GSG1L WILD-TYPE 96 49
  GSG1L MUTATED GSG1L WILD-TYPE 
              4             145 
  GSG1L MUTATED GSG1L WILD-TYPE 
              1              49 
$`GSG1L MUTATED`
TCGA-35-4122 TCGA-38-4632 TCGA-44-6774 TCGA-91-6835 
        7.36        44.61         5.42         1.15 

$`GSG1L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6836 
        0.36 

  GSG1L MUTATED GSG1L WILD-TYPE 
           1.15            0.07 
  GSG1L MUTATED GSG1L WILD-TYPE 
          44.61           85.32 
  GSG1L MUTATED GSG1L WILD-TYPE 
           6.39           14.01 
[1] "1.1 - 44.6 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GSG1L WILD-TYPE"   "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-91-6836 
"GSG1L WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GSG1L WILD-TYPE"   "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-91-6836 
"GSG1L WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GSG1L WILD-TYPE"   "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "GSG1L MUTATED" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE"   "GSG1L MUTATED" 
     TCGA-91-6836 
"GSG1L WILD-TYPE" 
[1] "hr=" "1"  
D212V2, continuous
D212V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSG1L MUTATED      2    2
  GSG1L WILD-TYPE   91   77
        clus
vv       GSG1L MUTATED GSG1L WILD-TYPE
  FEMALE             2              91
  MALE               2              77
D212V4, continuous
[1] "Remove cluster labels:" "GSG1L MUTATED"         
clus
  GSG1L MUTATED GSG1L WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"GSG1L WILD-TYPE" "GSG1L WILD-TYPE" "GSG1L WILD-TYPE" 
D212V5, multiclass
D212V6, multiclass
    clus
vv   GSG1L MUTATED GSG1L WILD-TYPE
  T1             3              38
  T2             1             107
  T3             0              14
  T4             0               8
D212V7, multiclass
       clus
vv      GSG1L MUTATED GSG1L WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             1              34
D212V8, multiclass
    clus
vv   GSG1L MUTATED GSG1L WILD-TYPE
  M0             2             135
  M1             1               8
  MX             1              21
D212V9, multiclass
     clus
vv    GSG1L MUTATED GSG1L WILD-TYPE
  I               2              86
  II              0              33
  III             1              38
  IV              1               8
D212V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSG1L MUTATED      0    4
  GSG1L WILD-TYPE   16  152
     clus
vv    GSG1L MUTATED GSG1L WILD-TYPE
  NO              0              16
  YES             4             152
D212V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GSG1L MUTATED      0    4
  GSG1L WILD-TYPE   28  140
     clus
vv    GSG1L MUTATED GSG1L WILD-TYPE
  NO              0              28
  YES             4             140

Clustering(213) Variable = NOVA1 MUTATION ANALYSIS
D213V1, survival
                 sevent
clus2              0  1
  NOVA1 MUTATED    4  5
  NOVA1 WILD-TYPE 95 45
  NOVA1 MUTATED NOVA1 WILD-TYPE 
              9             140 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
              5              45 
$`NOVA1 MUTATED`
TCGA-05-4398 TCGA-38-4631 TCGA-44-2657 TCGA-50-5933 TCGA-50-6590 TCGA-50-6594 
       47.05        11.64        13.15        77.88        42.31        12.16 
TCGA-64-5781 TCGA-67-3771 TCGA-91-6829 
       39.52         1.97        41.33 

$`NOVA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        19.10        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  NOVA1 MUTATED NOVA1 WILD-TYPE 
           1.97            0.07 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
          77.88           85.32 
  NOVA1 MUTATED NOVA1 WILD-TYPE 
          39.52           13.51 
[1] "2.0 - 77.9 (39.5)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE"   "NOVA1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NOVA1 WILD-TYPE"   "NOVA1 MUTATED" "NOVA1 WILD-TYPE" "NOVA1 WILD-TYPE" 
     TCGA-91-6836 
"NOVA1 WILD-TYPE" 
[1] "hr=" "1.2"
D213V2, continuous
D213V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOVA1 MUTATED      7    3
  NOVA1 WILD-TYPE   86   76
        clus
vv       NOVA1 MUTATED NOVA1 WILD-TYPE
  FEMALE             7              86
  MALE               3              76
D213V4, continuous
D213V5, multiclass
D213V6, multiclass
    clus
vv   NOVA1 MUTATED NOVA1 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             1              13
  T4             2               6
D213V7, multiclass
       clus
vv      NOVA1 MUTATED NOVA1 WILD-TYPE
  N0                6              89
  N1                0              37
  N2+N3             3              32
D213V8, multiclass
    clus
vv   NOVA1 MUTATED NOVA1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             1              21
D213V9, multiclass
     clus
vv    NOVA1 MUTATED NOVA1 WILD-TYPE
  I               7              81
  II              0              33
  III             3              36
  IV              0               9
D213V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOVA1 MUTATED      1    9
  NOVA1 WILD-TYPE   15  147
     clus
vv    NOVA1 MUTATED NOVA1 WILD-TYPE
  NO              1              15
  YES             9             147
D213V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NOVA1 MUTATED      0   10
  NOVA1 WILD-TYPE   28  134
     clus
vv    NOVA1 MUTATED NOVA1 WILD-TYPE
  NO              0              28
  YES            10             134

Clustering(214) Variable = PDE10A MUTATION ANALYSIS
D214V1, survival
                  sevent
clus2               0  1
  PDE10A MUTATED    9  1
  PDE10A WILD-TYPE 90 49
  PDE10A MUTATED PDE10A WILD-TYPE 
              10              139 
  PDE10A MUTATED PDE10A WILD-TYPE 
               1               49 
$`PDE10A MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4424 TCGA-05-5423 TCGA-35-4123 TCGA-38-4626 
        9.96        20.05        30.02         4.96         5.95        85.32 
TCGA-44-2668 TCGA-49-4514 TCGA-50-5049 TCGA-64-1678 
        8.09        43.20        48.82        39.09 

$`PDE10A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        1.02         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        47.61        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  PDE10A MUTATED PDE10A WILD-TYPE 
            4.96             0.07 
  PDE10A MUTATED PDE10A WILD-TYPE 
           85.32            83.84 
  PDE10A MUTATED PDE10A WILD-TYPE 
          25.035           13.150 
[1] "5.0 - 85.3 (25.0)" "0.1 - 83.8 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6836 
"PDE10A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6836 
"PDE10A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "PDE10A MUTATED" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE"   "PDE10A MUTATED" "PDE10A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-91-6836 
"PDE10A WILD-TYPE" 
[1] "hr=" "6.1"
D214V2, continuous
D214V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDE10A MUTATED      4    8
  PDE10A WILD-TYPE   89   71
        clus
vv       PDE10A MUTATED PDE10A WILD-TYPE
  FEMALE              4               89
  MALE                8               71
D214V4, continuous
[1] "Remove cluster labels:" "PDE10A MUTATED"        
clus
  PDE10A MUTATED PDE10A WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PDE10A WILD-TYPE" "PDE10A WILD-TYPE" "PDE10A WILD-TYPE" 
D214V5, multiclass
D214V6, multiclass
    clus
vv   PDE10A MUTATED PDE10A WILD-TYPE
  T1              2               39
  T2              6              102
  T3              2               12
  T4              2                6
D214V7, multiclass
       clus
vv      PDE10A MUTATED PDE10A WILD-TYPE
  N0                 9               86
  N1                 2               35
  N2+N3              1               34
D214V8, multiclass
    clus
vv   PDE10A MUTATED PDE10A WILD-TYPE
  M0             12              125
  M1              0                9
  MX              0               22
D214V9, multiclass
     clus
vv    PDE10A MUTATED PDE10A WILD-TYPE
  I                6               82
  II               4               29
  III              2               37
  IV               0                9
D214V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDE10A MUTATED      1   11
  PDE10A WILD-TYPE   15  145
     clus
vv    PDE10A MUTATED PDE10A WILD-TYPE
  NO               1               15
  YES             11              145
D214V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDE10A MUTATED      1   11
  PDE10A WILD-TYPE   27  133
     clus
vv    PDE10A MUTATED PDE10A WILD-TYPE
  NO               1               27
  YES             11              133

Clustering(215) Variable = GLIPR1 MUTATION ANALYSIS
D215V1, survival
                  sevent
clus2               0  1
  GLIPR1 MUTATED    2  3
  GLIPR1 WILD-TYPE 97 47
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               5              144 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
               3               47 
$`GLIPR1 MUTATED`
TCGA-05-4396 TCGA-44-6145 TCGA-49-4505 TCGA-49-4512 TCGA-64-5815 
        9.96         3.35        14.07        29.75         7.33 

$`GLIPR1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
            3.35             0.07 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
           29.75            85.32 
  GLIPR1 MUTATED GLIPR1 WILD-TYPE 
            9.96            13.94 
[1] "3.4 - 29.8 (10.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
  "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GLIPR1 WILD-TYPE"   "GLIPR1 MUTATED" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" "GLIPR1 WILD-TYPE" 
      TCGA-91-6836 
"GLIPR1 WILD-TYPE" 
[1] "hr=" "3.6"
D215V2, continuous
D215V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLIPR1 MUTATED      3    3
  GLIPR1 WILD-TYPE   90   76
        clus
vv       GLIPR1 MUTATED GLIPR1 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D215V4, continuous
D215V5, multiclass
D215V6, multiclass
    clus
vv   GLIPR1 MUTATED GLIPR1 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              0               14
  T4              1                7
D215V7, multiclass
       clus
vv      GLIPR1 MUTATED GLIPR1 WILD-TYPE
  N0                 1               94
  N1                 3               34
  N2+N3              2               33
D215V8, multiclass
    clus
vv   GLIPR1 MUTATED GLIPR1 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
D215V9, multiclass
     clus
vv    GLIPR1 MUTATED GLIPR1 WILD-TYPE
  I                1               87
  II               2               31
  III              2               37
  IV               1                8
D215V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLIPR1 MUTATED      0    6
  GLIPR1 WILD-TYPE   16  150
     clus
vv    GLIPR1 MUTATED GLIPR1 WILD-TYPE
  NO               0               16
  YES              6              150
D215V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GLIPR1 MUTATED      2    4
  GLIPR1 WILD-TYPE   26  140
     clus
vv    GLIPR1 MUTATED GLIPR1 WILD-TYPE
  NO               2               26
  YES              4              140

Clustering(216) Variable = GNG2 MUTATION ANALYSIS
D216V1, survival
                sevent
clus2             0  1
  GNG2 MUTATED    2  2
  GNG2 WILD-TYPE 97 48
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            145 
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             48 
$`GNG2 MUTATED`
TCGA-05-5425 TCGA-38-4631 TCGA-49-4514 TCGA-55-1592 
        2.96        11.64        43.20        23.05 

$`GNG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  GNG2 MUTATED GNG2 WILD-TYPE 
          2.96           0.07 
  GNG2 MUTATED GNG2 WILD-TYPE 
         43.20          85.32 
  GNG2 MUTATED GNG2 WILD-TYPE 
        17.345         13.870 
[1] "3.0 - 43.2 (17.3)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6836 
"GNG2 WILD-TYPE" 
[1] "hr=" "1.6"
D216V2, continuous
D216V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      2    2
  GNG2 WILD-TYPE   91   77
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D216V4, continuous
D216V5, multiclass
D216V6, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  T1            1             40
  T2            3            105
  T3            0             14
  T4            0              8
D216V7, multiclass
       clus
vv      GNG2 MUTATED GNG2 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            0             35
D216V8, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  M0            4            133
  M1            0              9
  MX            0             22
D216V9, multiclass
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  I              3             85
  II             1             32
  III            0             39
  IV             0              9
D216V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      0    4
  GNG2 WILD-TYPE   16  152
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  NO             0             16
  YES            4            152
D216V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      0    4
  GNG2 WILD-TYPE   28  140
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(217) Variable = PIP MUTATION ANALYSIS
D217V1, survival
               sevent
clus2            0  1
  PIP MUTATED    1  2
  PIP WILD-TYPE 98 48
  PIP MUTATED PIP WILD-TYPE 
            3           146 
  PIP MUTATED PIP WILD-TYPE 
            2            48 
$`PIP MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-50-6592 
        9.96        47.05        25.51 

$`PIP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
        4.44        12.26        11.47        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PIP MUTATED PIP WILD-TYPE 
         9.96          0.07 
  PIP MUTATED PIP WILD-TYPE 
        47.05         85.32 
  PIP MUTATED PIP WILD-TYPE 
        25.51         13.51 
[1] "10.0 - 47.0 (25.5)" "0.1 - 85.3 (13.5)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "PIP MUTATED" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE"   "PIP MUTATED" "PIP WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" "PIP WILD-TYPE" 
[1] "hr=" "1.4"
D217V2, continuous
D217V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      2    3
  PIP WILD-TYPE   91   76
        clus
vv       PIP MUTATED PIP WILD-TYPE
  FEMALE           2            91
  MALE             3            76
D217V4, continuous
D217V5, multiclass
D217V6, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  T1           0            41
  T2           3           105
  T3           0            14
  T4           2             6
D217V7, multiclass
       clus
vv      PIP MUTATED PIP WILD-TYPE
  N0              3            92
  N1              1            36
  N2+N3           1            34
D217V8, multiclass
    clus
vv   PIP MUTATED PIP WILD-TYPE
  M0           5           132
  M1           0             9
  MX           0            22
D217V9, multiclass
     clus
vv    PIP MUTATED PIP WILD-TYPE
  I             3            85
  II            0            33
  III           2            37
  IV            0             9
D217V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      0    5
  PIP WILD-TYPE   16  151
     clus
vv    PIP MUTATED PIP WILD-TYPE
  NO            0            16
  YES           5           151
D217V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PIP MUTATED      0    5
  PIP WILD-TYPE   28  139
     clus
vv    PIP MUTATED PIP WILD-TYPE
  NO            0            28
  YES           5           139

Clustering(218) Variable = SLC10A2 MUTATION ANALYSIS
D218V1, survival
                   sevent
clus2                0  1
  SLC10A2 MUTATED    6  1
  SLC10A2 WILD-TYPE 93 49
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                7               142 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                49 
$`SLC10A2 MUTATED`
TCGA-05-4424 TCGA-05-4427 TCGA-44-2656 TCGA-49-6743 TCGA-55-1592 TCGA-64-5778 
       30.02        26.01        19.10        12.13        23.05        30.44 
TCGA-64-5781 
       39.52 

$`SLC10A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
        8.98        29.95        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        18.87        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        83.84         0.10        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            12.13              0.07 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            39.52             85.32 
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
            26.01             13.07 
[1] "12.1 - 39.5 (26.0)" "0.1 - 85.3 (13.1)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE"   "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "SLC10A2 MUTATED" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-91-6836 
"SLC10A2 WILD-TYPE" 
[1] "hr=" "2.9"
D218V2, continuous
D218V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      3    4
  SLC10A2 WILD-TYPE   90   75
        clus
vv       SLC10A2 MUTATED SLC10A2 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D218V4, continuous
[1] "Remove cluster labels:" "SLC10A2 MUTATED"       
clus
  SLC10A2 MUTATED SLC10A2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" "SLC10A2 WILD-TYPE" 
D218V5, multiclass
D218V6, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  T1               1                40
  T2               5               103
  T3               1                13
  T4               0                 8
D218V7, multiclass
       clus
vv      SLC10A2 MUTATED SLC10A2 WILD-TYPE
  N0                  5                90
  N1                  1                36
  N2+N3               1                34
D218V8, multiclass
    clus
vv   SLC10A2 MUTATED SLC10A2 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               1                21
D218V9, multiclass
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  I                 4                84
  II                2                31
  III               1                38
  IV                0                 9
D218V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      0    7
  SLC10A2 WILD-TYPE   16  149
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  NO                0                16
  YES               7               149
D218V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC10A2 MUTATED      1    6
  SLC10A2 WILD-TYPE   27  138
     clus
vv    SLC10A2 MUTATED SLC10A2 WILD-TYPE
  NO                1                27
  YES               6               138

Clustering(219) Variable = OR5B3 MUTATION ANALYSIS
D219V1, survival
                 sevent
clus2              0  1
  OR5B3 MUTATED    4  3
  OR5B3 WILD-TYPE 95 47
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              7             142 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              3              47 
$`OR5B3 MUTATED`
TCGA-05-4427 TCGA-35-3615 TCGA-38-4629 TCGA-38-4631 TCGA-44-2657 TCGA-73-4666 
       26.01         0.46        28.37        11.64        13.15        20.28 
TCGA-73-4677 
        1.25 

$`OR5B3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-91-6828 
       29.95        15.35         0.46         1.32         4.01         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OR5B3 MUTATED OR5B3 WILD-TYPE 
           0.46            0.07 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
          28.37           85.32 
  OR5B3 MUTATED OR5B3 WILD-TYPE 
          13.15           13.94 
[1] "0.5 - 28.4 (13.2)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" "OR5B3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE"   "OR5B3 MUTATED" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-91-6836 
"OR5B3 WILD-TYPE" 
[1] "hr=" "2.3"
D219V2, continuous
D219V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5B3 MUTATED      4    3
  OR5B3 WILD-TYPE   89   76
        clus
vv       OR5B3 MUTATED OR5B3 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D219V4, continuous
[1] "Remove cluster labels:" "OR5B3 MUTATED"         
clus
  OR5B3 MUTATED OR5B3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" "OR5B3 WILD-TYPE" 
D219V5, multiclass
D219V6, multiclass
    clus
vv   OR5B3 MUTATED OR5B3 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             1              13
  T4             0               8
D219V7, multiclass
       clus
vv      OR5B3 MUTATED OR5B3 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
D219V8, multiclass
    clus
vv   OR5B3 MUTATED OR5B3 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D219V9, multiclass
     clus
vv    OR5B3 MUTATED OR5B3 WILD-TYPE
  I               4              84
  II              2              31
  III             0              39
  IV              1               8
D219V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5B3 MUTATED      1    6
  OR5B3 WILD-TYPE   15  150
     clus
vv    OR5B3 MUTATED OR5B3 WILD-TYPE
  NO              1              15
  YES             6             150
D219V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5B3 MUTATED      1    6
  OR5B3 WILD-TYPE   27  138
     clus
vv    OR5B3 MUTATED OR5B3 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(220) Variable = MAGEL2 MUTATION ANALYSIS
D220V1, survival
                  sevent
clus2               0  1
  MAGEL2 MUTATED    5  3
  MAGEL2 WILD-TYPE 94 47
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
               8              141 
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
               3               47 
$`MAGEL2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4625 TCGA-44-2668 TCGA-50-6590 TCGA-50-6592 
       19.92         9.96        47.61         8.09        42.31        25.51 
TCGA-64-1680 TCGA-67-3773 
       37.02         2.04 

$`MAGEL2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 
       32.61         0.79        56.81        20.65        39.09        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         0.59         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
            2.04             0.07 
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
           47.61            85.32 
  MAGEL2 MUTATED MAGEL2 WILD-TYPE 
          22.715           13.150 
[1] "2.0 - 47.6 (22.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEL2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEL2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEL2 WILD-TYPE"   "MAGEL2 MUTATED" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" "MAGEL2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEL2 WILD-TYPE" 
[1] "hr=" "1.1"
D220V2, continuous
D220V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEL2 MUTATED      4    4
  MAGEL2 WILD-TYPE   89   75
        clus
vv       MAGEL2 MUTATED MAGEL2 WILD-TYPE
  FEMALE              4               89
  MALE                4               75
D220V4, continuous
D220V5, multiclass
D220V6, multiclass
    clus
vv   MAGEL2 MUTATED MAGEL2 WILD-TYPE
  T1              0               41
  T2              7              101
  T3              0               14
  T4              1                7
D220V7, multiclass
       clus
vv      MAGEL2 MUTATED MAGEL2 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D220V8, multiclass
    clus
vv   MAGEL2 MUTATED MAGEL2 WILD-TYPE
  M0              7              130
  M1              1                8
  MX              0               22
D220V9, multiclass
     clus
vv    MAGEL2 MUTATED MAGEL2 WILD-TYPE
  I                6               82
  II               0               33
  III              1               38
  IV               1                8
D220V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEL2 MUTATED      1    7
  MAGEL2 WILD-TYPE   15  149
     clus
vv    MAGEL2 MUTATED MAGEL2 WILD-TYPE
  NO               1               15
  YES              7              149
D220V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEL2 MUTATED      1    7
  MAGEL2 WILD-TYPE   27  137
     clus
vv    MAGEL2 MUTATED MAGEL2 WILD-TYPE
  NO               1               27
  YES              7              137

Clustering(221) Variable = OR5L2 MUTATION ANALYSIS
D221V1, survival
                 sevent
clus2              0  1
  OR5L2 MUTATED    9  3
  OR5L2 WILD-TYPE 90 47
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             12             137 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              3              47 
$`OR5L2 MUTATED`
TCGA-05-4250 TCGA-05-4415 TCGA-05-4427 TCGA-38-4631 TCGA-44-3398 TCGA-44-6144 
        3.98         2.96        26.01        11.64         8.32         0.30 
TCGA-44-6145 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 TCGA-67-3772 
        3.35        43.20        15.02        12.13        48.82         0.59 

$`OR5L2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        3.48         6.84         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 
       32.84         8.81        29.46        29.75        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         1.97         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR5L2 MUTATED OR5L2 WILD-TYPE 
           0.30            0.07 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          48.82           85.32 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
           9.98           14.07 
[1] "0.3 - 48.8 (10.0)" "0.1 - 85.3 (14.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5L2 WILD-TYPE"   "OR5L2 MUTATED"   "OR5L2 MUTATED"   "OR5L2 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-91-6836 
"OR5L2 WILD-TYPE" 
[1] "hr=" "1.1"
D221V2, continuous
D221V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      9    4
  OR5L2 WILD-TYPE   84   75
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  FEMALE             9              84
  MALE               4              75
D221V4, continuous
D221V5, multiclass
D221V6, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  T1             5              36
  T2             5             103
  T3             2              12
  T4             1               7
D221V7, multiclass
       clus
vv      OR5L2 MUTATED OR5L2 WILD-TYPE
  N0                7              88
  N1                3              34
  N2+N3             3              32
D221V8, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  M0            11             126
  M1             0               9
  MX             2              20
D221V9, multiclass
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  I               7              81
  II              2              31
  III             4              35
  IV              0               9
D221V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      1   12
  OR5L2 WILD-TYPE   15  144
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              1              15
  YES            12             144
D221V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      2   11
  OR5L2 WILD-TYPE   26  133
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              2              26
  YES            11             133

Clustering(222) Variable = SLITRK4 MUTATION ANALYSIS
D222V1, survival
                   sevent
clus2                0  1
  SLITRK4 MUTATED    7  7
  SLITRK4 WILD-TYPE 92 43
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
               14               135 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                7                43 
$`SLITRK4 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-38-4625 TCGA-38-4626 TCGA-44-6777 TCGA-50-5045 
       19.92        47.05        47.61        85.32        32.45        71.47 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 
       77.88        21.47         9.37        42.31        12.16         6.21 
TCGA-67-3771 TCGA-73-4676 
        1.97         4.01 

$`SLITRK4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        9.27         8.78        35.87         8.45        15.12         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6597 
       12.26        11.47         3.88        25.51        11.05        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
       15.35         0.46         1.32         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
             1.97              0.07 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            85.32             83.84 
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
            26.96             13.15 
[1] "2.0 - 85.3 (27.0)" "0.1 - 83.8 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE"   "SLITRK4 MUTATED" "SLITRK4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-91-6836 
"SLITRK4 WILD-TYPE" 
[1] "hr=" "1.5"
D222V2, continuous
D222V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED     11    4
  SLITRK4 WILD-TYPE   82   75
        clus
vv       SLITRK4 MUTATED SLITRK4 WILD-TYPE
  FEMALE              11                82
  MALE                 4                75
D222V4, continuous
[1] "Remove cluster labels:" "SLITRK4 MUTATED"       
clus
  SLITRK4 MUTATED SLITRK4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-75-5122 
"SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" "SLITRK4 WILD-TYPE" 
D222V5, multiclass
D222V6, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  T1               2                39
  T2              10                98
  T3               1                13
  T4               2                 6
D222V7, multiclass
       clus
vv      SLITRK4 MUTATED SLITRK4 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               5                30
D222V8, multiclass
    clus
vv   SLITRK4 MUTATED SLITRK4 WILD-TYPE
  M0              14               123
  M1               0                 9
  MX               1                21
D222V9, multiclass
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  I                 8                80
  II                2                31
  III               5                34
  IV                0                 9
D222V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED      5   10
  SLITRK4 WILD-TYPE   11  146
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  NO                5                11
  YES              10               146
D222V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK4 MUTATED      1   14
  SLITRK4 WILD-TYPE   27  130
     clus
vv    SLITRK4 MUTATED SLITRK4 WILD-TYPE
  NO                1                27
  YES              14               130

Clustering(223) Variable = DBX2 MUTATION ANALYSIS
D223V1, survival
                sevent
clus2             0  1
  DBX2 MUTATED    2  2
  DBX2 WILD-TYPE 97 48
  DBX2 MUTATED DBX2 WILD-TYPE 
             4            145 
  DBX2 MUTATED DBX2 WILD-TYPE 
             2             48 
$`DBX2 MUTATED`
TCGA-05-4390 TCGA-44-6777 TCGA-55-1592 TCGA-67-3771 
       37.02        32.45        23.05         1.97 

$`DBX2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  DBX2 MUTATED DBX2 WILD-TYPE 
          1.97           0.07 
  DBX2 MUTATED DBX2 WILD-TYPE 
         37.02          85.32 
  DBX2 MUTATED DBX2 WILD-TYPE 
         27.75          13.15 
[1] "2.0 - 37.0 (27.8)" "0.1 - 85.3 (13.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "DBX2 MUTATED" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE"   "DBX2 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" "DBX2 WILD-TYPE" 
    TCGA-91-6836 
"DBX2 WILD-TYPE" 
[1] "hr=" "1.4"
D223V2, continuous
D223V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DBX2 MUTATED      3    1
  DBX2 WILD-TYPE   90   78
        clus
vv       DBX2 MUTATED DBX2 WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D223V4, continuous
D223V5, multiclass
D223V6, multiclass
    clus
vv   DBX2 MUTATED DBX2 WILD-TYPE
  T1            1             40
  T2            3            105
  T3            0             14
  T4            0              8
D223V7, multiclass
       clus
vv      DBX2 MUTATED DBX2 WILD-TYPE
  N0               3             92
  N1               0             37
  N2+N3            0             35
D223V8, multiclass
    clus
vv   DBX2 MUTATED DBX2 WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
D223V9, multiclass
     clus
vv    DBX2 MUTATED DBX2 WILD-TYPE
  I              4             84
  II             0             33
  III            0             39
  IV             0              9
D223V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DBX2 MUTATED      1    3
  DBX2 WILD-TYPE   15  153
     clus
vv    DBX2 MUTATED DBX2 WILD-TYPE
  NO             1             15
  YES            3            153
D223V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DBX2 MUTATED      0    4
  DBX2 WILD-TYPE   28  140
     clus
vv    DBX2 MUTATED DBX2 WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(224) Variable = ATXN3L MUTATION ANALYSIS
D224V1, survival
                  sevent
clus2               0  1
  ATXN3L MUTATED    1  2
  ATXN3L WILD-TYPE 98 48
  ATXN3L MUTATED ATXN3L WILD-TYPE 
               3              146 
  ATXN3L MUTATED ATXN3L WILD-TYPE 
               2               48 
$`ATXN3L MUTATED`
TCGA-05-4396 TCGA-49-4490 TCGA-64-5779 
        9.96        12.66        16.67 

$`ATXN3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ATXN3L MUTATED ATXN3L WILD-TYPE 
            9.96             0.07 
  ATXN3L MUTATED ATXN3L WILD-TYPE 
           16.67            85.32 
  ATXN3L MUTATED ATXN3L WILD-TYPE 
           12.66            13.94 
[1] "10.0 - 16.7 (12.7)" "0.1 - 85.3 (13.9)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE"   "ATXN3L MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6836 
"ATXN3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE"   "ATXN3L MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6836 
"ATXN3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ATXN3L WILD-TYPE"   "ATXN3L MUTATED" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE"   "ATXN3L MUTATED" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" "ATXN3L WILD-TYPE" 
      TCGA-91-6836 
"ATXN3L WILD-TYPE" 
[1] "hr=" "3.9"
D224V2, continuous
D224V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATXN3L MUTATED      1    2
  ATXN3L WILD-TYPE   92   77
        clus
vv       ATXN3L MUTATED ATXN3L WILD-TYPE
  FEMALE              1               92
  MALE                2               77
D224V4, continuous
D224V5, multiclass
D224V6, multiclass
    clus
vv   ATXN3L MUTATED ATXN3L WILD-TYPE
  T1              0               41
  T2              1              107
  T3              1               13
  T4              1                7
D224V7, multiclass
       clus
vv      ATXN3L MUTATED ATXN3L WILD-TYPE
  N0                 0               95
  N1                 1               36
  N2+N3              2               33
D224V8, multiclass
    clus
vv   ATXN3L MUTATED ATXN3L WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
D224V9, multiclass
     clus
vv    ATXN3L MUTATED ATXN3L WILD-TYPE
  I                0               88
  II               0               33
  III              3               36
  IV               0                9
D224V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATXN3L MUTATED      1    2
  ATXN3L WILD-TYPE   15  154
     clus
vv    ATXN3L MUTATED ATXN3L WILD-TYPE
  NO               1               15
  YES              2              154
D224V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATXN3L MUTATED      2    1
  ATXN3L WILD-TYPE   26  143
     clus
vv    ATXN3L MUTATED ATXN3L WILD-TYPE
  NO               2               26
  YES              1              143

Clustering(225) Variable = FRG1 MUTATION ANALYSIS
D225V1, survival
                sevent
clus2             0  1
  FRG1 MUTATED    3  3
  FRG1 WILD-TYPE 96 47
  FRG1 MUTATED FRG1 WILD-TYPE 
             6            143 
  FRG1 MUTATED FRG1 WILD-TYPE 
             3             47 
$`FRG1 MUTATED`
TCGA-05-4390 TCGA-44-2659 TCGA-44-6145 TCGA-50-6594 TCGA-50-6595 TCGA-73-4677 
       37.02        17.39         3.35        12.16         6.21         1.25 

$`FRG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61         5.19        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FRG1 MUTATED FRG1 WILD-TYPE 
          1.25           0.07 
  FRG1 MUTATED FRG1 WILD-TYPE 
         37.02          85.32 
  FRG1 MUTATED FRG1 WILD-TYPE 
         9.185         14.010 
[1] "1.2 - 37.0 (9.2)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "FRG1 MUTATED" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FRG1 WILD-TYPE"   "FRG1 MUTATED"   "FRG1 MUTATED" "FRG1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE"   "FRG1 MUTATED" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" "FRG1 WILD-TYPE" 
    TCGA-91-6836 
"FRG1 WILD-TYPE" 
[1] "hr=" "2.7"
D225V2, continuous
D225V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      5    1
  FRG1 WILD-TYPE   88   78
        clus
vv       FRG1 MUTATED FRG1 WILD-TYPE
  FEMALE            5             88
  MALE              1             78
D225V4, continuous
D225V5, multiclass
D225V6, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  T1            2             39
  T2            3            105
  T3            1             13
  T4            0              8
D225V7, multiclass
       clus
vv      FRG1 MUTATED FRG1 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            2             33
D225V8, multiclass
    clus
vv   FRG1 MUTATED FRG1 WILD-TYPE
  M0            6            131
  M1            0              9
  MX            0             22
D225V9, multiclass
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  I              3             85
  II             1             32
  III            2             37
  IV             0              9
D225V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      0    6
  FRG1 WILD-TYPE   16  150
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  NO             0             16
  YES            6            150
D225V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FRG1 MUTATED      1    5
  FRG1 WILD-TYPE   27  139
     clus
vv    FRG1 MUTATED FRG1 WILD-TYPE
  NO             1             27
  YES            5            139

Clustering(226) Variable = MAGEE2 MUTATION ANALYSIS
D226V1, survival
                  sevent
clus2               0  1
  MAGEE2 MUTATED    3  1
  MAGEE2 WILD-TYPE 96 49
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               4              145 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
               1               49 
$`MAGEE2 MUTATED`
TCGA-05-4382 TCGA-05-4402 TCGA-64-1678 TCGA-67-3771 
       19.92         8.02        39.09         1.97 

$`MAGEE2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
            1.97             0.07 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
           39.09            85.32 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
           13.97            13.87 
[1] "2.0 - 39.1 (14.0)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEE2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEE2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
  "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" "MAGEE2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE"   "MAGEE2 MUTATED" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" "MAGEE2 WILD-TYPE" 
      TCGA-91-6836 
"MAGEE2 WILD-TYPE" 
[1] "hr=" "1"  
D226V2, continuous
D226V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEE2 MUTATED      5    1
  MAGEE2 WILD-TYPE   88   78
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D226V4, continuous
D226V5, multiclass
D226V6, multiclass
    clus
vv   MAGEE2 MUTATED MAGEE2 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              1               13
  T4              0                8
D226V7, multiclass
       clus
vv      MAGEE2 MUTATED MAGEE2 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              0               35
D226V8, multiclass
    clus
vv   MAGEE2 MUTATED MAGEE2 WILD-TYPE
  M0              4              133
  M1              1                8
  MX              1               21
D226V9, multiclass
     clus
vv    MAGEE2 MUTATED MAGEE2 WILD-TYPE
  I                3               85
  II               2               31
  III              0               39
  IV               1                8
D226V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEE2 MUTATED      0    6
  MAGEE2 WILD-TYPE   16  150
     clus
vv    MAGEE2 MUTATED MAGEE2 WILD-TYPE
  NO               0               16
  YES              6              150
D226V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEE2 MUTATED      1    5
  MAGEE2 WILD-TYPE   27  139
     clus
vv    MAGEE2 MUTATED MAGEE2 WILD-TYPE
  NO               1               27
  YES              5              139

Clustering(227) Variable = NLGN1 MUTATION ANALYSIS
D227V1, survival
                 sevent
clus2              0  1
  NLGN1 MUTATED    7  4
  NLGN1 WILD-TYPE 92 46
  NLGN1 MUTATED NLGN1 WILD-TYPE 
             11             138 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
              4              46 
$`NLGN1 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-35-5375 TCGA-44-3918 TCGA-50-5931 
       19.92        37.02        24.03         8.68         6.44         8.78 
TCGA-55-1592 TCGA-55-1595 TCGA-64-1676 TCGA-67-3771 TCGA-73-4658 
       23.05        48.62        56.81         1.97        52.57 

$`NLGN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01         9.96        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
        0.59         0.89         0.69        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  NLGN1 MUTATED NLGN1 WILD-TYPE 
           1.97            0.07 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
          56.81           85.32 
  NLGN1 MUTATED NLGN1 WILD-TYPE 
          23.05           13.15 
[1] "2.0 - 56.8 (23.1)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" "NLGN1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "NLGN1 MUTATED" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE"   "NLGN1 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-91-6836 
"NLGN1 WILD-TYPE" 
[1] "hr=" "1.3"
D227V2, continuous
D227V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN1 MUTATED      7    8
  NLGN1 WILD-TYPE   86   71
        clus
vv       NLGN1 MUTATED NLGN1 WILD-TYPE
  FEMALE             7              86
  MALE               8              71
D227V4, continuous
[1] "Remove cluster labels:" "NLGN1 MUTATED"         
clus
  NLGN1 MUTATED NLGN1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676 
"NLGN1 WILD-TYPE" "NLGN1 WILD-TYPE" 
D227V5, multiclass
D227V6, multiclass
    clus
vv   NLGN1 MUTATED NLGN1 WILD-TYPE
  T1             4              37
  T2            10              98
  T3             1              13
  T4             0               8
D227V7, multiclass
       clus
vv      NLGN1 MUTATED NLGN1 WILD-TYPE
  N0               12              83
  N1                1              36
  N2+N3             2              33
D227V8, multiclass
    clus
vv   NLGN1 MUTATED NLGN1 WILD-TYPE
  M0            15             122
  M1             0               9
  MX             0              22
D227V9, multiclass
     clus
vv    NLGN1 MUTATED NLGN1 WILD-TYPE
  I              12              76
  II              1              32
  III             2              37
  IV              0               9
D227V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN1 MUTATED      0   15
  NLGN1 WILD-TYPE   16  141
     clus
vv    NLGN1 MUTATED NLGN1 WILD-TYPE
  NO              0              16
  YES            15             141
D227V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLGN1 MUTATED      0   15
  NLGN1 WILD-TYPE   28  129
     clus
vv    NLGN1 MUTATED NLGN1 WILD-TYPE
  NO              0              28
  YES            15             129

Clustering(228) Variable = USF2 MUTATION ANALYSIS
D228V1, survival
                sevent
clus2             0  1
  USF2 MUTATED    1  2
  USF2 WILD-TYPE 98 48
  USF2 MUTATED USF2 WILD-TYPE 
             3            146 
  USF2 MUTATED USF2 WILD-TYPE 
             2             48 
$`USF2 MUTATED`
TCGA-05-4420 TCGA-50-6592 TCGA-73-4659 
       29.95        25.51        23.38 

$`USF2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  USF2 MUTATED USF2 WILD-TYPE 
         23.38           0.07 
  USF2 MUTATED USF2 WILD-TYPE 
         29.95          85.32 
  USF2 MUTATED USF2 WILD-TYPE 
         25.51          13.15 
[1] "23.4 - 29.9 (25.5)" "0.1 - 85.3 (13.2)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"USF2 WILD-TYPE"   "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE"   "USF2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6836 
"USF2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"USF2 WILD-TYPE"   "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE"   "USF2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6836 
"USF2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"USF2 WILD-TYPE"   "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE"   "USF2 MUTATED" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "USF2 MUTATED" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-91-6836 
"USF2 WILD-TYPE" 
[1] "hr=" "1.7"
D228V2, continuous
D228V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  USF2 MUTATED      1    2
  USF2 WILD-TYPE   92   77
        clus
vv       USF2 MUTATED USF2 WILD-TYPE
  FEMALE            1             92
  MALE              2             77
D228V4, continuous
[1] "Remove cluster labels:" "USF2 MUTATED"          
clus
  USF2 MUTATED USF2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4662     TCGA-73-4666 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"USF2 WILD-TYPE" "USF2 WILD-TYPE" "USF2 WILD-TYPE" 
D228V5, multiclass
D228V6, multiclass
    clus
vv   USF2 MUTATED USF2 WILD-TYPE
  T1            0             41
  T2            3            105
  T3            0             14
  T4            0              8
D228V7, multiclass
       clus
vv      USF2 MUTATED USF2 WILD-TYPE
  N0               2             93
  N1               0             37
  N2+N3            1             34
D228V8, multiclass
    clus
vv   USF2 MUTATED USF2 WILD-TYPE
  M0            3            134
  M1            0              9
  MX            0             22
D228V9, multiclass
     clus
vv    USF2 MUTATED USF2 WILD-TYPE
  I              2             86
  II             0             33
  III            1             38
  IV             0              9
D228V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  USF2 MUTATED      0    3
  USF2 WILD-TYPE   16  153
     clus
vv    USF2 MUTATED USF2 WILD-TYPE
  NO             0             16
  YES            3            153
D228V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  USF2 MUTATED      0    3
  USF2 WILD-TYPE   28  141
     clus
vv    USF2 MUTATED USF2 WILD-TYPE
  NO             0             28
  YES            3            141

Clustering(229) Variable = CTRC MUTATION ANALYSIS
D229V1, survival
                sevent
clus2             0  1
  CTRC MUTATED    1  3
  CTRC WILD-TYPE 98 47
  CTRC MUTATED CTRC WILD-TYPE 
             4            145 
  CTRC MUTATED CTRC WILD-TYPE 
             3             47 
$`CTRC MUTATED`
TCGA-05-4396 TCGA-49-4488 TCGA-50-5045 TCGA-64-5781 
        9.96        28.57        71.47        39.52 

$`CTRC WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       12.99         4.93        20.48        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  CTRC MUTATED CTRC WILD-TYPE 
          9.96           0.07 
  CTRC MUTATED CTRC WILD-TYPE 
         71.47          85.32 
  CTRC MUTATED CTRC WILD-TYPE 
        34.045         13.150 
[1] "10.0 - 71.5 (34.0)" "0.1 - 85.3 (13.2)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6836 
"CTRC WILD-TYPE" 
[1] "hr=" "1.1"
D229V2, continuous
D229V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      3    1
  CTRC WILD-TYPE   90   78
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D229V4, continuous
D229V5, multiclass
D229V6, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  T1            1             40
  T2            2            106
  T3            0             14
  T4            1              7
D229V7, multiclass
       clus
vv      CTRC MUTATED CTRC WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            0             35
D229V8, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  M0            3            134
  M1            0              9
  MX            1             21
D229V9, multiclass
     clus
vv    CTRC MUTATED CTRC WILD-TYPE
  I              3             85
  II             0             33
  III            1             38
  IV             0              9
D229V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      1    3
  CTRC WILD-TYPE   15  153
     clus
vv    CTRC MUTATED CTRC WILD-TYPE
  NO             1             15
  YES            3            153
D229V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      0    4
  CTRC WILD-TYPE   28  140
     clus
vv    CTRC MUTATED CTRC WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(230) Variable = ASCL3 MUTATION ANALYSIS
D230V1, survival
                 sevent
clus2              0  1
  ASCL3 MUTATED    1  2
  ASCL3 WILD-TYPE 98 48
  ASCL3 MUTATED ASCL3 WILD-TYPE 
              3             146 
  ASCL3 MUTATED ASCL3 WILD-TYPE 
              2              48 
$`ASCL3 MUTATED`
TCGA-05-4382 TCGA-05-4402 TCGA-50-5939 
       19.92         8.02        15.12 

$`ASCL3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47         8.45         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ASCL3 MUTATED ASCL3 WILD-TYPE 
           8.02            0.07 
  ASCL3 MUTATED ASCL3 WILD-TYPE 
          19.92           85.32 
  ASCL3 MUTATED ASCL3 WILD-TYPE 
          15.12           13.51 
[1] "8.0 - 19.9 (15.1)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE"   "ASCL3 MUTATED" "ASCL3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6836 
"ASCL3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE"   "ASCL3 MUTATED" "ASCL3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6836 
"ASCL3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE"   "ASCL3 MUTATED" "ASCL3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
  "ASCL3 MUTATED" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6836 
"ASCL3 WILD-TYPE" 
[1] "hr=" "4.1"
D230V2, continuous
D230V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL3 MUTATED      1    2
  ASCL3 WILD-TYPE   92   77
        clus
vv       ASCL3 MUTATED ASCL3 WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D230V4, continuous
D230V5, multiclass
D230V6, multiclass
    clus
vv   ASCL3 MUTATED ASCL3 WILD-TYPE
  T1             0              41
  T2             3             105
  T3             0              14
  T4             0               8
D230V7, multiclass
[1] "Remove cluster labels:" "ASCL3 MUTATED"         
clus
  ASCL3 MUTATED ASCL3 WILD-TYPE 
              2             165 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4395      TCGA-05-4396 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4403      TCGA-05-4405 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4418 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4424      TCGA-05-4425 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4426      TCGA-05-4427      TCGA-05-4430      TCGA-05-4432 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-35-3615      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-38-4627      TCGA-38-4628 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4630      TCGA-38-4631      TCGA-38-4632 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2655      TCGA-44-2656      TCGA-44-2659 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-6144 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6148      TCGA-44-6774 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6778      TCGA-44-6779 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5941 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6543 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1676      TCGA-64-1677 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-3774      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-75-5122 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-5147 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6206      TCGA-75-6207 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" "ASCL3 WILD-TYPE" 
     TCGA-91-6836 
"ASCL3 WILD-TYPE" 
D230V8, multiclass
    clus
vv   ASCL3 MUTATED ASCL3 WILD-TYPE
  M0             2             135
  M1             1               8
  MX             0              22
D230V9, multiclass
     clus
vv    ASCL3 MUTATED ASCL3 WILD-TYPE
  I               2              86
  II              0              33
  III             0              39
  IV              1               8
D230V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL3 MUTATED      0    3
  ASCL3 WILD-TYPE   16  153
     clus
vv    ASCL3 MUTATED ASCL3 WILD-TYPE
  NO              0              16
  YES             3             153
D230V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL3 MUTATED      0    3
  ASCL3 WILD-TYPE   28  141
     clus
vv    ASCL3 MUTATED ASCL3 WILD-TYPE
  NO              0              28
  YES             3             141

Clustering(231) Variable = MLL3 MUTATION ANALYSIS
D231V1, survival
                sevent
clus2             0  1
  MLL3 MUTATED   17 14
  MLL3 WILD-TYPE 82 36
  MLL3 MUTATED MLL3 WILD-TYPE 
            31            118 
  MLL3 MUTATED MLL3 WILD-TYPE 
            14             36 
$`MLL3 MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       38.07        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 
       15.02         5.95        49.02        44.61        19.10        13.15 
TCGA-44-3396 TCGA-44-6777 TCGA-49-4506 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 
       10.22        32.45        32.84        12.99        71.47        48.82 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5939 TCGA-50-6594 TCGA-64-1677 TCGA-64-1678 
        9.27         8.78        15.12        12.16        20.65        39.09 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-6217 TCGA-71-6725 TCGA-91-6829 
       39.52         0.99         1.97        13.87         2.01        41.33 
TCGA-91-6836 
        0.36 

$`MLL3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
        3.98        19.92        37.02        47.05         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 
        2.96        14.93         8.98        29.95        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       37.71        28.37        35.28        11.64         5.19        18.87 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        2.70        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       28.57        12.66        35.54        46.72        14.07         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       29.46        29.75        43.20        15.02        12.13         4.93 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       20.48        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47         8.45         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1680 
        2.86         0.07        32.61         0.79        56.81        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 
       83.84         0.10        30.44        16.67         7.33         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-73-4658 TCGA-73-4659 
        2.04         0.59         0.89         0.69        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.25         1.22         1.28         1.15 

  MLL3 MUTATED MLL3 WILD-TYPE 
          0.36           0.07 
  MLL3 MUTATED MLL3 WILD-TYPE 
         71.47          85.32 
  MLL3 MUTATED MLL3 WILD-TYPE 
        15.120         12.195 
[1] "0.4 - 71.5 (15.1)" "0.1 - 85.3 (12.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-91-6836 
  "MLL3 MUTATED" 
[1] "hr=" "1.3"
D231V2, continuous
D231V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     20   14
  MLL3 WILD-TYPE   73   65
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  FEMALE           20             73
  MALE             14             65
D231V4, continuous
D231V5, multiclass
D231V6, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  T1            4             37
  T2           24             84
  T3            4             10
  T4            2              6
D231V7, multiclass
       clus
vv      MLL3 MUTATED MLL3 WILD-TYPE
  N0              16             79
  N1              10             27
  N2+N3            6             29
D231V8, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  M0           28            109
  M1            2              7
  MX            4             18
D231V9, multiclass
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  I             17             71
  II             8             25
  III            7             32
  IV             2              7
D231V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED      4   30
  MLL3 WILD-TYPE   12  126
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  NO             4             12
  YES           30            126
D231V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED      3   31
  MLL3 WILD-TYPE   25  113
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  NO             3             25
  YES           31            113

Clustering(232) Variable = RUFY2 MUTATION ANALYSIS
D232V1, survival
                 sevent
clus2              0  1
  RUFY2 MUTATED    3  4
  RUFY2 WILD-TYPE 96 46
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             142 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              4              46 
$`RUFY2 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-44-2668 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        9.96        11.64         8.09        32.45        36.49        16.41 
TCGA-73-4670 
        0.46 

$`RUFY2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       20.28        15.35         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  RUFY2 MUTATED RUFY2 WILD-TYPE 
           0.46            0.07 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
          36.49           85.32 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
          11.64           13.94 
[1] "0.5 - 36.5 (11.6)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
  "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6836 
"RUFY2 WILD-TYPE" 
[1] "hr=" "2.4"
D232V2, continuous
D232V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      4    3
  RUFY2 WILD-TYPE   89   76
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D232V4, continuous
D232V5, multiclass
D232V6, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             1               7
D232V7, multiclass
       clus
vv      RUFY2 MUTATED RUFY2 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             0              35
D232V8, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  M0             3             134
  M1             1               8
  MX             3              19
D232V9, multiclass
     clus
vv    RUFY2 MUTATED RUFY2 WILD-TYPE
  I               4              84
  II              1              32
  III             1              38
  IV              1               8
D232V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      1    6
  RUFY2 WILD-TYPE   15  150
     clus
vv    RUFY2 MUTATED RUFY2 WILD-TYPE
  NO              1              15
  YES             6             150
D232V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      1    6
  RUFY2 WILD-TYPE   27  138
     clus
vv    RUFY2 MUTATED RUFY2 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(233) Variable = OR2L2 MUTATION ANALYSIS
D233V1, survival
                 sevent
clus2              0  1
  OR2L2 MUTATED    3  5
  OR2L2 WILD-TYPE 96 45
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              8             141 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
              5              45 
$`OR2L2 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-49-4505 TCGA-50-5051 TCGA-50-5931 
       37.02         9.96        24.03        14.07        14.96         8.78 
TCGA-50-5933 TCGA-55-1595 
       77.88        48.62 

$`OR2L2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR2L2 MUTATED OR2L2 WILD-TYPE 
           8.78            0.07 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
          77.88           85.32 
  OR2L2 MUTATED OR2L2 WILD-TYPE 
         19.495          13.150 
[1] "8.8 - 77.9 (19.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "OR2L2 MUTATED"   "OR2L2 MUTATED"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE"   "OR2L2 MUTATED" "OR2L2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" "OR2L2 WILD-TYPE" 
     TCGA-91-6836 
"OR2L2 WILD-TYPE" 
[1] "hr=" "1.1"
D233V2, continuous
D233V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L2 MUTATED      5    4
  OR2L2 WILD-TYPE   88   75
        clus
vv       OR2L2 MUTATED OR2L2 WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D233V4, continuous
D233V5, multiclass
D233V6, multiclass
    clus
vv   OR2L2 MUTATED OR2L2 WILD-TYPE
  T1             1              40
  T2             6             102
  T3             0              14
  T4             2               6
D233V7, multiclass
       clus
vv      OR2L2 MUTATED OR2L2 WILD-TYPE
  N0                3              92
  N1                3              34
  N2+N3             3              32
D233V8, multiclass
    clus
vv   OR2L2 MUTATED OR2L2 WILD-TYPE
  M0             8             129
  M1             1               8
  MX             0              22
D233V9, multiclass
     clus
vv    OR2L2 MUTATED OR2L2 WILD-TYPE
  I               3              85
  II              2              31
  III             3              36
  IV              1               8
D233V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L2 MUTATED      2    7
  OR2L2 WILD-TYPE   14  149
     clus
vv    OR2L2 MUTATED OR2L2 WILD-TYPE
  NO              2              14
  YES             7             149
D233V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2L2 MUTATED      0    9
  OR2L2 WILD-TYPE   28  135
     clus
vv    OR2L2 MUTATED OR2L2 WILD-TYPE
  NO              0              28
  YES             9             135

Clustering(234) Variable = OR5M10 MUTATION ANALYSIS
D234V1, survival
                  sevent
clus2               0  1
  OR5M10 MUTATED    5  1
  OR5M10 WILD-TYPE 94 49
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               6              143 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
               1               49 
$`OR5M10 MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-6778 
        9.96        47.61         6.44         4.60         3.48        36.49 

$`OR5M10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        6.21         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR5M10 MUTATED OR5M10 WILD-TYPE 
            3.48             0.07 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
           47.61            85.32 
  OR5M10 MUTATED OR5M10 WILD-TYPE 
            8.20            14.01 
[1] "3.5 - 47.6 (8.2)"  "0.1 - 85.3 (14.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "OR5M10 MUTATED"   "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
  "OR5M10 MUTATED" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" "OR5M10 WILD-TYPE" 
      TCGA-91-6836 
"OR5M10 WILD-TYPE" 
[1] "hr=" "1.9"
D234V2, continuous
D234V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5M10 MUTATED      3    3
  OR5M10 WILD-TYPE   90   76
        clus
vv       OR5M10 MUTATED OR5M10 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D234V4, continuous
D234V5, multiclass
D234V6, multiclass
    clus
vv   OR5M10 MUTATED OR5M10 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              0               14
  T4              1                7
D234V7, multiclass
       clus
vv      OR5M10 MUTATED OR5M10 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
D234V8, multiclass
    clus
vv   OR5M10 MUTATED OR5M10 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D234V9, multiclass
     clus
vv    OR5M10 MUTATED OR5M10 WILD-TYPE
  I                4               84
  II               0               33
  III              2               37
  IV               0                9
D234V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5M10 MUTATED      1    5
  OR5M10 WILD-TYPE   15  151
     clus
vv    OR5M10 MUTATED OR5M10 WILD-TYPE
  NO               1               15
  YES              5              151
D234V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5M10 MUTATED      2    4
  OR5M10 WILD-TYPE   26  140
     clus
vv    OR5M10 MUTATED OR5M10 WILD-TYPE
  NO               2               26
  YES              4              140

Clustering(235) Variable = PROS1 MUTATION ANALYSIS
D235V1, survival
                 sevent
clus2              0  1
  PROS1 MUTATED    6  3
  PROS1 WILD-TYPE 93 47
  PROS1 MUTATED PROS1 WILD-TYPE 
              9             140 
  PROS1 MUTATED PROS1 WILD-TYPE 
              3              47 
$`PROS1 MUTATED`
TCGA-05-4396 TCGA-05-4415 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-49-4494 
        9.96         2.96        30.02        26.01        25.02        35.54 
TCGA-50-5049 TCGA-67-3771 TCGA-67-6217 
       48.82         1.97        13.87 

$`PROS1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 
        0.59         2.04         0.59         0.89         0.69         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PROS1 MUTATED PROS1 WILD-TYPE 
           1.97            0.07 
  PROS1 MUTATED PROS1 WILD-TYPE 
          48.82           85.32 
  PROS1 MUTATED PROS1 WILD-TYPE 
          25.02           13.15 
[1] "2.0 - 48.8 (25.0)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PROS1 MUTATED"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6836 
"PROS1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PROS1 MUTATED"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6836 
"PROS1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "PROS1 MUTATED"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE"   "PROS1 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"PROS1 WILD-TYPE"   "PROS1 MUTATED" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" "PROS1 WILD-TYPE" 
     TCGA-91-6836 
"PROS1 WILD-TYPE" 
[1] "hr=" "1"  
D235V2, continuous
D235V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PROS1 MUTATED      4    6
  PROS1 WILD-TYPE   89   73
        clus
vv       PROS1 MUTATED PROS1 WILD-TYPE
  FEMALE             4              89
  MALE               6              73
D235V4, continuous
D235V5, multiclass
D235V6, multiclass
    clus
vv   PROS1 MUTATED PROS1 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             2              12
  T4             2               6
D235V7, multiclass
       clus
vv      PROS1 MUTATED PROS1 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             2              33
D235V8, multiclass
    clus
vv   PROS1 MUTATED PROS1 WILD-TYPE
  M0            10             127
  M1             0               9
  MX             0              22
D235V9, multiclass
     clus
vv    PROS1 MUTATED PROS1 WILD-TYPE
  I               4              84
  II              3              30
  III             3              36
  IV              0               9
D235V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PROS1 MUTATED      1    9
  PROS1 WILD-TYPE   15  147
     clus
vv    PROS1 MUTATED PROS1 WILD-TYPE
  NO              1              15
  YES             9             147
D235V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PROS1 MUTATED      0   10
  PROS1 WILD-TYPE   28  134
     clus
vv    PROS1 MUTATED PROS1 WILD-TYPE
  NO              0              28
  YES            10             134

Clustering(236) Variable = GTF2I MUTATION ANALYSIS
D236V1, survival
                 sevent
clus2              0  1
  GTF2I MUTATED    1  1
  GTF2I WILD-TYPE 98 49
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             147 
  GTF2I MUTATED GTF2I WILD-TYPE 
              1              49 
$`GTF2I MUTATED`
TCGA-05-4396 TCGA-44-2662 
        9.96        15.78 

$`GTF2I WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  GTF2I MUTATED GTF2I WILD-TYPE 
           9.96            0.07 
  GTF2I MUTATED GTF2I WILD-TYPE 
          15.78           85.32 
  GTF2I MUTATED GTF2I WILD-TYPE 
          12.87           13.87 
[1] "10.0 - 15.8 (12.9)" "0.1 - 85.3 (13.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
  "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             147 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4415      TCGA-05-4417      TCGA-05-4418 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4424      TCGA-05-4426      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5429 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-5643 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6543 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3774      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4662 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4676      TCGA-73-4677      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D236V2, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             153 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-4434      TCGA-05-5420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-5643 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-6642      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3774      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
D236V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      1    2
  GTF2I WILD-TYPE   92   77
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D236V4, continuous
D236V5, multiclass
D236V6, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  T1             0              41
  T2             2             106
  T3             0              14
  T4             1               7
D236V7, multiclass
       clus
vv      GTF2I MUTATED GTF2I WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             0              35
D236V8, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  M0             3             134
  M1             0               9
  MX             0              22
D236V9, multiclass
     clus
vv    GTF2I MUTATED GTF2I WILD-TYPE
  I               1              87
  II              1              32
  III             1              38
  IV              0               9
D236V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      0    3
  GTF2I WILD-TYPE   16  153
     clus
vv    GTF2I MUTATED GTF2I WILD-TYPE
  NO              0              16
  YES             3             153
D236V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      2    1
  GTF2I WILD-TYPE   26  143
     clus
vv    GTF2I MUTATED GTF2I WILD-TYPE
  NO              2              26
  YES             1             143

Clustering(237) Variable = FAM5B MUTATION ANALYSIS
D237V1, survival
                 sevent
clus2              0  1
  FAM5B MUTATED    8  3
  FAM5B WILD-TYPE 91 47
  FAM5B MUTATED FAM5B WILD-TYPE 
             11             138 
  FAM5B MUTATED FAM5B WILD-TYPE 
              3              47 
$`FAM5B MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-38-4631 TCGA-44-2655 
        3.98        19.92        14.01        24.03        11.64        18.87 
TCGA-44-3398 TCGA-50-5049 TCGA-50-5051 TCGA-64-5815 TCGA-73-4670 
        8.32        48.82        14.96         7.33         0.46 

$`FAM5B WILD-TYPE`
TCGA-05-4249 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
       38.07        37.02         9.96        47.05         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
        2.96        14.93         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        44.61         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 
       12.13        12.99         4.93        20.48        71.47        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  FAM5B MUTATED FAM5B WILD-TYPE 
           0.46            0.07 
  FAM5B MUTATED FAM5B WILD-TYPE 
          48.82           85.32 
  FAM5B MUTATED FAM5B WILD-TYPE 
          14.01           13.51 
[1] "0.5 - 48.8 (14.0)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5B WILD-TYPE"   "FAM5B MUTATED"   "FAM5B MUTATED"   "FAM5B MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FAM5B MUTATED"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6836 
"FAM5B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5B WILD-TYPE"   "FAM5B MUTATED"   "FAM5B MUTATED"   "FAM5B MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FAM5B MUTATED"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6836 
"FAM5B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5B WILD-TYPE"   "FAM5B MUTATED"   "FAM5B MUTATED"   "FAM5B MUTATED" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FAM5B MUTATED"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-91-6836 
"FAM5B WILD-TYPE" 
[1] "hr=" "1.2"
D237V2, continuous
D237V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      6    8
  FAM5B WILD-TYPE   87   71
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  FEMALE             6              87
  MALE               8              71
D237V4, continuous
D237V5, multiclass
D237V6, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  T1             2              39
  T2            11              97
  T3             1              13
  T4             0               8
D237V7, multiclass
       clus
vv      FAM5B MUTATED FAM5B WILD-TYPE
  N0                8              87
  N1                3              34
  N2+N3             3              32
D237V8, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  M0            12             125
  M1             2               7
  MX             0              22
D237V9, multiclass
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  I               7              81
  II              2              31
  III             3              36
  IV              2               7
D237V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      2   12
  FAM5B WILD-TYPE   14  144
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  NO              2              14
  YES            12             144
D237V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      2   12
  FAM5B WILD-TYPE   26  132
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  NO              2              26
  YES            12             132

Clustering(238) Variable = KRT71 MUTATION ANALYSIS
D238V1, survival
                 sevent
clus2              0  1
  KRT71 MUTATED    2  1
  KRT71 WILD-TYPE 97 49
  KRT71 MUTATED KRT71 WILD-TYPE 
              3             146 
  KRT71 MUTATED KRT71 WILD-TYPE 
              1              49 
$`KRT71 MUTATED`
TCGA-05-4382 TCGA-50-5045 TCGA-64-5778 
       19.92        71.47        30.44 

$`KRT71 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRT71 MUTATED KRT71 WILD-TYPE 
          19.92            0.07 
  KRT71 MUTATED KRT71 WILD-TYPE 
          71.47           85.32 
  KRT71 MUTATED KRT71 WILD-TYPE 
          30.44           13.15 
[1] "19.9 - 71.5 (30.4)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6836 
"KRT71 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6836 
"KRT71 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE"   "KRT71 MUTATED" "KRT71 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-91-6836 
"KRT71 WILD-TYPE" 
[1] "hr=" "2.3"
D238V2, continuous
D238V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT71 MUTATED      1    3
  KRT71 WILD-TYPE   92   76
        clus
vv       KRT71 MUTATED KRT71 WILD-TYPE
  FEMALE             1              92
  MALE               3              76
D238V4, continuous
[1] "Remove cluster labels:" "KRT71 MUTATED"         
clus
  KRT71 MUTATED KRT71 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"KRT71 WILD-TYPE" "KRT71 WILD-TYPE" "KRT71 WILD-TYPE" 
D238V5, multiclass
D238V6, multiclass
    clus
vv   KRT71 MUTATED KRT71 WILD-TYPE
  T1             0              41
  T2             4             104
  T3             0              14
  T4             0               8
D238V7, multiclass
       clus
vv      KRT71 MUTATED KRT71 WILD-TYPE
  N0                2              93
  N1                2              35
  N2+N3             0              35
D238V8, multiclass
    clus
vv   KRT71 MUTATED KRT71 WILD-TYPE
  M0             4             133
  M1             0               9
  MX             0              22
D238V9, multiclass
     clus
vv    KRT71 MUTATED KRT71 WILD-TYPE
  I               3              85
  II              1              32
  III             0              39
  IV              0               9
D238V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT71 MUTATED      1    3
  KRT71 WILD-TYPE   15  153
     clus
vv    KRT71 MUTATED KRT71 WILD-TYPE
  NO              1              15
  YES             3             153
D238V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT71 MUTATED      1    3
  KRT71 WILD-TYPE   27  141
     clus
vv    KRT71 MUTATED KRT71 WILD-TYPE
  NO              1              27
  YES             3             141

Clustering(239) Variable = P2RX7 MUTATION ANALYSIS
D239V1, survival
                 sevent
clus2              0  1
  P2RX7 MUTATED    3  1
  P2RX7 WILD-TYPE 96 49
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             145 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              1              49 
$`P2RX7 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-49-6743 TCGA-91-6836 
        9.96        25.02        12.13         0.36 

$`P2RX7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  P2RX7 MUTATED P2RX7 WILD-TYPE 
           0.36            0.07 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
          25.02           85.32 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
         11.045          14.010 
[1] "0.4 - 25.0 (11.0)" "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
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     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-91-6836 
  "P2RX7 MUTATED" 
[1] "hr=" "1.6"
D239V2, continuous
D239V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  P2RX7 MUTATED      3    1
  P2RX7 WILD-TYPE   90   78
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  FEMALE             3              90
  MALE               1              78
D239V4, continuous
D239V5, multiclass
D239V6, multiclass
    clus
vv   P2RX7 MUTATED P2RX7 WILD-TYPE
  T1             1              40
  T2             2             106
  T3             0              14
  T4             1               7
D239V7, multiclass
       clus
vv      P2RX7 MUTATED P2RX7 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             1              34
D239V8, multiclass
    clus
vv   P2RX7 MUTATED P2RX7 WILD-TYPE
  M0             2             135
  M1             0               9
  MX             2              20
D239V9, multiclass
     clus
vv    P2RX7 MUTATED P2RX7 WILD-TYPE
  I               2              86
  II              0              33
  III             2              37
  IV              0               9
D239V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  P2RX7 MUTATED      0    4
  P2RX7 WILD-TYPE   16  152
     clus
vv    P2RX7 MUTATED P2RX7 WILD-TYPE
  NO              0              16
  YES             4             152
D239V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  P2RX7 MUTATED      1    3
  P2RX7 WILD-TYPE   27  141
     clus
vv    P2RX7 MUTATED P2RX7 WILD-TYPE
  NO              1              27
  YES             3             141

Clustering(240) Variable = CRNN MUTATION ANALYSIS
D240V1, survival
                sevent
clus2             0  1
  CRNN MUTATED    4  4
  CRNN WILD-TYPE 95 46
  CRNN MUTATED CRNN WILD-TYPE 
             8            141 
  CRNN MUTATED CRNN WILD-TYPE 
             4             46 
$`CRNN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-49-4487 TCGA-49-4490 
        3.98        37.02         9.96        30.02        28.11        12.66 
TCGA-64-5781 TCGA-91-6836 
       39.52         0.36 

$`CRNN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07        19.92        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
       36.49        16.41        76.21        28.57        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        16.67         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33         1.28         1.15 

  CRNN MUTATED CRNN WILD-TYPE 
          0.36           0.07 
  CRNN MUTATED CRNN WILD-TYPE 
         39.52          85.32 
  CRNN MUTATED CRNN WILD-TYPE 
        20.385         13.870 
[1] "0.4 - 39.5 (20.4)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
  "CRNN MUTATED"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE"   "CRNN MUTATED" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CRNN WILD-TYPE"   "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
  "CRNN MUTATED" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" "CRNN WILD-TYPE" 
    TCGA-91-6836 
  "CRNN MUTATED" 
[1] "hr=" "1.6"
D240V2, continuous
D240V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRNN MUTATED      6    3
  CRNN WILD-TYPE   87   76
        clus
vv       CRNN MUTATED CRNN WILD-TYPE
  FEMALE            6             87
  MALE              3             76
D240V4, continuous
D240V5, multiclass
D240V6, multiclass
    clus
vv   CRNN MUTATED CRNN WILD-TYPE
  T1            1             40
  T2            4            104
  T3            3             11
  T4            1              7
D240V7, multiclass
       clus
vv      CRNN MUTATED CRNN WILD-TYPE
  N0               6             89
  N1               2             35
  N2+N3            1             34
D240V8, multiclass
    clus
vv   CRNN MUTATED CRNN WILD-TYPE
  M0            8            129
  M1            0              9
  MX            1             21
D240V9, multiclass
     clus
vv    CRNN MUTATED CRNN WILD-TYPE
  I              5             83
  II             1             32
  III            3             36
  IV             0              9
D240V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRNN MUTATED      1    8
  CRNN WILD-TYPE   15  148
     clus
vv    CRNN MUTATED CRNN WILD-TYPE
  NO             1             15
  YES            8            148
D240V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRNN MUTATED      1    8
  CRNN WILD-TYPE   27  136
     clus
vv    CRNN MUTATED CRNN WILD-TYPE
  NO             1             27
  YES            8            136

Clustering(241) Variable = POT1 MUTATION ANALYSIS
D241V1, survival
                sevent
clus2             0  1
  POT1 MUTATED    6  2
  POT1 WILD-TYPE 93 48
  POT1 MUTATED POT1 WILD-TYPE 
             8            141 
  POT1 MUTATED POT1 WILD-TYPE 
             2             48 
$`POT1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4629 TCGA-44-2668 TCGA-44-6145 TCGA-44-6774 
       19.92         9.96        28.37         8.09         3.35         5.42 
TCGA-64-1678 TCGA-67-3771 
       39.09         1.97 

$`POT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         3.19        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         0.30         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        3.12         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  POT1 MUTATED POT1 WILD-TYPE 
          1.97           0.07 
  POT1 MUTATED POT1 WILD-TYPE 
         39.09          85.32 
  POT1 MUTATED POT1 WILD-TYPE 
         9.025         14.010 
[1] "2.0 - 39.1 (9.0)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
  "POT1 MUTATED" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" "POT1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE"   "POT1 MUTATED" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" "POT1 WILD-TYPE" 
    TCGA-91-6836 
"POT1 WILD-TYPE" 
[1] "hr=" "1.2"
D241V2, continuous
D241V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POT1 MUTATED      4    4
  POT1 WILD-TYPE   89   75
        clus
vv       POT1 MUTATED POT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D241V4, continuous
D241V5, multiclass
D241V6, multiclass
    clus
vv   POT1 MUTATED POT1 WILD-TYPE
  T1            3             38
  T2            3            105
  T3            1             13
  T4            1              7
D241V7, multiclass
       clus
vv      POT1 MUTATED POT1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
D241V8, multiclass
    clus
vv   POT1 MUTATED POT1 WILD-TYPE
  M0            8            129
  M1            0              9
  MX            0             22
D241V9, multiclass
     clus
vv    POT1 MUTATED POT1 WILD-TYPE
  I              4             84
  II             2             31
  III            2             37
  IV             0              9
D241V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POT1 MUTATED      0    8
  POT1 WILD-TYPE   16  148
     clus
vv    POT1 MUTATED POT1 WILD-TYPE
  NO             0             16
  YES            8            148
D241V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  POT1 MUTATED      1    7
  POT1 WILD-TYPE   27  137
     clus
vv    POT1 MUTATED POT1 WILD-TYPE
  NO             1             27
  YES            7            137

Clustering(242) Variable = SERPINB5 MUTATION ANALYSIS
D242V1, survival
                    sevent
clus2                 0  1
  SERPINB5 MUTATED    3  0
  SERPINB5 WILD-TYPE 96 50
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 3                146 
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
                 0                 50 
$`SERPINB5 MUTATED`
TCGA-05-5423 TCGA-44-6774 TCGA-67-6215 
        4.96         5.42         0.89 

$`SERPINB5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
        0.30         3.35         9.93         7.76         3.12         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        0.59         2.04         0.59         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
              0.89               0.07 
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
              5.42              85.32 
  SERPINB5 MUTATED SERPINB5 WILD-TYPE 
              4.96              14.04 
[1] "0.9 - 5.4 (5.0)"   "0.1 - 85.3 (14.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "SERPINB5 MUTATED" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE"   "SERPINB5 MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB5 WILD-TYPE" "SERPINB5 WILD-TYPE" 
[1] "hr="     "1200000"
D242V2, continuous
D242V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB5 MUTATED      2    1
  SERPINB5 WILD-TYPE   91   78
        clus
vv       SERPINB5 MUTATED SERPINB5 WILD-TYPE
  FEMALE                2                 91
  MALE                  1                 78
D242V4, continuous
D242V5, multiclass
D242V6, multiclass
    clus
vv   SERPINB5 MUTATED SERPINB5 WILD-TYPE
  T1                1                 40
  T2                2                106
  T3                0                 14
  T4                0                  8
D242V7, multiclass
       clus
vv      SERPINB5 MUTATED SERPINB5 WILD-TYPE
  N0                   1                 94
  N1                   1                 36
  N2+N3                1                 34
D242V8, multiclass
    clus
vv   SERPINB5 MUTATED SERPINB5 WILD-TYPE
  M0                3                134
  M1                0                  9
  MX                0                 22
D242V9, multiclass
     clus
vv    SERPINB5 MUTATED SERPINB5 WILD-TYPE
  I                  1                 87
  II                 1                 32
  III                1                 38
  IV                 0                  9
D242V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB5 MUTATED      0    3
  SERPINB5 WILD-TYPE   16  153
     clus
vv    SERPINB5 MUTATED SERPINB5 WILD-TYPE
  NO                 0                 16
  YES                3                153
D242V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB5 MUTATED      1    2
  SERPINB5 WILD-TYPE   27  142
     clus
vv    SERPINB5 MUTATED SERPINB5 WILD-TYPE
  NO                 1                 27
  YES                2                142

Clustering(243) Variable = DEFB112 MUTATION ANALYSIS
D243V1, survival
                   sevent
clus2                0  1
  DEFB112 MUTATED    3  1
  DEFB112 WILD-TYPE 96 49
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               145 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                49 
$`DEFB112 MUTATED`
TCGA-44-2656 TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 
       19.10        23.05        16.67        20.28 

$`DEFB112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61         5.19        18.87        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  DEFB112 MUTATED DEFB112 WILD-TYPE 
            16.67              0.07 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            23.05             85.32 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            19.69             13.15 
[1] "16.7 - 23.1 (19.7)" "0.1 - 85.3 (13.2)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6836 
"DEFB112 WILD-TYPE" 
[1] "hr=" "1"  
D243V2, continuous
D243V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   92   76
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  FEMALE               1                92
  MALE                 3                76
D243V4, continuous
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D243V5, multiclass
D243V6, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               0                 8
D243V7, multiclass
       clus
vv      DEFB112 MUTATED DEFB112 WILD-TYPE
  N0                  3                92
  N1                  0                37
  N2+N3               1                34
D243V8, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  M0               3               134
  M1               1                 8
  MX               0                22
D243V9, multiclass
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  I                 2                86
  II                0                33
  III               1                38
  IV                1                 8
D243V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   15  153
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  NO                1                15
  YES               3               153
D243V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      2    2
  DEFB112 WILD-TYPE   26  142
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  NO                2                26
  YES               2               142

Clustering(244) Variable = FSTL5 MUTATION ANALYSIS
D244V1, survival
                 sevent
clus2              0  1
  FSTL5 MUTATED   10  3
  FSTL5 WILD-TYPE 89 47
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             13             136 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              3              47 
$`FSTL5 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-38-6178 TCGA-44-3918 
       19.92        37.02         9.96        47.05         5.19         6.44 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6777 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        7.76         5.42        32.45        52.57        20.28        15.35 
TCGA-91-6836 
        0.36 

$`FSTL5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 
       38.07         3.98        14.01        24.03         8.02        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
        2.96        14.93         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        11.64        44.61        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 
        6.84         0.30         3.35         9.93         3.12         2.70 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  FSTL5 MUTATED FSTL5 WILD-TYPE 
           0.36            0.07 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          52.57           85.32 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          15.35           13.51 
[1] "0.4 - 52.6 (15.3)" "0.1 - 85.3 (13.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
  "FSTL5 MUTATED"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED"   "FSTL5 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-91-6836 
  "FSTL5 MUTATED" 
[1] "hr=" "1.5"
D244V2, continuous
D244V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED     11    5
  FSTL5 WILD-TYPE   82   74
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  FEMALE            11              82
  MALE               5              74
D244V4, continuous
[1] "Remove cluster labels:" "FSTL5 MUTATED"         
clus
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
D244V5, multiclass
D244V6, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  T1             4              37
  T2             9              99
  T3             1              13
  T4             2               6
D244V7, multiclass
       clus
vv      FSTL5 MUTATED FSTL5 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             3              32
D244V8, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  M0            12             125
  M1             1               8
  MX             2              20
D244V9, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  I              10              78
  II              1              32
  III             4              35
  IV              1               8
D244V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      2   14
  FSTL5 WILD-TYPE   14  142
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  NO              2              14
  YES            14             142
D244V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      3   13
  FSTL5 WILD-TYPE   25  131
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  NO              3              25
  YES            13             131

Clustering(245) Variable = OR8K3 MUTATION ANALYSIS
D245V1, survival
                 sevent
clus2              0  1
  OR8K3 MUTATED    2  3
  OR8K3 WILD-TYPE 97 47
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              5             144 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              3              47 
$`OR8K3 MUTATED`
TCGA-05-4396 TCGA-50-6590 TCGA-50-6592 TCGA-64-5781 TCGA-67-6217 
        9.96        42.31        25.51        39.52        13.87 

$`OR8K3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 
        9.37         4.44        12.26        11.47         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.59         0.89         0.69         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  OR8K3 MUTATED OR8K3 WILD-TYPE 
           9.96            0.07 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
          42.31           85.32 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
          25.51           13.15 
[1] "10.0 - 42.3 (25.5)" "0.1 - 85.3 (13.2)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-91-6836 
"OR8K3 WILD-TYPE" 
[1] "hr=" "1.4"
D245V2, continuous
D245V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      4    1
  OR8K3 WILD-TYPE   89   78
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  FEMALE             4              89
  MALE               1              78
D245V4, continuous
D245V5, multiclass
D245V6, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  T1             0              41
  T2             4             104
  T3             0              14
  T4             1               7
D245V7, multiclass
       clus
vv      OR8K3 MUTATED OR8K3 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             0              35
D245V8, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D245V9, multiclass
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  I               3              85
  II              1              32
  III             1              38
  IV              0               9
D245V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    5
  OR8K3 WILD-TYPE   16  151
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0              16
  YES             5             151
D245V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    5
  OR8K3 WILD-TYPE   28  139
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0              28
  YES             5             139

Clustering(246) Variable = OR10A2 MUTATION ANALYSIS
D246V1, survival
                  sevent
clus2               0  1
  OR10A2 MUTATED    5  1
  OR10A2 WILD-TYPE 94 49
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               6              143 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               1               49 
$`OR10A2 MUTATED`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-44-6776 TCGA-73-4668 TCGA-91-6829 
       29.95        26.01        25.02        63.72        15.35        41.33 

$`OR10A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22         1.28         1.15         0.36 

  OR10A2 MUTATED OR10A2 WILD-TYPE 
           15.35             0.07 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           63.72            85.32 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
           27.98            12.99 
[1] "15.3 - 63.7 (28.0)" "0.1 - 85.3 (13.0)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10A2 MUTATED" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE"   "OR10A2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR10A2 WILD-TYPE"   "OR10A2 MUTATED" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-91-6836 
"OR10A2 WILD-TYPE" 
[1] "hr=" "3.6"
D246V2, continuous
D246V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      3    4
  OR10A2 WILD-TYPE   90   75
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D246V4, continuous
[1] "Remove cluster labels:" "OR10A2 MUTATED"        
clus
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" "OR10A2 WILD-TYPE" 
D246V5, multiclass
D246V6, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  T1              1               40
  T2              5              103
  T3              1               13
  T4              0                8
D246V7, multiclass
       clus
vv      OR10A2 MUTATED OR10A2 WILD-TYPE
  N0                 4               91
  N1                 3               34
  N2+N3              0               35
D246V8, multiclass
    clus
vv   OR10A2 MUTATED OR10A2 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D246V9, multiclass
     clus
vv    OR10A2 MUTATED OR10A2 WILD-TYPE
  I                4               84
  II               3               30
  III              0               39
  IV               0                9
D246V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      0    7
  OR10A2 WILD-TYPE   16  149
     clus
vv    OR10A2 MUTATED OR10A2 WILD-TYPE
  NO               0               16
  YES              7              149
D246V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A2 MUTATED      1    6
  OR10A2 WILD-TYPE   27  138
     clus
vv    OR10A2 MUTATED OR10A2 WILD-TYPE
  NO               1               27
  YES              6              138

Clustering(247) Variable = ARPP21 MUTATION ANALYSIS
D247V1, survival
                  sevent
clus2               0  1
  ARPP21 MUTATED    8  4
  ARPP21 WILD-TYPE 91 46
  ARPP21 MUTATED ARPP21 WILD-TYPE 
              12              137 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
               4               46 
$`ARPP21 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4632 TCGA-44-2655 
       19.92         9.96        47.05        26.01        44.61        18.87 
TCGA-49-4488 TCGA-49-6744 TCGA-50-5066 TCGA-55-1596 TCGA-64-5775 TCGA-64-5778 
       28.57        12.99         9.76        45.17         0.10        30.44 

$`ARPP21 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       38.07         3.98        14.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        11.64         5.19        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        83.84        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  ARPP21 MUTATED ARPP21 WILD-TYPE 
            0.10             0.07 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
           47.05            85.32 
  ARPP21 MUTATED ARPP21 WILD-TYPE 
          22.965           13.150 
[1] "0.1 - 47.0 (23.0)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
  "ARPP21 MUTATED" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE"   "ARPP21 MUTATED" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ARPP21 WILD-TYPE"   "ARPP21 MUTATED"   "ARPP21 MUTATED" "ARPP21 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-91-6836 
"ARPP21 WILD-TYPE" 
[1] "hr=" "1.2"
D247V2, continuous
D247V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARPP21 MUTATED      6    9
  ARPP21 WILD-TYPE   87   70
        clus
vv       ARPP21 MUTATED ARPP21 WILD-TYPE
  FEMALE              6               87
  MALE                9               70
D247V4, continuous
[1] "Remove cluster labels:" "ARPP21 MUTATED"        
clus
  ARPP21 MUTATED ARPP21 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676 
"ARPP21 WILD-TYPE" "ARPP21 WILD-TYPE" 
D247V5, multiclass
D247V6, multiclass
    clus
vv   ARPP21 MUTATED ARPP21 WILD-TYPE
  T1              2               39
  T2             10               98
  T3              0               14
  T4              3                5
D247V7, multiclass
       clus
vv      ARPP21 MUTATED ARPP21 WILD-TYPE
  N0                 8               87
  N1                 5               32
  N2+N3              2               33
D247V8, multiclass
    clus
vv   ARPP21 MUTATED ARPP21 WILD-TYPE
  M0             12              125
  M1              1                8
  MX              2               20
D247V9, multiclass
     clus
vv    ARPP21 MUTATED ARPP21 WILD-TYPE
  I                7               81
  II               3               30
  III              4               35
  IV               1                8
D247V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARPP21 MUTATED      0   15
  ARPP21 WILD-TYPE   16  141
     clus
vv    ARPP21 MUTATED ARPP21 WILD-TYPE
  NO               0               16
  YES             15              141
D247V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARPP21 MUTATED      2   13
  ARPP21 WILD-TYPE   26  131
     clus
vv    ARPP21 MUTATED ARPP21 WILD-TYPE
  NO               2               26
  YES             13              131

Clustering(248) Variable = BLID MUTATION ANALYSIS
D248V1, survival
                sevent
clus2             0  1
  BLID MUTATED    1  3
  BLID WILD-TYPE 98 47
  BLID MUTATED BLID WILD-TYPE 
             4            145 
  BLID MUTATED BLID WILD-TYPE 
             3             47 
$`BLID MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4415 TCGA-73-4659 
       19.92         9.96         2.96        23.38 

$`BLID WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        14.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  BLID MUTATED BLID WILD-TYPE 
          2.96           0.07 
  BLID MUTATED BLID WILD-TYPE 
         23.38          85.32 
  BLID MUTATED BLID WILD-TYPE 
         14.94          13.87 
[1] "3.0 - 23.4 (14.9)" "0.1 - 85.3 (13.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6836 
"BLID WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6836 
"BLID WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"BLID WILD-TYPE" "BLID WILD-TYPE"   "BLID MUTATED" "BLID WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
  "BLID MUTATED" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-91-6836 
"BLID WILD-TYPE" 
[1] "hr=" "4.6"
D248V2, continuous
D248V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      0    4
  BLID WILD-TYPE   93   75
        clus
vv       BLID MUTATED BLID WILD-TYPE
  FEMALE            0             93
  MALE              4             75
D248V4, continuous
[1] "Remove cluster labels:" "BLID MUTATED"          
clus
  BLID MUTATED BLID WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4662     TCGA-73-4666 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"BLID WILD-TYPE" "BLID WILD-TYPE" "BLID WILD-TYPE" 
D248V5, multiclass
D248V6, multiclass
    clus
vv   BLID MUTATED BLID WILD-TYPE
  T1            0             41
  T2            2            106
  T3            0             14
  T4            2              6
D248V7, multiclass
       clus
vv      BLID MUTATED BLID WILD-TYPE
  N0               1             94
  N1               1             36
  N2+N3            2             33
D248V8, multiclass
    clus
vv   BLID MUTATED BLID WILD-TYPE
  M0            4            133
  M1            0              9
  MX            0             22
D248V9, multiclass
     clus
vv    BLID MUTATED BLID WILD-TYPE
  I              1             87
  II             0             33
  III            3             36
  IV             0              9
D248V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      0    4
  BLID WILD-TYPE   16  152
     clus
vv    BLID MUTATED BLID WILD-TYPE
  NO             0             16
  YES            4            152
D248V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BLID MUTATED      0    4
  BLID WILD-TYPE   28  140
     clus
vv    BLID MUTATED BLID WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(249) Variable = FGB MUTATION ANALYSIS
D249V1, survival
               sevent
clus2            0  1
  FGB MUTATED    7  3
  FGB WILD-TYPE 92 47
  FGB MUTATED FGB WILD-TYPE 
           10           139 
  FGB MUTATED FGB WILD-TYPE 
            3            47 
$`FGB MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-38-4626 TCGA-44-2656 TCGA-44-6778 TCGA-49-4506 
        9.96        30.02        85.32        19.10        36.49        32.84 
TCGA-50-5044 TCGA-50-5941 TCGA-50-5942 TCGA-64-1676 
       20.48         9.37         4.44        56.81 

$`FGB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       29.95        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        47.61        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       18.87        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        12.99         4.93        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  FGB MUTATED FGB WILD-TYPE 
         4.44          0.07 
  FGB MUTATED FGB WILD-TYPE 
        85.32         83.84 
  FGB MUTATED FGB WILD-TYPE 
        25.25         13.15 
[1] "4.4 - 85.3 (25.2)" "0.1 - 83.8 (13.2)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4390 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4424 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-91-6828 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
[1] "hr=" "2.1"
D249V2, continuous
D249V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      6    5
  FGB WILD-TYPE   87   74
        clus
vv       FGB MUTATED FGB WILD-TYPE
  FEMALE           6            87
  MALE             5            74
D249V4, continuous
D249V5, multiclass
D249V6, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  T1           3            38
  T2           4           104
  T3           2            12
  T4           2             6
D249V7, multiclass
       clus
vv      FGB MUTATED FGB WILD-TYPE
  N0              6            89
  N1              3            34
  N2+N3           2            33
D249V8, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  M0          10           127
  M1           0             9
  MX           1            21
D249V9, multiclass
     clus
vv    FGB MUTATED FGB WILD-TYPE
  I             3            85
  II            3            30
  III           4            35
  IV            0             9
D249V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      1   10
  FGB WILD-TYPE   15  146
     clus
vv    FGB MUTATED FGB WILD-TYPE
  NO            1            15
  YES          10           146
D249V11, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      0   11
  FGB WILD-TYPE   28  133
     clus
vv    FGB MUTATED FGB WILD-TYPE
  NO            0            28
  YES          11           133

Clustering(250) Variable = TCTEX1D1 MUTATION ANALYSIS
D250V1, survival
                    sevent
clus2                 0  1
  TCTEX1D1 MUTATED    3  2
  TCTEX1D1 WILD-TYPE 96 48
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 5                144 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
                 2                 48 
$`TCTEX1D1 MUTATED`
TCGA-05-4249 TCGA-44-3918 TCGA-64-1676 TCGA-64-5775 TCGA-91-6829 
       38.07         6.44        56.81         0.10        41.33 

$`TCTEX1D1 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        8.32         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        83.84        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25         1.22         1.28         1.15         0.36 

  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
              0.10               0.07 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
             56.81              85.32 
  TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE 
             38.07              13.51 
[1] "0.1 - 56.8 (38.1)" "0.1 - 85.3 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"TCTEX1D1 WILD-TYPE"   "TCTEX1D1 MUTATED" "TCTEX1D1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"TCTEX1D1 WILD-TYPE" "TCTEX1D1 WILD-TYPE" 
[1] "hr=" "1.4"
D250V2, continuous
D250V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TCTEX1D1 MUTATED      1    4
  TCTEX1D1 WILD-TYPE   92   75
        clus
vv       TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  FEMALE                1                 92
  MALE                  4                 75
D250V4, continuous
D250V5, multiclass
D250V6, multiclass
    clus
vv   TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  T1                2                 39
  T2                2                106
  T3                0                 14
  T4                1                  7
D250V7, multiclass
       clus
vv      TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  N0                   5                 90
  N1                   0                 37
  N2+N3                0                 35
D250V8, multiclass
    clus
vv   TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  M0                4                133
  M1                0                  9
  MX                1                 21
D250V9, multiclass
     clus
vv    TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  I                  4                 84
  II                 0                 33
  III                1                 38
  IV                 0                  9
D250V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TCTEX1D1 MUTATED      0    5
  TCTEX1D1 WILD-TYPE   16  151
     clus
vv    TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  NO                 0                 16
  YES                5                151
D250V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TCTEX1D1 MUTATED      0    5
  TCTEX1D1 WILD-TYPE   28  139
     clus
vv    TCTEX1D1 MUTATED TCTEX1D1 WILD-TYPE
  NO                 0                 28
  YES                5                139

Clustering(251) Variable = KDM4DL MUTATION ANALYSIS
D251V1, survival
                  sevent
clus2               0  1
  KDM4DL MUTATED    2  0
  KDM4DL WILD-TYPE 97 50
  KDM4DL MUTATED KDM4DL WILD-TYPE 
               2              147 
  KDM4DL MUTATED KDM4DL WILD-TYPE 
               0               50 
$`KDM4DL MUTATED`
TCGA-05-4420 TCGA-50-5049 
       29.95        48.82 

$`KDM4DL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        12.99         4.93        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  KDM4DL MUTATED KDM4DL WILD-TYPE 
           29.95             0.07 
  KDM4DL MUTATED KDM4DL WILD-TYPE 
           48.82            85.32 
  KDM4DL MUTATED KDM4DL WILD-TYPE 
          39.385           13.150 
[1] "29.9 - 48.8 (39.4)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"KDM4DL WILD-TYPE"   "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6836 
"KDM4DL WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"KDM4DL WILD-TYPE"   "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6836 
"KDM4DL WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"KDM4DL WILD-TYPE"   "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
  "KDM4DL MUTATED" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6836 
"KDM4DL WILD-TYPE" 
[1] "Remove cluster labels:" "KDM4DL MUTATED"        
clus
  KDM4DL MUTATED KDM4DL WILD-TYPE 
               2              147 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4424       TCGA-05-4426       TCGA-05-4427 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-4430       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5429 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-05-5715       TCGA-35-3615       TCGA-35-4122       TCGA-35-4123 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2656 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-3919       TCGA-44-4112 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4487       TCGA-49-4488 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-49-6745       TCGA-50-5044       TCGA-50-5045       TCGA-50-5051 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-1592       TCGA-55-1594 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6543 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1676       TCGA-64-1677 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-3770       TCGA-67-3771       TCGA-67-3772       TCGA-67-3773 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-67-3774       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4659       TCGA-73-4662 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-73-4676       TCGA-73-4677       TCGA-91-6828       TCGA-91-6829 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" "KDM4DL WILD-TYPE" 
D251V2, continuous
D251V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KDM4DL MUTATED      0    3
  KDM4DL WILD-TYPE   93   76
        clus
vv       KDM4DL MUTATED KDM4DL WILD-TYPE
  FEMALE              0               93
  MALE                3               76
D251V4, continuous
D251V5, multiclass
D251V6, multiclass
    clus
vv   KDM4DL MUTATED KDM4DL WILD-TYPE
  T1              0               41
  T2              3              105
  T3              0               14
  T4              0                8
D251V7, multiclass
       clus
vv      KDM4DL MUTATED KDM4DL WILD-TYPE
  N0                 3               92
  N1                 0               37
  N2+N3              0               35
D251V8, multiclass
    clus
vv   KDM4DL MUTATED KDM4DL WILD-TYPE
  M0              3              134
  M1              0                9
  MX              0               22
D251V9, multiclass
     clus
vv    KDM4DL MUTATED KDM4DL WILD-TYPE
  I                3               85
  II               0               33
  III              0               39
  IV               0                9
D251V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KDM4DL MUTATED      1    2
  KDM4DL WILD-TYPE   15  154
     clus
vv    KDM4DL MUTATED KDM4DL WILD-TYPE
  NO               1               15
  YES              2              154
D251V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  KDM4DL MUTATED      0    3
  KDM4DL WILD-TYPE   28  141
     clus
vv    KDM4DL MUTATED KDM4DL WILD-TYPE
  NO               0               28
  YES              3              141

Clustering(252) Variable = FCRL1 MUTATION ANALYSIS
D252V1, survival
                 sevent
clus2              0  1
  FCRL1 MUTATED    4  2
  FCRL1 WILD-TYPE 95 48
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              6             143 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              2              48 
$`FCRL1 MUTATED`
TCGA-35-5375 TCGA-44-2655 TCGA-49-4486 TCGA-49-4487 TCGA-50-5049 TCGA-73-4668 
        8.68        18.87        76.21        28.11        48.82        15.35 

$`FCRL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61         5.19        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4488 TCGA-49-4490 
       63.72        32.45        36.49        16.41        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  FCRL1 MUTATED FCRL1 WILD-TYPE 
           8.68            0.07 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
          76.21           85.32 
  FCRL1 MUTATED FCRL1 WILD-TYPE 
          23.49           13.15 
[1] "8.7 - 76.2 (23.5)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"FCRL1 WILD-TYPE"   "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED"   "FCRL1 MUTATED" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "FCRL1 MUTATED" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE"   "FCRL1 MUTATED" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-91-6836 
"FCRL1 WILD-TYPE" 
[1] "hr=" "1.9"
D252V2, continuous
D252V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL1 MUTATED      3    3
  FCRL1 WILD-TYPE   90   76
        clus
vv       FCRL1 MUTATED FCRL1 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D252V4, continuous
[1] "Remove cluster labels:" "FCRL1 MUTATED"         
clus
  FCRL1 MUTATED FCRL1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"FCRL1 WILD-TYPE" "FCRL1 WILD-TYPE" 
D252V5, multiclass
D252V6, multiclass
    clus
vv   FCRL1 MUTATED FCRL1 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             0              14
  T4             0               8
D252V7, multiclass
       clus
vv      FCRL1 MUTATED FCRL1 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             1              34
D252V8, multiclass
    clus
vv   FCRL1 MUTATED FCRL1 WILD-TYPE
  M0             6             131
  M1             0               9
  MX             0              22
D252V9, multiclass
     clus
vv    FCRL1 MUTATED FCRL1 WILD-TYPE
  I               4              84
  II              1              32
  III             1              38
  IV              0               9
D252V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL1 MUTATED      1    5
  FCRL1 WILD-TYPE   15  151
     clus
vv    FCRL1 MUTATED FCRL1 WILD-TYPE
  NO              1              15
  YES             5             151
D252V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL1 MUTATED      1    5
  FCRL1 WILD-TYPE   27  139
     clus
vv    FCRL1 MUTATED FCRL1 WILD-TYPE
  NO              1              27
  YES             5             139

Clustering(253) Variable = SERPINB7 MUTATION ANALYSIS
D253V1, survival
                    sevent
clus2                 0  1
  SERPINB7 MUTATED    3  2
  SERPINB7 WILD-TYPE 96 48
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 5                144 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 2                 48 
$`SERPINB7 MUTATED`
TCGA-05-4382 TCGA-05-4420 TCGA-49-4506 TCGA-50-6590 TCGA-64-1678 
       19.92        29.95        32.84        42.31        39.09 

$`SERPINB7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       28.57        12.66        35.54        46.72        14.07         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             19.92               0.07 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             42.31              85.32 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
             32.84              13.07 
[1] "19.9 - 42.3 (32.8)" "0.1 - 85.3 (13.1)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINB7 WILD-TYPE"   "SERPINB7 MUTATED" "SERPINB7 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINB7 WILD-TYPE" "SERPINB7 WILD-TYPE" 
[1] "hr=" "1.4"
D253V2, continuous
D253V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB7 MUTATED      3    3
  SERPINB7 WILD-TYPE   90   76
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  FEMALE                3                 90
  MALE                  3                 76
D253V4, continuous
D253V5, multiclass
D253V6, multiclass
    clus
vv   SERPINB7 MUTATED SERPINB7 WILD-TYPE
  T1                0                 41
  T2                6                102
  T3                0                 14
  T4                0                  8
D253V7, multiclass
       clus
vv      SERPINB7 MUTATED SERPINB7 WILD-TYPE
  N0                   4                 91
  N1                   2                 35
  N2+N3                0                 35
D253V8, multiclass
    clus
vv   SERPINB7 MUTATED SERPINB7 WILD-TYPE
  M0                6                131
  M1                0                  9
  MX                0                 22
D253V9, multiclass
     clus
vv    SERPINB7 MUTATED SERPINB7 WILD-TYPE
  I                  3                 85
  II                 3                 30
  III                0                 39
  IV                 0                  9
D253V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB7 MUTATED      0    6
  SERPINB7 WILD-TYPE   16  150
     clus
vv    SERPINB7 MUTATED SERPINB7 WILD-TYPE
  NO                 0                 16
  YES                6                150
D253V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINB7 MUTATED      2    4
  SERPINB7 WILD-TYPE   26  140
     clus
vv    SERPINB7 MUTATED SERPINB7 WILD-TYPE
  NO                 2                 26
  YES                4                140

Clustering(254) Variable = SULT1B1 MUTATION ANALYSIS
D254V1, survival
                   sevent
clus2                0  1
  SULT1B1 MUTATED    3  4
  SULT1B1 WILD-TYPE 96 46
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                7               142 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
                4                46 
$`SULT1B1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 TCGA-05-4434 TCGA-38-4625 TCGA-44-6778 
       37.02         9.96         2.96        15.02        47.61        36.49 
TCGA-55-1592 
       23.05 

$`SULT1B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 
       38.07         3.98        19.92        14.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       26.01        26.01        25.02        25.02        24.00         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61         5.19        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
             2.96              0.07 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            47.61             85.32 
  SULT1B1 MUTATED SULT1B1 WILD-TYPE 
            23.05             13.15 
[1] "3.0 - 47.6 (23.1)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "SULT1B1 MUTATED"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE"   "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "SULT1B1 MUTATED" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" "SULT1B1 WILD-TYPE" 
       TCGA-91-6836 
"SULT1B1 WILD-TYPE" 
[1] "hr=" "1.4"
D254V2, continuous
D254V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      3    4
  SULT1B1 WILD-TYPE   90   75
        clus
vv       SULT1B1 MUTATED SULT1B1 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D254V4, continuous
D254V5, multiclass
D254V6, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  T1               1                40
  T2               3               105
  T3               0                14
  T4               3                 5
D254V7, multiclass
       clus
vv      SULT1B1 MUTATED SULT1B1 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               1                34
D254V8, multiclass
    clus
vv   SULT1B1 MUTATED SULT1B1 WILD-TYPE
  M0               5               132
  M1               1                 8
  MX               1                21
D254V9, multiclass
     clus
vv    SULT1B1 MUTATED SULT1B1 WILD-TYPE
  I                 4                84
  II                0                33
  III               2                37
  IV                1                 8
D254V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      0    7
  SULT1B1 WILD-TYPE   16  149
     clus
vv    SULT1B1 MUTATED SULT1B1 WILD-TYPE
  NO                0                16
  YES               7               149
D254V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1B1 MUTATED      0    7
  SULT1B1 WILD-TYPE   28  137
     clus
vv    SULT1B1 MUTATED SULT1B1 WILD-TYPE
  NO                0                28
  YES               7               137

Clustering(255) Variable = CKAP2L MUTATION ANALYSIS
D255V1, survival
                  sevent
clus2               0  1
  CKAP2L MUTATED    2  4
  CKAP2L WILD-TYPE 97 46
  CKAP2L MUTATED CKAP2L WILD-TYPE 
               6              143 
  CKAP2L MUTATED CKAP2L WILD-TYPE 
               4               46 
$`CKAP2L MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-49-4510 TCGA-50-5068 TCGA-50-6590 
        9.96        26.01        25.02        29.46        49.28        42.31 

$`CKAP2L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  CKAP2L MUTATED CKAP2L WILD-TYPE 
            9.96             0.07 
  CKAP2L MUTATED CKAP2L WILD-TYPE 
           49.28            85.32 
  CKAP2L MUTATED CKAP2L WILD-TYPE 
          27.735           13.150 
[1] "10.0 - 49.3 (27.7)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6836 
"CKAP2L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6836 
"CKAP2L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE"   "CKAP2L MUTATED" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
  "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"CKAP2L WILD-TYPE"   "CKAP2L MUTATED" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" "CKAP2L WILD-TYPE" 
      TCGA-91-6836 
"CKAP2L WILD-TYPE" 
[1] "hr=" "1.3"
D255V2, continuous
D255V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CKAP2L MUTATED      4    2
  CKAP2L WILD-TYPE   89   77
        clus
vv       CKAP2L MUTATED CKAP2L WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D255V4, continuous
D255V5, multiclass
D255V6, multiclass
    clus
vv   CKAP2L MUTATED CKAP2L WILD-TYPE
  T1              0               41
  T2              5              103
  T3              0               14
  T4              1                7
D255V7, multiclass
       clus
vv      CKAP2L MUTATED CKAP2L WILD-TYPE
  N0                 1               94
  N1                 5               32
  N2+N3              0               35
D255V8, multiclass
    clus
vv   CKAP2L MUTATED CKAP2L WILD-TYPE
  M0              5              132
  M1              0                9
  MX              1               21
D255V9, multiclass
     clus
vv    CKAP2L MUTATED CKAP2L WILD-TYPE
  I                1               87
  II               4               29
  III              1               38
  IV               0                9
D255V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CKAP2L MUTATED      0    6
  CKAP2L WILD-TYPE   16  150
     clus
vv    CKAP2L MUTATED CKAP2L WILD-TYPE
  NO               0               16
  YES              6              150
D255V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CKAP2L MUTATED      0    6
  CKAP2L WILD-TYPE   28  138
     clus
vv    CKAP2L MUTATED CKAP2L WILD-TYPE
  NO               0               28
  YES              6              138

Clustering(256) Variable = KLHL4 MUTATION ANALYSIS
D256V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    6  2
  KLHL4 WILD-TYPE 93 48
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              8             141 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              2              48 
$`KLHL4 MUTATED`
TCGA-05-4405 TCGA-05-5423 TCGA-38-4629 TCGA-44-6775 TCGA-50-5933 TCGA-55-6712 
       20.05         4.96        28.37         2.70        77.88         0.79 
TCGA-64-5815 TCGA-67-3771 
        7.33         1.97 

$`KLHL4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93         7.76         3.12         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       83.84         0.10        30.44        16.67        39.52         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.79            0.07 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          77.88           85.32 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          6.145          14.010 
[1] "0.8 - 77.9 (6.1)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-91-6836 
"KLHL4 WILD-TYPE" 
[1] "hr=" "1.5"
D256V2, continuous
D256V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      3    7
  KLHL4 WILD-TYPE   90   72
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             3              90
  MALE               7              72
D256V4, continuous
D256V5, multiclass
D256V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             1              40
  T2             7             101
  T3             1              13
  T4             1               7
D256V7, multiclass
       clus
vv      KLHL4 MUTATED KLHL4 WILD-TYPE
  N0                6              89
  N1                3              34
  N2+N3             1              34
D256V8, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D256V9, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               5              83
  II              3              30
  III             1              38
  IV              0               9
D256V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      1    9
  KLHL4 WILD-TYPE   15  147
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  NO              1              15
  YES             9             147
D256V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      1    9
  KLHL4 WILD-TYPE   27  135
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  NO              1              27
  YES             9             135

Clustering(257) Variable = CMA1 MUTATION ANALYSIS
D257V1, survival
                sevent
clus2             0  1
  CMA1 MUTATED    1  1
  CMA1 WILD-TYPE 98 49
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            147 
  CMA1 MUTATED CMA1 WILD-TYPE 
             1             49 
$`CMA1 MUTATED`
TCGA-05-4396 TCGA-64-1678 
        9.96        39.09 

$`CMA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  CMA1 MUTATED CMA1 WILD-TYPE 
          9.96           0.07 
  CMA1 MUTATED CMA1 WILD-TYPE 
         39.09          85.32 
  CMA1 MUTATED CMA1 WILD-TYPE 
        24.525         13.870 
[1] "10.0 - 39.1 (24.5)" "0.1 - 85.3 (13.9)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            147 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4397     TCGA-05-4398     TCGA-05-4402 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4415     TCGA-05-4417     TCGA-05-4418 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4424     TCGA-05-4426     TCGA-05-4427 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4432     TCGA-05-4433     TCGA-05-4434 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5429 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-3615     TCGA-35-4122     TCGA-35-4123 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-38-4626     TCGA-38-4627 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4628     TCGA-38-4629     TCGA-38-4630     TCGA-38-4631 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4632     TCGA-38-6178     TCGA-44-2655     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3396 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3398     TCGA-44-3918     TCGA-44-3919     TCGA-44-4112 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4486     TCGA-49-4487     TCGA-49-4488 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4490     TCGA-49-4494     TCGA-49-4501     TCGA-49-4505 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4512 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6745     TCGA-50-5044     TCGA-50-5045     TCGA-50-5049 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5055     TCGA-50-5066     TCGA-50-5068 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5930     TCGA-50-5931     TCGA-50-5932 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5933     TCGA-50-5935     TCGA-50-5936     TCGA-50-5939 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5941     TCGA-50-5942     TCGA-50-5944     TCGA-50-5946 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6590     TCGA-50-6591     TCGA-50-6592     TCGA-50-6593 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-50-6597     TCGA-55-1592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-55-5899 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6642     TCGA-55-6712     TCGA-64-1676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-64-5774     TCGA-64-5775 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3770     TCGA-67-3771     TCGA-67-3772     TCGA-67-3773 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3774     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4662 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4670     TCGA-73-4675 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4676     TCGA-73-4677     TCGA-91-6828     TCGA-91-6829 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
D257V2, continuous
D257V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      2    2
  CMA1 WILD-TYPE   91   77
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D257V4, continuous
D257V5, multiclass
D257V6, multiclass
    clus
vv   CMA1 MUTATED CMA1 WILD-TYPE
  T1            0             41
  T2            1            107
  T3            2             12
  T4            1              7
D257V7, multiclass
       clus
vv      CMA1 MUTATED CMA1 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            1             34
D257V8, multiclass
    clus
vv   CMA1 MUTATED CMA1 WILD-TYPE
  M0            4            133
  M1            0              9
  MX            0             22
D257V9, multiclass
     clus
vv    CMA1 MUTATED CMA1 WILD-TYPE
  I              1             87
  II             1             32
  III            2             37
  IV             0              9
D257V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      0    4
  CMA1 WILD-TYPE   16  152
     clus
vv    CMA1 MUTATED CMA1 WILD-TYPE
  NO             0             16
  YES            4            152
D257V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      1    3
  CMA1 WILD-TYPE   27  141
     clus
vv    CMA1 MUTATED CMA1 WILD-TYPE
  NO             1             27
  YES            3            141

Clustering(258) Variable = DCLK3 MUTATION ANALYSIS
D258V1, survival
                 sevent
clus2              0  1
  DCLK3 MUTATED    7  2
  DCLK3 WILD-TYPE 92 48
  DCLK3 MUTATED DCLK3 WILD-TYPE 
              9             140 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
              2              48 
$`DCLK3 MUTATED`
TCGA-05-4382 TCGA-05-4430 TCGA-05-4432 TCGA-38-4625 TCGA-44-2657 TCGA-44-6147 
       19.92        25.02        25.02        47.61        13.15         7.76 
TCGA-44-6777 TCGA-50-5066 TCGA-91-6829 
       32.45         9.76        41.33 

$`DCLK3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
       29.95        30.02        26.01        26.01        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
        3.48         6.84         0.30         3.35         9.93         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42         2.70        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        0.46         1.32         4.01         1.25         1.22         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  DCLK3 MUTATED DCLK3 WILD-TYPE 
           7.76            0.07 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
          47.61           85.32 
  DCLK3 MUTATED DCLK3 WILD-TYPE 
          25.02           13.07 
[1] "7.8 - 47.6 (25.0)" "0.1 - 85.3 (13.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE"   "DCLK3 MUTATED" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DCLK3 WILD-TYPE"   "DCLK3 MUTATED" "DCLK3 WILD-TYPE" "DCLK3 WILD-TYPE" 
     TCGA-91-6836 
"DCLK3 WILD-TYPE" 
[1] "hr=" "1.8"
D258V2, continuous
D258V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCLK3 MUTATED      5    5
  DCLK3 WILD-TYPE   88   74
        clus
vv       DCLK3 MUTATED DCLK3 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D258V4, continuous
D258V5, multiclass
D258V6, multiclass
    clus
vv   DCLK3 MUTATED DCLK3 WILD-TYPE
  T1             2              39
  T2             8             100
  T3             0              14
  T4             0               8
D258V7, multiclass
       clus
vv      DCLK3 MUTATED DCLK3 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             0              35
D258V8, multiclass
    clus
vv   DCLK3 MUTATED DCLK3 WILD-TYPE
  M0             8             129
  M1             0               9
  MX             2              20
D258V9, multiclass
     clus
vv    DCLK3 MUTATED DCLK3 WILD-TYPE
  I               8              80
  II              2              31
  III             0              39
  IV              0               9
D258V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCLK3 MUTATED      1    9
  DCLK3 WILD-TYPE   15  147
     clus
vv    DCLK3 MUTATED DCLK3 WILD-TYPE
  NO              1              15
  YES             9             147
D258V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DCLK3 MUTATED      0   10
  DCLK3 WILD-TYPE   28  134
     clus
vv    DCLK3 MUTATED DCLK3 WILD-TYPE
  NO              0              28
  YES            10             134

Clustering(259) Variable = OR6K6 MUTATION ANALYSIS
D259V1, survival
                 sevent
clus2              0  1
  OR6K6 MUTATED    5  3
  OR6K6 WILD-TYPE 94 47
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              8             141 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
              3              47 
$`OR6K6 MUTATED`
TCGA-05-4398 TCGA-38-4629 TCGA-38-4632 TCGA-44-2655 TCGA-44-2657 TCGA-44-3918 
       47.05        28.37        44.61        18.87        13.15         6.44 
TCGA-50-6592 TCGA-91-6828 
       25.51         1.22 

$`OR6K6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        35.28        11.64         5.19 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 
       15.35         0.46         1.32         4.01         1.25        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  OR6K6 MUTATED OR6K6 WILD-TYPE 
           1.22            0.07 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
          47.05           85.32 
  OR6K6 MUTATED OR6K6 WILD-TYPE 
          22.19           13.15 
[1] "1.2 - 47.0 (22.2)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" "OR6K6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE"   "OR6K6 MUTATED" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
  "OR6K6 MUTATED" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" "OR6K6 WILD-TYPE" 
     TCGA-91-6836 
"OR6K6 WILD-TYPE" 
[1] "hr=" "1"  
D259V2, continuous
D259V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K6 MUTATED      5    3
  OR6K6 WILD-TYPE   88   76
        clus
vv       OR6K6 MUTATED OR6K6 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D259V4, continuous
D259V5, multiclass
D259V6, multiclass
    clus
vv   OR6K6 MUTATED OR6K6 WILD-TYPE
  T1             3              38
  T2             3             105
  T3             1              13
  T4             1               7
D259V7, multiclass
       clus
vv      OR6K6 MUTATED OR6K6 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             1              34
D259V8, multiclass
    clus
vv   OR6K6 MUTATED OR6K6 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             1              21
D259V9, multiclass
     clus
vv    OR6K6 MUTATED OR6K6 WILD-TYPE
  I               5              83
  II              1              32
  III             1              38
  IV              1               8
D259V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K6 MUTATED      0    8
  OR6K6 WILD-TYPE   16  148
     clus
vv    OR6K6 MUTATED OR6K6 WILD-TYPE
  NO              0              16
  YES             8             148
D259V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K6 MUTATED      0    8
  OR6K6 WILD-TYPE   28  136
     clus
vv    OR6K6 MUTATED OR6K6 WILD-TYPE
  NO              0              28
  YES             8             136

Clustering(260) Variable = SGIP1 MUTATION ANALYSIS
D260V1, survival
                 sevent
clus2              0  1
  SGIP1 MUTATED    8  1
  SGIP1 WILD-TYPE 91 49
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              9             140 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              1              49 
$`SGIP1 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-5423 TCGA-44-3918 TCGA-44-4112 TCGA-55-5899 
        9.96        47.05         4.96         6.44         4.60         2.86 
TCGA-64-1676 TCGA-64-5778 TCGA-91-6836 
       56.81        30.44         0.36 

$`SGIP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        0.10        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 
        1.28         1.15 

  SGIP1 MUTATED SGIP1 WILD-TYPE 
           0.36            0.07 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
          56.81           85.32 
  SGIP1 MUTATED SGIP1 WILD-TYPE 
           6.44           14.04 
[1] "0.4 - 56.8 (6.4)"  "0.1 - 85.3 (14.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "SGIP1 MUTATED" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE"   "SGIP1 MUTATED" "SGIP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-91-6836 
  "SGIP1 MUTATED" 
[1] "hr=" "3.1"
D260V2, continuous
D260V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGIP1 MUTATED      6    5
  SGIP1 WILD-TYPE   87   74
        clus
vv       SGIP1 MUTATED SGIP1 WILD-TYPE
  FEMALE             6              87
  MALE               5              74
D260V4, continuous
[1] "Remove cluster labels:" "SGIP1 MUTATED"         
clus
  SGIP1 MUTATED SGIP1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" "SGIP1 WILD-TYPE" 
D260V5, multiclass
D260V6, multiclass
    clus
vv   SGIP1 MUTATED SGIP1 WILD-TYPE
  T1             3              38
  T2             4             104
  T3             2              12
  T4             2               6
D260V7, multiclass
       clus
vv      SGIP1 MUTATED SGIP1 WILD-TYPE
  N0                6              89
  N1                3              34
  N2+N3             2              33
D260V8, multiclass
    clus
vv   SGIP1 MUTATED SGIP1 WILD-TYPE
  M0             9             128
  M1             0               9
  MX             2              20
D260V9, multiclass
     clus
vv    SGIP1 MUTATED SGIP1 WILD-TYPE
  I               6              82
  II              2              31
  III             3              36
  IV              0               9
D260V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGIP1 MUTATED      0   11
  SGIP1 WILD-TYPE   16  145
     clus
vv    SGIP1 MUTATED SGIP1 WILD-TYPE
  NO              0              16
  YES            11             145
D260V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SGIP1 MUTATED      1   10
  SGIP1 WILD-TYPE   27  134
     clus
vv    SGIP1 MUTATED SGIP1 WILD-TYPE
  NO              1              27
  YES            10             134

Clustering(261) Variable = GUCA1C MUTATION ANALYSIS
D261V1, survival
                  sevent
clus2               0  1
  GUCA1C MUTATED    2  1
  GUCA1C WILD-TYPE 97 49
  GUCA1C MUTATED GUCA1C WILD-TYPE 
               3              146 
  GUCA1C MUTATED GUCA1C WILD-TYPE 
               1               49 
$`GUCA1C MUTATED`
TCGA-05-4418 TCGA-49-6743 TCGA-64-5778 
        8.98        12.13        30.44 

$`GUCA1C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        83.84         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  GUCA1C MUTATED GUCA1C WILD-TYPE 
            8.98             0.07 
  GUCA1C MUTATED GUCA1C WILD-TYPE 
           30.44            85.32 
  GUCA1C MUTATED GUCA1C WILD-TYPE 
           12.13            13.94 
[1] "9.0 - 30.4 (12.1)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GUCA1C MUTATED" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" "GUCA1C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6836 
"GUCA1C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GUCA1C MUTATED" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" "GUCA1C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6836 
"GUCA1C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
  "GUCA1C MUTATED" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE"   "GUCA1C MUTATED" "GUCA1C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-91-6836 
"GUCA1C WILD-TYPE" 
[1] "hr=" "1.3"
D261V2, continuous
D261V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GUCA1C MUTATED      1    2
  GUCA1C WILD-TYPE   92   77
        clus
vv       GUCA1C MUTATED GUCA1C WILD-TYPE
  FEMALE              1               92
  MALE                2               77
D261V4, continuous
[1] "Remove cluster labels:" "GUCA1C MUTATED"        
clus
  GUCA1C MUTATED GUCA1C WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" "GUCA1C WILD-TYPE" 
D261V5, multiclass
D261V6, multiclass
    clus
vv   GUCA1C MUTATED GUCA1C WILD-TYPE
  T1              1               40
  T2              1              107
  T3              1               13
  T4              0                8
D261V7, multiclass
       clus
vv      GUCA1C MUTATED GUCA1C WILD-TYPE
  N0                 1               94
  N1                 0               37
  N2+N3              2               33
D261V8, multiclass
    clus
vv   GUCA1C MUTATED GUCA1C WILD-TYPE
  M0              2              135
  M1              0                9
  MX              1               21
D261V9, multiclass
     clus
vv    GUCA1C MUTATED GUCA1C WILD-TYPE
  I                1               87
  II               0               33
  III              2               37
  IV               0                9
D261V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GUCA1C MUTATED      0    3
  GUCA1C WILD-TYPE   16  153
     clus
vv    GUCA1C MUTATED GUCA1C WILD-TYPE
  NO               0               16
  YES              3              153
D261V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GUCA1C MUTATED      1    2
  GUCA1C WILD-TYPE   27  142
     clus
vv    GUCA1C MUTATED GUCA1C WILD-TYPE
  NO               1               27
  YES              2              142

Clustering(262) Variable = HAX1 MUTATION ANALYSIS
D262V1, survival
                sevent
clus2             0  1
  HAX1 MUTATED    3  1
  HAX1 WILD-TYPE 96 49
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            145 
  HAX1 MUTATED HAX1 WILD-TYPE 
             1             49 
$`HAX1 MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-44-5645 TCGA-91-6836 
        9.96        47.61         6.84         0.36 

$`HAX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         3.48         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 
        1.15 

  HAX1 MUTATED HAX1 WILD-TYPE 
          0.36           0.07 
  HAX1 MUTATED HAX1 WILD-TYPE 
         47.61          85.32 
  HAX1 MUTATED HAX1 WILD-TYPE 
          8.40          14.01 
[1] "0.4 - 47.6 (8.4)"  "0.1 - 85.3 (14.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6836 
  "HAX1 MUTATED" 
[1] "hr=" "1.1"
D262V2, continuous
D262V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      3    1
  HAX1 WILD-TYPE   90   78
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D262V4, continuous
D262V5, multiclass
D262V6, multiclass
    clus
vv   HAX1 MUTATED HAX1 WILD-TYPE
  T1            0             41
  T2            2            106
  T3            0             14
  T4            1              7
D262V7, multiclass
       clus
vv      HAX1 MUTATED HAX1 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            0             35
D262V8, multiclass
    clus
vv   HAX1 MUTATED HAX1 WILD-TYPE
  M0            2            135
  M1            0              9
  MX            1             21
D262V9, multiclass
     clus
vv    HAX1 MUTATED HAX1 WILD-TYPE
  I              3             85
  II             0             33
  III            1             38
  IV             0              9
D262V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      0    4
  HAX1 WILD-TYPE   16  152
     clus
vv    HAX1 MUTATED HAX1 WILD-TYPE
  NO             0             16
  YES            4            152
D262V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      0    4
  HAX1 WILD-TYPE   28  140
     clus
vv    HAX1 MUTATED HAX1 WILD-TYPE
  NO             0             28
  YES            4            140

Clustering(263) Variable = ZBBX MUTATION ANALYSIS
D263V1, survival
                sevent
clus2             0  1
  ZBBX MUTATED    5  4
  ZBBX WILD-TYPE 94 46
  ZBBX MUTATED ZBBX WILD-TYPE 
             9            140 
  ZBBX MUTATED ZBBX WILD-TYPE 
             4             46 
$`ZBBX MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-38-4632 TCGA-44-2657 TCGA-44-2662 TCGA-49-4488 
       38.07        19.92        44.61        13.15        15.78        28.57 
TCGA-49-4507 TCGA-55-1592 TCGA-64-1676 
        8.81        23.05        56.81 

$`ZBBX WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       18.87        19.10        17.39         3.39        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 
       25.51        11.05        12.16         6.21        33.37        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  ZBBX MUTATED ZBBX WILD-TYPE 
          8.81           0.07 
  ZBBX MUTATED ZBBX WILD-TYPE 
         56.81          85.32 
  ZBBX MUTATED ZBBX WILD-TYPE 
        23.050         12.825 
[1] "8.8 - 56.8 (23.1)" "0.1 - 85.3 (12.8)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "ZBBX MUTATED" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-05-4390     TCGA-05-4396     TCGA-05-4397     TCGA-05-4398 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4405     TCGA-05-4415     TCGA-05-4417 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4424     TCGA-05-4426 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774     TCGA-67-6215 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-91-6836 
"ZBBX WILD-TYPE" 
[1] "hr=" "1.1"
D263V2, continuous
D263V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      4    6
  ZBBX WILD-TYPE   89   73
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  FEMALE            4             89
  MALE              6             73
D263V4, continuous
D263V5, multiclass
D263V6, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  T1            2             39
  T2            6            102
  T3            2             12
  T4            0              8
D263V7, multiclass
       clus
vv      ZBBX MUTATED ZBBX WILD-TYPE
  N0               6             89
  N1               2             35
  N2+N3            1             34
D263V8, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  M0            8            129
  M1            1              8
  MX            1             21
D263V9, multiclass
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  I              7             81
  II             0             33
  III            2             37
  IV             1              8
D263V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      1    9
  ZBBX WILD-TYPE   15  147
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             1             15
  YES            9            147
D263V11, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      2    8
  ZBBX WILD-TYPE   26  136
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             2             26
  YES            8            136

Clustering(264) Variable = PPAN-P2RY11 MUTATION ANALYSIS
D264V1, survival
                       sevent
clus2                    0  1
  PPAN-P2RY11 MUTATED    2  1
  PPAN-P2RY11 WILD-TYPE 97 49
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                    3                   146 
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                    1                    49 
$`PPAN-P2RY11 MUTATED`
TCGA-44-2657 TCGA-49-4488 TCGA-55-6712 
       13.15        28.57         0.79 

$`PPAN-P2RY11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61         5.19        18.87        19.10        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 
       48.62        45.17         2.86         0.07        32.61        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                 0.79                  0.07 
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                28.57                 85.32 
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                13.15                 13.94 
[1] "0.8 - 28.6 (13.2)" "0.1 - 85.3 (13.9)"
           TCGA-05-4249            TCGA-05-4250            TCGA-05-4382 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4384            TCGA-05-4390            TCGA-05-4396 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4397            TCGA-05-4398            TCGA-05-4402 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4405            TCGA-05-4415            TCGA-05-4417 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4418            TCGA-05-4420            TCGA-05-4424 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4426            TCGA-05-4427            TCGA-05-4430 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4432            TCGA-05-4433            TCGA-05-4434 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5420            TCGA-05-5423            TCGA-05-5425 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5429            TCGA-05-5715            TCGA-35-3615 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-35-4122            TCGA-35-4123            TCGA-35-5375 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4625            TCGA-38-4626            TCGA-38-4627 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4628            TCGA-38-4629            TCGA-38-4630 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4631            TCGA-38-4632            TCGA-38-6178 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2655            TCGA-44-2656            TCGA-44-2657 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-44-2659            TCGA-44-2661            TCGA-44-2662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2665            TCGA-44-2666            TCGA-44-2668 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3396            TCGA-44-3398            TCGA-44-3918 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3919            TCGA-44-4112            TCGA-44-5643 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-5645            TCGA-44-6144            TCGA-44-6145 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6146            TCGA-44-6147            TCGA-44-6148 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6774            TCGA-44-6775            TCGA-44-6776 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6777            TCGA-44-6778            TCGA-44-6779 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4486            TCGA-49-4487            TCGA-49-4488 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-49-4490            TCGA-49-4494            TCGA-49-4501 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4505            TCGA-49-4506            TCGA-49-4507 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4510            TCGA-49-4512            TCGA-49-4514 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6742            TCGA-49-6743            TCGA-49-6744 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6745            TCGA-50-5044            TCGA-50-5045 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5049            TCGA-50-5051            TCGA-50-5055 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5066            TCGA-50-5068            TCGA-50-5072 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5930            TCGA-50-5931            TCGA-50-5932 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5933            TCGA-50-5935            TCGA-50-5936 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5939            TCGA-50-5941            TCGA-50-5942 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5944            TCGA-50-5946            TCGA-50-6590 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6591            TCGA-50-6592            TCGA-50-6593 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6594            TCGA-50-6595            TCGA-50-6597 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1592            TCGA-55-1594            TCGA-55-1595 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1596            TCGA-55-5899            TCGA-55-6543 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-6642            TCGA-55-6712            TCGA-64-1676 
"PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-1677            TCGA-64-1678            TCGA-64-1680 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5774            TCGA-64-5775            TCGA-64-5778 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5779            TCGA-64-5781            TCGA-64-5815 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3770            TCGA-67-3771            TCGA-67-3772 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3773            TCGA-67-3774            TCGA-67-6215 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-6216            TCGA-67-6217            TCGA-71-6725 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4658            TCGA-73-4659            TCGA-73-4662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4666            TCGA-73-4668            TCGA-73-4670 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4675            TCGA-73-4676            TCGA-73-4677 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6828            TCGA-91-6829            TCGA-91-6831 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6835            TCGA-91-6836 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4249            TCGA-05-4250            TCGA-05-4382 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4384            TCGA-05-4390            TCGA-05-4396 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4397            TCGA-05-4398            TCGA-05-4402 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4405            TCGA-05-4415            TCGA-05-4417 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4418            TCGA-05-4420            TCGA-05-4424 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4426            TCGA-05-4427            TCGA-05-4430 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4432            TCGA-05-4433            TCGA-05-4434 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5420            TCGA-05-5423            TCGA-05-5425 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5429            TCGA-05-5715            TCGA-35-3615 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-35-4122            TCGA-35-4123            TCGA-35-5375 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4625            TCGA-38-4626            TCGA-38-4627 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4628            TCGA-38-4629            TCGA-38-4630 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4631            TCGA-38-4632            TCGA-38-6178 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2655            TCGA-44-2656            TCGA-44-2657 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-44-2659            TCGA-44-2661            TCGA-44-2662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2665            TCGA-44-2666            TCGA-44-2668 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3396            TCGA-44-3398            TCGA-44-3918 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3919            TCGA-44-4112            TCGA-44-5643 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-5645            TCGA-44-6144            TCGA-44-6145 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6146            TCGA-44-6147            TCGA-44-6148 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6774            TCGA-44-6775            TCGA-44-6776 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6777            TCGA-44-6778            TCGA-44-6779 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4486            TCGA-49-4487            TCGA-49-4488 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-49-4490            TCGA-49-4494            TCGA-49-4501 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4505            TCGA-49-4506            TCGA-49-4507 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4510            TCGA-49-4512            TCGA-49-4514 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6742            TCGA-49-6743            TCGA-49-6744 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6745            TCGA-50-5044            TCGA-50-5045 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5049            TCGA-50-5051            TCGA-50-5055 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5066            TCGA-50-5068            TCGA-50-5072 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5930            TCGA-50-5931            TCGA-50-5932 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5933            TCGA-50-5935            TCGA-50-5936 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5939            TCGA-50-5941            TCGA-50-5942 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5944            TCGA-50-5946            TCGA-50-6590 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6591            TCGA-50-6592            TCGA-50-6593 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6594            TCGA-50-6595            TCGA-50-6597 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1592            TCGA-55-1594            TCGA-55-1595 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1596            TCGA-55-5899            TCGA-55-6543 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-6642            TCGA-55-6712            TCGA-64-1676 
"PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-1677            TCGA-64-1678            TCGA-64-1680 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5774            TCGA-64-5775            TCGA-64-5778 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5779            TCGA-64-5781            TCGA-64-5815 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3770            TCGA-67-3771            TCGA-67-3772 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3773            TCGA-67-3774            TCGA-67-6215 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-6216            TCGA-67-6217            TCGA-71-6725 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4658            TCGA-73-4659            TCGA-73-4662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4666            TCGA-73-4668            TCGA-73-4670 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4675            TCGA-73-4676            TCGA-73-4677 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6828            TCGA-91-6829            TCGA-91-6831 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6835            TCGA-91-6836 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4249            TCGA-05-4250            TCGA-05-4382 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4384            TCGA-05-4390            TCGA-05-4396 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4397            TCGA-05-4398            TCGA-05-4402 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4405            TCGA-05-4415            TCGA-05-4417 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4418            TCGA-05-4420            TCGA-05-4424 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4426            TCGA-05-4427            TCGA-05-4430 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4432            TCGA-05-4433            TCGA-05-4434 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5420            TCGA-05-5423            TCGA-05-5425 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5429            TCGA-05-5715            TCGA-35-3615 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-35-4122            TCGA-35-4123            TCGA-35-5375 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4625            TCGA-38-4626            TCGA-38-4627 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4628            TCGA-38-4629            TCGA-38-4630 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4631            TCGA-38-4632            TCGA-38-6178 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2655            TCGA-44-2656            TCGA-44-2657 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-44-2659            TCGA-44-2661            TCGA-44-2662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2665            TCGA-44-2666            TCGA-44-2668 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3396            TCGA-44-3398            TCGA-44-3918 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3919            TCGA-44-4112            TCGA-44-5643 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-5645            TCGA-44-6144            TCGA-44-6145 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6146            TCGA-44-6147            TCGA-44-6148 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6774            TCGA-44-6775            TCGA-44-6776 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6777            TCGA-44-6778            TCGA-44-6779 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4486            TCGA-49-4487            TCGA-49-4488 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" 
           TCGA-49-4490            TCGA-49-4494            TCGA-49-4501 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4505            TCGA-49-4506            TCGA-49-4507 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4510            TCGA-49-4512            TCGA-49-4514 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6742            TCGA-49-6743            TCGA-49-6744 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6745            TCGA-50-5044            TCGA-50-5045 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5049            TCGA-50-5051            TCGA-50-5055 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5066            TCGA-50-5068            TCGA-50-5072 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5930            TCGA-50-5931            TCGA-50-5932 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5933            TCGA-50-5935            TCGA-50-5936 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5939            TCGA-50-5941            TCGA-50-5942 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5944            TCGA-50-5946            TCGA-50-6590 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6591            TCGA-50-6592            TCGA-50-6593 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6594            TCGA-50-6595            TCGA-50-6597 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1592            TCGA-55-1594            TCGA-55-1595 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-1596            TCGA-55-5899            TCGA-55-6543 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-6642            TCGA-55-6712            TCGA-64-1676 
"PPAN-P2RY11 WILD-TYPE"   "PPAN-P2RY11 MUTATED" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-1677            TCGA-64-1678            TCGA-64-1680 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5774            TCGA-64-5775            TCGA-64-5778 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5779            TCGA-64-5781            TCGA-64-5815 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3770            TCGA-67-3771            TCGA-67-3772 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3773            TCGA-67-3774            TCGA-67-6215 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-6216            TCGA-67-6217            TCGA-71-6725 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4658            TCGA-73-4659            TCGA-73-4662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4666            TCGA-73-4668            TCGA-73-4670 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4675            TCGA-73-4676            TCGA-73-4677 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6828            TCGA-91-6829            TCGA-91-6831 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6835            TCGA-91-6836 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
[1] "hr=" "1.6"
D264V2, continuous
[1] "Remove cluster labels:" "PPAN-P2RY11 MUTATED"   
clus
  PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE 
                    2                   153 
           TCGA-05-4244            TCGA-05-4249            TCGA-05-4250 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4382            TCGA-05-4384            TCGA-05-4389 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4390            TCGA-05-4395            TCGA-05-4396 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4397            TCGA-05-4398            TCGA-05-4402 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4403            TCGA-05-4405            TCGA-05-4410 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4415            TCGA-05-4417            TCGA-05-4418 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4420            TCGA-05-4422            TCGA-05-4424 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4425            TCGA-05-4426            TCGA-05-4427 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4430            TCGA-05-4432            TCGA-05-4433 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-4434            TCGA-05-5420            TCGA-05-5423 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5425            TCGA-05-5428            TCGA-05-5429 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-05-5715            TCGA-35-3615            TCGA-35-4122 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-35-4123            TCGA-35-5375            TCGA-38-4625 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4626            TCGA-38-4627            TCGA-38-4628 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4629            TCGA-38-4630            TCGA-38-4631 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-38-4632            TCGA-38-6178            TCGA-44-2655 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2656            TCGA-44-2659            TCGA-44-2661 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2662            TCGA-44-2665            TCGA-44-2666 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-2668            TCGA-44-3396            TCGA-44-3398 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-3918            TCGA-44-3919            TCGA-44-4112 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-5643            TCGA-44-5645            TCGA-44-6144 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6145            TCGA-44-6146            TCGA-44-6147 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6148            TCGA-44-6774            TCGA-44-6775 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6776            TCGA-44-6777            TCGA-44-6778 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-44-6779            TCGA-49-4486            TCGA-49-4487 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4490            TCGA-49-4494            TCGA-49-4501 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4505            TCGA-49-4506            TCGA-49-4507 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-4510            TCGA-49-4512            TCGA-49-4514 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6742            TCGA-49-6743            TCGA-49-6744 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-49-6745            TCGA-49-6767            TCGA-50-5044 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5045            TCGA-50-5049            TCGA-50-5051 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5055            TCGA-50-5066            TCGA-50-5068 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5072            TCGA-50-5930            TCGA-50-5931 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5932            TCGA-50-5933            TCGA-50-5935 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5936            TCGA-50-5939            TCGA-50-5941 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-5942            TCGA-50-5944            TCGA-50-5946 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6590            TCGA-50-6591            TCGA-50-6592 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6593            TCGA-50-6594            TCGA-50-6595 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-50-6597            TCGA-55-1594            TCGA-55-1596 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-55-6642            TCGA-64-1676            TCGA-64-1677 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-1678            TCGA-64-1680            TCGA-64-5774 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5775            TCGA-64-5778            TCGA-64-5779 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-64-5781            TCGA-64-5815            TCGA-67-3770 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3771            TCGA-67-3772            TCGA-67-3773 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-3774            TCGA-67-4679            TCGA-67-6215 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-67-6216            TCGA-67-6217            TCGA-71-6725 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4658            TCGA-73-4659            TCGA-73-4662 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4666            TCGA-73-4668            TCGA-73-4670 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-73-4675            TCGA-73-4676            TCGA-73-4677 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-86-6562            TCGA-91-6828            TCGA-91-6829 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
           TCGA-91-6831            TCGA-91-6835            TCGA-91-6836 
"PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" "PPAN-P2RY11 WILD-TYPE" 
D264V3, binary
[1] "tbl2"
                       cls
clus                    [,1] [,2]
  PPAN-P2RY11 MUTATED      3    1
  PPAN-P2RY11 WILD-TYPE   90   78
        clus
vv       PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  FEMALE                   3                    90
  MALE                     1                    78
D264V4, continuous
D264V5, multiclass
D264V6, multiclass
    clus
vv   PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  T1                   1                    40
  T2                   3                   105
  T3                   0                    14
  T4                   0                     8
D264V7, multiclass
       clus
vv      PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  N0                      2                    93
  N1                      1                    36
  N2+N3                   0                    35
D264V8, multiclass
    clus
vv   PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  M0                   2                   135
  M1                   0                     9
  MX                   2                    20
D264V9, multiclass
     clus
vv    PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  I                     3                    85
  II                    0                    33
  III                   0                    39
  IV                    0                     9
D264V10, binary
[1] "tbl2"
                       cls
clus                    [,1] [,2]
  PPAN-P2RY11 MUTATED      0    4
  PPAN-P2RY11 WILD-TYPE   16  152
     clus
vv    PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  NO                    0                    16
  YES                   4                   152
D264V11, binary
[1] "tbl2"
                       cls
clus                    [,1] [,2]
  PPAN-P2RY11 MUTATED      0    4
  PPAN-P2RY11 WILD-TYPE   28  140
     clus
vv    PPAN-P2RY11 MUTATED PPAN-P2RY11 WILD-TYPE
  NO                    0                    28
  YES                   4                   140

Clustering(265) Variable = OR4C12 MUTATION ANALYSIS
D265V1, survival
                  sevent
clus2               0  1
  OR4C12 MUTATED    3  1
  OR4C12 WILD-TYPE 96 49
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               4              145 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               1               49 
$`OR4C12 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-73-4668 
        9.96        14.93        29.95        15.35 

$`OR4C12 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR4C12 MUTATED OR4C12 WILD-TYPE 
            9.96             0.07 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
           29.95            85.32 
  OR4C12 MUTATED OR4C12 WILD-TYPE 
           15.14            13.15 
[1] "10.0 - 29.9 (15.1)" "0.1 - 85.3 (13.2)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"OR4C12 WILD-TYPE"   "OR4C12 MUTATED" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE"   "OR4C12 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-91-6836 
"OR4C12 WILD-TYPE" 
[1] "hr=" "1"  
D265V2, continuous
D265V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C12 MUTATED      2    3
  OR4C12 WILD-TYPE   91   76
        clus
vv       OR4C12 MUTATED OR4C12 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D265V4, continuous
[1] "Remove cluster labels:" "OR4C12 MUTATED"        
clus
  OR4C12 MUTATED OR4C12 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" "OR4C12 WILD-TYPE" 
D265V5, multiclass
D265V6, multiclass
    clus
vv   OR4C12 MUTATED OR4C12 WILD-TYPE
  T1              0               41
  T2              4              104
  T3              0               14
  T4              1                7
D265V7, multiclass
       clus
vv      OR4C12 MUTATED OR4C12 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              0               35
D265V8, multiclass
    clus
vv   OR4C12 MUTATED OR4C12 WILD-TYPE
  M0              5              132
  M1              0                9
  MX              0               22
D265V9, multiclass
     clus
vv    OR4C12 MUTATED OR4C12 WILD-TYPE
  I                2               86
  II               2               31
  III              1               38
  IV               0                9
D265V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C12 MUTATED      0    5
  OR4C12 WILD-TYPE   16  151
     clus
vv    OR4C12 MUTATED OR4C12 WILD-TYPE
  NO               0               16
  YES              5              151
D265V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C12 MUTATED      1    4
  OR4C12 WILD-TYPE   27  140
     clus
vv    OR4C12 MUTATED OR4C12 WILD-TYPE
  NO               1               27
  YES              4              140

Clustering(266) Variable = TAAR2 MUTATION ANALYSIS
D266V1, survival
                 sevent
clus2              0  1
  TAAR2 MUTATED    3  2
  TAAR2 WILD-TYPE 96 48
  TAAR2 MUTATED TAAR2 WILD-TYPE 
              5             144 
  TAAR2 MUTATED TAAR2 WILD-TYPE 
              2              48 
$`TAAR2 MUTATED`
TCGA-49-4505 TCGA-49-4514 TCGA-50-6590 TCGA-55-5899 TCGA-64-5778 
       14.07        43.20        42.31         2.86        30.44 

$`TAAR2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.99         4.93        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        83.84         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        0.89         0.69        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25         1.22        41.33         1.28         1.15         0.36 

  TAAR2 MUTATED TAAR2 WILD-TYPE 
           2.86            0.07 
  TAAR2 MUTATED TAAR2 WILD-TYPE 
          43.20           85.32 
  TAAR2 MUTATED TAAR2 WILD-TYPE 
          30.44           13.15 
[1] "2.9 - 43.2 (30.4)" "0.1 - 85.3 (13.2)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6836 
"TAAR2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6836 
"TAAR2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
  "TAAR2 MUTATED" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE"   "TAAR2 MUTATED" "TAAR2 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-91-6836 
"TAAR2 WILD-TYPE" 
[1] "hr=" "1.1"
D266V2, continuous
D266V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR2 MUTATED      3    2
  TAAR2 WILD-TYPE   90   77
        clus
vv       TAAR2 MUTATED TAAR2 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D266V4, continuous
[1] "Remove cluster labels:" "TAAR2 MUTATED"         
clus
  TAAR2 MUTATED TAAR2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" "TAAR2 WILD-TYPE" 
D266V5, multiclass
D266V6, multiclass
    clus
vv   TAAR2 MUTATED TAAR2 WILD-TYPE
  T1             2              39
  T2             3             105
  T3             0              14
  T4             0               8
D266V7, multiclass
       clus
vv      TAAR2 MUTATED TAAR2 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             0              35
D266V8, multiclass
    clus
vv   TAAR2 MUTATED TAAR2 WILD-TYPE
  M0             5             132
  M1             0               9
  MX             0              22
D266V9, multiclass
     clus
vv    TAAR2 MUTATED TAAR2 WILD-TYPE
  I               4              84
  II              1              32
  III             0              39
  IV              0               9
D266V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR2 MUTATED      0    5
  TAAR2 WILD-TYPE   16  151
     clus
vv    TAAR2 MUTATED TAAR2 WILD-TYPE
  NO              0              16
  YES             5             151
D266V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR2 MUTATED      0    5
  TAAR2 WILD-TYPE   28  139
     clus
vv    TAAR2 MUTATED TAAR2 WILD-TYPE
  NO              0              28
  YES             5             139

Clustering(267) Variable = OR10AG1 MUTATION ANALYSIS
D267V1, survival
                   sevent
clus2                0  1
  OR10AG1 MUTATED    4  2
  OR10AG1 WILD-TYPE 95 48
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                6               143 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
                2                48 
$`OR10AG1 MUTATED`
TCGA-05-4384 TCGA-05-4397 TCGA-38-4625 TCGA-44-6145 TCGA-50-6590 TCGA-67-3771 
       14.01        24.03        47.61         3.35        42.31         1.97 

$`OR10AG1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07         3.98        19.92        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21         4.60         3.48         6.84         0.30         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         1.28         1.15         0.36 

  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
             1.97              0.07 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
            47.61             85.32 
  OR10AG1 MUTATED OR10AG1 WILD-TYPE 
            19.02             13.15 
[1] "2.0 - 47.6 (19.0)" "0.1 - 85.3 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE"   "OR10AG1 MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" "OR10AG1 WILD-TYPE" 
       TCGA-91-6836 
"OR10AG1 WILD-TYPE" 
[1] "hr=" "1.2"
D267V2, continuous
D267V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR10AG1 MUTATED      4    2
  OR10AG1 WILD-TYPE   89   77
        clus
vv       OR10AG1 MUTATED OR10AG1 WILD-TYPE
  FEMALE               4                89
  MALE                 2                77
D267V4, continuous
D267V5, multiclass
D267V6, multiclass
    clus
vv   OR10AG1 MUTATED OR10AG1 WILD-TYPE
  T1               2                39
  T2               4               104
  T3               0                14
  T4               0                 8
D267V7, multiclass
       clus
vv      OR10AG1 MUTATED OR10AG1 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               1                34
D267V8, multiclass
    clus
vv   OR10AG1 MUTATED OR10AG1 WILD-TYPE
  M0               6               131
  M1               0                 9
  MX               0                22
D267V9, multiclass
     clus
vv    OR10AG1 MUTATED OR10AG1 WILD-TYPE
  I                 4                84
  II                1                32
  III               1                38
  IV                0                 9
D267V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR10AG1 MUTATED      0    6
  OR10AG1 WILD-TYPE   16  150
     clus
vv    OR10AG1 MUTATED OR10AG1 WILD-TYPE
  NO                0                16
  YES               6               150
D267V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR10AG1 MUTATED      0    6
  OR10AG1 WILD-TYPE   28  138
     clus
vv    OR10AG1 MUTATED OR10AG1 WILD-TYPE
  NO                0                28
  YES               6               138

Clustering(268) Variable = RERGL MUTATION ANALYSIS
D268V1, survival
                 sevent
clus2              0  1
  RERGL MUTATED    4  0
  RERGL WILD-TYPE 95 50
  RERGL MUTATED RERGL WILD-TYPE 
              4             145 
  RERGL MUTATED RERGL WILD-TYPE 
              0              50 
$`RERGL MUTATED`
TCGA-05-5425 TCGA-38-4626 TCGA-44-6776 TCGA-49-6745 
        2.96        85.32        63.72         4.93 

$`RERGL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02         1.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  RERGL MUTATED RERGL WILD-TYPE 
           2.96            0.07 
  RERGL MUTATED RERGL WILD-TYPE 
          85.32           83.84 
  RERGL MUTATED RERGL WILD-TYPE 
         34.325          13.870 
[1] "3.0 - 85.3 (34.3)" "0.1 - 83.8 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"RERGL WILD-TYPE" "RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"RERGL WILD-TYPE"   "RERGL MUTATED" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" "RERGL WILD-TYPE" 
     TCGA-91-6836 
"RERGL WILD-TYPE" 
[1] "hr="     "8.5e+07"
D268V2, continuous
D268V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RERGL MUTATED      3    2
  RERGL WILD-TYPE   90   77
        clus
vv       RERGL MUTATED RERGL WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D268V4, continuous
D268V5, multiclass
D268V6, multiclass
    clus
vv   RERGL MUTATED RERGL WILD-TYPE
  T1             1              40
  T2             4             104
  T3             0              14
  T4             0               8
D268V7, multiclass
       clus
vv      RERGL MUTATED RERGL WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             1              34
D268V8, multiclass
    clus
vv   RERGL MUTATED RERGL WILD-TYPE
  M0             3             134
  M1             0               9
  MX             2              20
D268V9, multiclass
     clus
vv    RERGL MUTATED RERGL WILD-TYPE
  I               2              86
  II              2              31
  III             1              38
  IV              0               9
D268V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RERGL MUTATED      0    5
  RERGL WILD-TYPE   16  151
     clus
vv    RERGL MUTATED RERGL WILD-TYPE
  NO              0              16
  YES             5             151
D268V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RERGL MUTATED      1    4
  RERGL WILD-TYPE   27  140
     clus
vv    RERGL MUTATED RERGL WILD-TYPE
  NO              1              27
  YES             4             140

Clustering(269) Variable = ZNF711 MUTATION ANALYSIS
D269V1, survival
                  sevent
clus2               0  1
  ZNF711 MUTATED    1  3
  ZNF711 WILD-TYPE 98 47
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               4              145 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
               3               47 
$`ZNF711 MUTATED`
TCGA-38-4628 TCGA-50-5045 TCGA-50-5942 TCGA-50-6594 
       49.02        71.47         4.44        12.16 

$`ZNF711 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61         5.19        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        12.99         4.93        20.48        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  ZNF711 MUTATED ZNF711 WILD-TYPE 
            4.44             0.07 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
           71.47            85.32 
  ZNF711 MUTATED ZNF711 WILD-TYPE 
           30.59            13.87 
[1] "4.4 - 71.5 (30.6)" "0.1 - 85.3 (13.9)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6836 
"ZNF711 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6836 
"ZNF711 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"ZNF711 WILD-TYPE"   "ZNF711 MUTATED" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" "ZNF711 WILD-TYPE" 
      TCGA-91-6836 
"ZNF711 WILD-TYPE" 
[1] "hr=" "1.1"
D269V2, continuous
D269V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF711 MUTATED      4    2
  ZNF711 WILD-TYPE   89   77
        clus
vv       ZNF711 MUTATED ZNF711 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D269V4, continuous
D269V5, multiclass
D269V6, multiclass
    clus
vv   ZNF711 MUTATED ZNF711 WILD-TYPE
  T1              1               40
  T2              4              104
  T3              1               13
  T4              0                8
D269V7, multiclass
       clus
vv      ZNF711 MUTATED ZNF711 WILD-TYPE
  N0                 2               93
  N1                 2               35
  N2+N3              2               33
D269V8, multiclass
    clus
vv   ZNF711 MUTATED ZNF711 WILD-TYPE
  M0              5              132
  M1              1                8
  MX              0               22
D269V9, multiclass
     clus
vv    ZNF711 MUTATED ZNF711 WILD-TYPE
  I                2               86
  II               1               32
  III              1               38
  IV               1                8
D269V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF711 MUTATED      2    4
  ZNF711 WILD-TYPE   14  152
     clus
vv    ZNF711 MUTATED ZNF711 WILD-TYPE
  NO               2               14
  YES              4              152
D269V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF711 MUTATED      0    6
  ZNF711 WILD-TYPE   28  138
     clus
vv    ZNF711 MUTATED ZNF711 WILD-TYPE
  NO               0               28
  YES              6              138

Clustering(270) Variable = GTDC1 MUTATION ANALYSIS
D270V1, survival
                 sevent
clus2              0  1
  GTDC1 MUTATED    4  3
  GTDC1 WILD-TYPE 95 47
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              7             142 
  GTDC1 MUTATED GTDC1 WILD-TYPE 
              3              47 
$`GTDC1 MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-05-4427 TCGA-38-4625 TCGA-44-5643 TCGA-50-6594 
        9.96        30.02        26.01        47.61         3.48        12.16 
TCGA-64-5775 
        0.10 

$`GTDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       29.95        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61         5.19        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       43.20        15.02        12.13        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GTDC1 MUTATED GTDC1 WILD-TYPE 
           0.10            0.07 
  GTDC1 MUTATED GTDC1 WILD-TYPE 
          47.61           85.32 
  GTDC1 MUTATED GTDC1 WILD-TYPE 
          12.16           13.94 
[1] "0.1 - 47.6 (12.2)" "0.1 - 85.3 (13.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6836 
"GTDC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6836 
"GTDC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTDC1 WILD-TYPE"   "GTDC1 MUTATED" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" "GTDC1 WILD-TYPE" 
     TCGA-91-6836 
"GTDC1 WILD-TYPE" 
[1] "hr=" "1.4"
D270V2, continuous
D270V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTDC1 MUTATED      3    4
  GTDC1 WILD-TYPE   90   75
        clus
vv       GTDC1 MUTATED GTDC1 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D270V4, continuous
D270V5, multiclass
D270V6, multiclass
    clus
vv   GTDC1 MUTATED GTDC1 WILD-TYPE
  T1             0              41
  T2             3             105
  T3             2              12
  T4             2               6
D270V7, multiclass
       clus
vv      GTDC1 MUTATED GTDC1 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             2              33
D270V8, multiclass
    clus
vv   GTDC1 MUTATED GTDC1 WILD-TYPE
  M0             7             130
  M1             0               9
  MX             0              22
D270V9, multiclass
     clus
vv    GTDC1 MUTATED GTDC1 WILD-TYPE
  I               1              87
  II              2              31
  III             4              35
  IV              0               9
D270V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTDC1 MUTATED      1    6
  GTDC1 WILD-TYPE   15  150
     clus
vv    GTDC1 MUTATED GTDC1 WILD-TYPE
  NO              1              15
  YES             6             150
D270V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTDC1 MUTATED      1    6
  GTDC1 WILD-TYPE   27  138
     clus
vv    GTDC1 MUTATED GTDC1 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(271) Variable = KIR2DS4 MUTATION ANALYSIS
D271V1, survival
                   sevent
clus2                0  1
  KIR2DS4 MUTATED    3  0
  KIR2DS4 WILD-TYPE 96 50
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
                3               146 
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
                0                50 
$`KIR2DS4 MUTATED`
TCGA-44-6145 TCGA-73-4666 TCGA-91-6835 
        3.35        20.28         1.15 

$`KIR2DS4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        2.70        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        12.99         4.93        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
       13.87         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6836 
        1.28         0.36 

  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
             1.15              0.07 
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
            20.28             85.32 
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
             3.35             13.94 
[1] "1.1 - 20.3 (3.4)"  "0.1 - 85.3 (13.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" 
       TCGA-91-6836 
"KIR2DS4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" 
       TCGA-91-6836 
"KIR2DS4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE"   "KIR2DS4 MUTATED" 
       TCGA-91-6836 
"KIR2DS4 WILD-TYPE" 
[1] "hr="     "3300000"
D271V2, continuous
D271V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIR2DS4 MUTATED      3    1
  KIR2DS4 WILD-TYPE   90   78
        clus
vv       KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  FEMALE               3                90
  MALE                 1                78
D271V4, continuous
[1] "Remove cluster labels:" "KIR2DS4 MUTATED"       
clus
  KIR2DS4 MUTATED KIR2DS4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" "KIR2DS4 WILD-TYPE" 
D271V5, multiclass
D271V6, multiclass
    clus
vv   KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  T1               3                38
  T2               1               107
  T3               0                14
  T4               0                 8
D271V7, multiclass
       clus
vv      KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  N0                  4                91
  N1                  0                37
  N2+N3               0                35
D271V8, multiclass
    clus
vv   KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  M0               2               135
  M1               1                 8
  MX               1                21
D271V9, multiclass
     clus
vv    KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  I                 3                85
  II                0                33
  III               0                39
  IV                1                 8
D271V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIR2DS4 MUTATED      1    3
  KIR2DS4 WILD-TYPE   15  153
     clus
vv    KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  NO                1                15
  YES               3               153
D271V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIR2DS4 MUTATED      1    3
  KIR2DS4 WILD-TYPE   27  141
     clus
vv    KIR2DS4 MUTATED KIR2DS4 WILD-TYPE
  NO                1                27
  YES               3               141

Clustering(272) Variable = KRTAP8-1 MUTATION ANALYSIS
D272V1, survival
                    sevent
clus2                 0  1
  KRTAP8-1 MUTATED    2  1
  KRTAP8-1 WILD-TYPE 97 49
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 3                146 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
                 1                 49 
$`KRTAP8-1 MUTATED`
TCGA-44-2668 TCGA-44-6145 TCGA-49-4487 
        8.09         3.35        28.11 

$`KRTAP8-1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61         5.19        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       17.39         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         4.01         1.25         1.22        41.33         1.28 
TCGA-91-6835 TCGA-91-6836 
        1.15         0.36 

  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
              3.35               0.07 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
             28.11              85.32 
  KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE 
              8.09              13.94 
[1] "3.4 - 28.1 (8.1)"  "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"KRTAP8-1 WILD-TYPE"   "KRTAP8-1 MUTATED" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP8-1 WILD-TYPE" "KRTAP8-1 WILD-TYPE" 
[1] "hr=" "2.1"
D272V2, continuous
D272V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP8-1 MUTATED      2    1
  KRTAP8-1 WILD-TYPE   91   78
        clus
vv       KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  FEMALE                2                 91
  MALE                  1                 78
D272V4, continuous
D272V5, multiclass
D272V6, multiclass
    clus
vv   KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  T1                2                 39
  T2                1                107
  T3                0                 14
  T4                0                  8
D272V7, multiclass
       clus
vv      KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  N0                   3                 92
  N1                   0                 37
  N2+N3                0                 35
D272V8, multiclass
    clus
vv   KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  M0                3                134
  M1                0                  9
  MX                0                 22
D272V9, multiclass
     clus
vv    KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  I                  3                 85
  II                 0                 33
  III                0                 39
  IV                 0                  9
D272V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP8-1 MUTATED      0    3
  KRTAP8-1 WILD-TYPE   16  153
     clus
vv    KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  NO                 0                 16
  YES                3                153
D272V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP8-1 MUTATED      0    3
  KRTAP8-1 WILD-TYPE   28  141
     clus
vv    KRTAP8-1 MUTATED KRTAP8-1 WILD-TYPE
  NO                 0                 28
  YES                3                141

Clustering(273) Variable = OLFM3 MUTATION ANALYSIS
D273V1, survival
                 sevent
clus2              0  1
  OLFM3 MUTATED    3  4
  OLFM3 WILD-TYPE 96 46
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              7             142 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              4              46 
$`OLFM3 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4427 TCGA-50-5045 TCGA-50-5049 TCGA-55-1592 
        9.96        24.03        26.01        71.47        48.82        23.05 
TCGA-73-4666 
       20.28 

$`OLFM3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
        4.93        20.48        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  OLFM3 MUTATED OLFM3 WILD-TYPE 
           9.96            0.07 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          71.47           85.32 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
          24.03           13.07 
[1] "10.0 - 71.5 (24.0)" "0.1 - 85.3 (13.1)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OLFM3 WILD-TYPE"   "OLFM3 MUTATED"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
  "OLFM3 MUTATED" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE"   "OLFM3 MUTATED" "OLFM3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-91-6836 
"OLFM3 WILD-TYPE" 
[1] "hr=" "1.1"
D273V2, continuous
D273V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      3    4
  OLFM3 WILD-TYPE   90   75
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D273V4, continuous
[1] "Remove cluster labels:" "OLFM3 MUTATED"         
clus
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" "OLFM3 WILD-TYPE" 
D273V5, multiclass
D273V6, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  T1             1              40
  T2             5             103
  T3             0              14
  T4             1               7
D273V7, multiclass
       clus
vv      OLFM3 MUTATED OLFM3 WILD-TYPE
  N0                3              92
  N1                4              33
  N2+N3             0              35
D273V8, multiclass
    clus
vv   OLFM3 MUTATED OLFM3 WILD-TYPE
  M0             6             131
  M1             1               8
  MX             0              22
D273V9, multiclass
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  I               3              85
  II              2              31
  III             1              38
  IV              1               8
D273V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      3    4
  OLFM3 WILD-TYPE   13  152
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  NO              3              13
  YES             4             152
D273V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OLFM3 MUTATED      1    6
  OLFM3 WILD-TYPE   27  138
     clus
vv    OLFM3 MUTATED OLFM3 WILD-TYPE
  NO              1              27
  YES             6             138

Clustering(274) Variable = SERPINI2 MUTATION ANALYSIS
D274V1, survival
                    sevent
clus2                 0  1
  SERPINI2 MUTATED    5  2
  SERPINI2 WILD-TYPE 94 48
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
                 7                142 
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
                 2                 48 
$`SERPINI2 MUTATED`
TCGA-05-4398 TCGA-35-4123 TCGA-44-2655 TCGA-44-2666 TCGA-50-5049 TCGA-50-5931 
       47.05         5.95        18.87         3.19        48.82         8.78 
TCGA-91-6836 
        0.36 

$`SERPINI2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        5.19        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       13.15         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        0.69        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.22        41.33         1.28         1.15 

  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
              0.36               0.07 
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
             48.82              85.32 
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
              8.78              13.94 
[1] "0.4 - 48.8 (8.8)"  "0.1 - 85.3 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-44-3396         TCGA-44-3398         TCGA-44-3918 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-44-5643 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-49-6745         TCGA-50-5044         TCGA-50-5045 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
  "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" "SERPINI2 WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-1676 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"SERPINI2 WILD-TYPE"   "SERPINI2 MUTATED" 
[1] "hr=" "1.1"
D274V2, continuous
D274V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINI2 MUTATED      4    3
  SERPINI2 WILD-TYPE   89   76
        clus
vv       SERPINI2 MUTATED SERPINI2 WILD-TYPE
  FEMALE                4                 89
  MALE                  3                 76
D274V4, continuous
[1] "Remove cluster labels:" "SERPINI2 MUTATED"      
clus
  SERPINI2 MUTATED SERPINI2 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-5375         TCGA-64-1677 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"SERPINI2 WILD-TYPE" "SERPINI2 WILD-TYPE" 
D274V5, multiclass
D274V6, multiclass
    clus
vv   SERPINI2 MUTATED SERPINI2 WILD-TYPE
  T1                2                 39
  T2                4                104
  T3                0                 14
  T4                1                  7
D274V7, multiclass
       clus
vv      SERPINI2 MUTATED SERPINI2 WILD-TYPE
  N0                   6                 89
  N1                   0                 37
  N2+N3                1                 34
D274V8, multiclass
    clus
vv   SERPINI2 MUTATED SERPINI2 WILD-TYPE
  M0                6                131
  M1                0                  9
  MX                1                 21
D274V9, multiclass
     clus
vv    SERPINI2 MUTATED SERPINI2 WILD-TYPE
  I                  6                 82
  II                 0                 33
  III                1                 38
  IV                 0                  9
D274V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINI2 MUTATED      1    6
  SERPINI2 WILD-TYPE   15  150
     clus
vv    SERPINI2 MUTATED SERPINI2 WILD-TYPE
  NO                 1                 15
  YES                6                150
D274V11, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SERPINI2 MUTATED      0    7
  SERPINI2 WILD-TYPE   28  137
     clus
vv    SERPINI2 MUTATED SERPINI2 WILD-TYPE
  NO                 0                 28
  YES                7                137

Clustering(275) Variable = TUBA3C MUTATION ANALYSIS
D275V1, survival
                  sevent
clus2               0  1
  TUBA3C MUTATED    4  1
  TUBA3C WILD-TYPE 95 49
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               5              144 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               49 
$`TUBA3C MUTATED`
TCGA-05-4382 TCGA-35-4122 TCGA-49-4487 TCGA-64-5781 TCGA-91-6828 
       19.92         7.36        28.11        39.52         1.22 

$`TUBA3C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        4.01         1.25        41.33         1.28         1.15         0.36 

  TUBA3C MUTATED TUBA3C WILD-TYPE 
            1.22             0.07 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           39.52            85.32 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           19.92            13.51 
[1] "1.2 - 39.5 (19.9)" "0.1 - 85.3 (13.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-91-6836 
"TUBA3C WILD-TYPE" 
[1] "hr=" "1.4"
D275V2, continuous
D275V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      3    4
  TUBA3C WILD-TYPE   90   75
        clus
vv       TUBA3C MUTATED TUBA3C WILD-TYPE
  FEMALE              3               90
  MALE                4               75
D275V4, continuous
[1] "Remove cluster labels:" "TUBA3C MUTATED"        
clus
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
D275V5, multiclass
D275V6, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  T1              3               38
  T2              3              105
  T3              1               13
  T4              0                8
D275V7, multiclass
       clus
vv      TUBA3C MUTATED TUBA3C WILD-TYPE
  N0                 7               88
  N1                 0               37
  N2+N3              0               35
D275V8, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  M0              5              132
  M1              0                9
  MX              2               20
D275V9, multiclass
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  I                6               82
  II               1               32
  III              0               39
  IV               0                9
D275V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      0    7
  TUBA3C WILD-TYPE   16  149
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  NO               0               16
  YES              7              149
D275V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      0    7
  TUBA3C WILD-TYPE   28  137
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  NO               0               28
  YES              7              137

Clustering(276) Variable = GALNT13 MUTATION ANALYSIS
D276V1, survival
                   sevent
clus2                0  1
  GALNT13 MUTATED    4  3
  GALNT13 WILD-TYPE 95 47
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                7               142 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
                3                47 
$`GALNT13 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4424 TCGA-44-2655 TCGA-50-5933 TCGA-50-5941 
        9.96        14.93        30.02        18.87        77.88         9.37 
TCGA-64-5775 
        0.10 

$`GALNT13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60         3.48         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 
       15.35         0.46         1.32         4.01         1.25         1.22 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33         1.28         1.15         0.36 

  GALNT13 MUTATED GALNT13 WILD-TYPE 
             0.10              0.07 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
            77.88             85.32 
  GALNT13 MUTATED GALNT13 WILD-TYPE 
            14.93             13.51 
[1] "0.1 - 77.9 (14.9)" "0.1 - 85.3 (13.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE"   "GALNT13 MUTATED" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2661 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-3919 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4494        TCGA-49-4501 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-50-5044        TCGA-50-5045 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-1676        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"GALNT13 WILD-TYPE"   "GALNT13 MUTATED" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" "GALNT13 WILD-TYPE" 
       TCGA-91-6836 
"GALNT13 WILD-TYPE" 
[1] "hr=" "1.1"
D276V2, continuous
D276V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT13 MUTATED      3    4
  GALNT13 WILD-TYPE   90   75
        clus
vv       GALNT13 MUTATED GALNT13 WILD-TYPE
  FEMALE               3                90
  MALE                 4                75
D276V4, continuous
D276V5, multiclass
D276V6, multiclass
    clus
vv   GALNT13 MUTATED GALNT13 WILD-TYPE
  T1               1                40
  T2               2               106
  T3               1                13
  T4               3                 5
D276V7, multiclass
       clus
vv      GALNT13 MUTATED GALNT13 WILD-TYPE
  N0                  4                91
  N1                  1                36
  N2+N3               2                33
D276V8, multiclass
    clus
vv   GALNT13 MUTATED GALNT13 WILD-TYPE
  M0               7               130
  M1               0                 9
  MX               0                22
D276V9, multiclass
     clus
vv    GALNT13 MUTATED GALNT13 WILD-TYPE
  I                 2                86
  II                1                32
  III               4                35
  IV                0                 9
D276V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT13 MUTATED      1    6
  GALNT13 WILD-TYPE   15  150
     clus
vv    GALNT13 MUTATED GALNT13 WILD-TYPE
  NO                1                15
  YES               6               150
D276V11, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT13 MUTATED      0    7
  GALNT13 WILD-TYPE   28  137
     clus
vv    GALNT13 MUTATED GALNT13 WILD-TYPE
  NO                0                28
  YES               7               137

Clustering(277) Variable = MPPED2 MUTATION ANALYSIS
D277V1, survival
                  sevent
clus2               0  1
  MPPED2 MUTATED    4  0
  MPPED2 WILD-TYPE 95 50
  MPPED2 MUTATED MPPED2 WILD-TYPE 
               4              145 
  MPPED2 MUTATED MPPED2 WILD-TYPE 
               0               50 
$`MPPED2 MUTATED`
TCGA-05-4424 TCGA-38-4625 TCGA-44-4112 TCGA-73-4668 
       30.02        47.61         4.60        15.35 

$`MPPED2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
        2.04         0.59         0.89         0.69        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        20.28         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  MPPED2 MUTATED MPPED2 WILD-TYPE 
            4.60             0.07 
  MPPED2 MUTATED MPPED2 WILD-TYPE 
           47.61            85.32 
  MPPED2 MUTATED MPPED2 WILD-TYPE 
          22.685           13.150 
[1] "4.6 - 47.6 (22.7)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "MPPED2 MUTATED" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6836 
"MPPED2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "MPPED2 MUTATED" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6836 
"MPPED2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" "MPPED2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
  "MPPED2 MUTATED" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE"   "MPPED2 MUTATED" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-91-6836 
"MPPED2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D277V2, continuous
D277V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MPPED2 MUTATED      3    1
  MPPED2 WILD-TYPE   90   78
        clus
vv       MPPED2 MUTATED MPPED2 WILD-TYPE
  FEMALE              3               90
  MALE                1               78
D277V4, continuous
[1] "Remove cluster labels:" "MPPED2 MUTATED"        
clus
  MPPED2 MUTATED MPPED2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" "MPPED2 WILD-TYPE" 
D277V5, multiclass
D277V6, multiclass
    clus
vv   MPPED2 MUTATED MPPED2 WILD-TYPE
  T1              0               41
  T2              3              105
  T3              1               13
  T4              0                8
D277V7, multiclass
       clus
vv      MPPED2 MUTATED MPPED2 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              0               35
D277V8, multiclass
    clus
vv   MPPED2 MUTATED MPPED2 WILD-TYPE
  M0              4              133
  M1              0                9
  MX              0               22
D277V9, multiclass
     clus
vv    MPPED2 MUTATED MPPED2 WILD-TYPE
  I                2               86
  II               2               31
  III              0               39
  IV               0                9
D277V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MPPED2 MUTATED      0    4
  MPPED2 WILD-TYPE   16  152
     clus
vv    MPPED2 MUTATED MPPED2 WILD-TYPE
  NO               0               16
  YES              4              152
D277V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MPPED2 MUTATED      2    2
  MPPED2 WILD-TYPE   26  142
     clus
vv    MPPED2 MUTATED MPPED2 WILD-TYPE
  NO               2               26
  YES              2              142

Clustering(278) Variable = OR5H1 MUTATION ANALYSIS
D278V1, survival
                 sevent
clus2              0  1
  OR5H1 MUTATED    3  1
  OR5H1 WILD-TYPE 96 49
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              4             145 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
              1              49 
$`OR5H1 MUTATED`
TCGA-05-4417 TCGA-38-4631 TCGA-49-6743 TCGA-64-1676 
       14.93        11.64        12.13        56.81 

$`OR5H1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        5.19        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60         3.48         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46        29.75        43.20        15.02        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
        0.59         0.89         0.69        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        4.01         1.25         1.22        41.33         1.28         1.15 
TCGA-91-6836 
        0.36 

  OR5H1 MUTATED OR5H1 WILD-TYPE 
          11.64            0.07 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
          56.81           85.32 
  OR5H1 MUTATED OR5H1 WILD-TYPE 
          13.53           13.87 
[1] "11.6 - 56.8 (13.5)" "0.1 - 85.3 (13.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6836 
"OR5H1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6836 
"OR5H1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4390      TCGA-05-4396      TCGA-05-4397      TCGA-05-4398 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4424      TCGA-05-4426 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE"   "OR5H1 MUTATED" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
  "OR5H1 MUTATED" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774      TCGA-67-6215 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" "OR5H1 WILD-TYPE" 
     TCGA-91-6836 
"OR5H1 WILD-TYPE" 
[1] "hr=" "1.8"
D278V2, continuous
D278V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5H1 MUTATED      3    1
  OR5H1 WILD-TYPE   90   78
        clus
vv       OR5H1 MUTATED OR5H1 WILD-TYPE
  FEMALE             3              90
  MALE               1              78
D278V4, continuous
D278V5, multiclass
D278V6, multiclass
    clus
vv   OR5H1 MUTATED OR5H1 WILD-TYPE
  T1             2              39
  T2             2             106
  T3             0              14
  T4             0               8
D278V7, multiclass
       clus
vv      OR5H1 MUTATED OR5H1 WILD-TYPE
  N0                3              92
  N1                0              37
  N2+N3             1              34
D278V8, multiclass
    clus
vv   OR5H1 MUTATED OR5H1 WILD-TYPE
  M0             3             134
  M1             0               9
  MX             1              21
D278V9, multiclass
     clus
vv    OR5H1 MUTATED OR5H1 WILD-TYPE
  I               3              85
  II              0              33
  III             1              38
  IV              0               9
D278V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5H1 MUTATED      0    4
  OR5H1 WILD-TYPE   16  152
     clus
vv    OR5H1 MUTATED OR5H1 WILD-TYPE
  NO              0              16
  YES             4             152
D278V11, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5H1 MUTATED      1    3
  OR5H1 WILD-TYPE   27  141
     clus
vv    OR5H1 MUTATED OR5H1 WILD-TYPE
  NO              1              27
  YES             3             141

Clustering(279) Variable = HSD3B2 MUTATION ANALYSIS
D279V1, survival
                  sevent
clus2               0  1
  HSD3B2 MUTATED    5  3
  HSD3B2 WILD-TYPE 94 47
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
               8              141 
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
               3               47 
$`HSD3B2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-50-5933 TCGA-55-1595 TCGA-64-1676 
       19.92        37.02         9.96        77.88        48.62        56.81 
TCGA-64-5775 TCGA-64-5781 
        0.10        39.52 

$`HSD3B2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       38.07         3.98        14.01        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       20.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        4.93        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84        30.44        16.67         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6829 
        0.46         1.32         4.01         1.25         1.22        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28         1.15         0.36 

  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
            0.10             0.07 
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
           77.88            85.32 
  HSD3B2 MUTATED HSD3B2 WILD-TYPE 
           38.27            13.15 
[1] "0.1 - 77.9 (38.3)" "0.1 - 85.3 (13.2)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "HSD3B2 MUTATED"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6836 
"HSD3B2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "HSD3B2 MUTATED"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6836 
"HSD3B2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-05-4390       TCGA-05-4396       TCGA-05-4397       TCGA-05-4398 
  "HSD3B2 MUTATED"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4402       TCGA-05-4405       TCGA-05-4415       TCGA-05-4417 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4418       TCGA-05-4420       TCGA-05-4424       TCGA-05-4426 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-05-5429       TCGA-05-5715       TCGA-35-3615       TCGA-35-4122 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-35-4123       TCGA-35-5375       TCGA-38-4625       TCGA-38-4626 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4627       TCGA-38-4628       TCGA-38-4629       TCGA-38-4630 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-38-4631       TCGA-38-4632       TCGA-38-6178       TCGA-44-2655 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2661 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-3919 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4486       TCGA-49-4487 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4494       TCGA-49-4501 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-50-5044       TCGA-50-5045 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-1676       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"HSD3B2 WILD-TYPE"   "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-3770       TCGA-67-3771 
  "HSD3B2 MUTATED" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774       TCGA-67-6215 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4659       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-73-4677 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6835 
"HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" "HSD3B2 WILD-TYPE" 
      TCGA-91-6836 
"HSD3B2 WILD-TYPE" 
[1] "hr=" "2.1"
D279V2, continuous
D279V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HSD3B2 MUTATED      3    5
  HSD3B2 WILD-TYPE   90   74
        clus
vv       HSD3B2 MUTATED HSD3B2 WILD-TYPE
  FEMALE              3               90
  MALE                5               74
D279V4, continuous
D279V5, multiclass
D279V6, multiclass
    clus
vv   HSD3B2 MUTATED HSD3B2 WILD-TYPE
  T1              2               39
  T2              3              105
  T3              0               14
  T4              3                5
D279V7, multiclass
       clus
vv      HSD3B2 MUTATED HSD3B2 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
D279V8, multiclass
    clus
vv   HSD3B2 MUTATED HSD3B2 WILD-TYPE
  M0              8              129
  M1              0                9
  MX              0               22
D279V9, multiclass
     clus
vv    HSD3B2 MUTATED HSD3B2 WILD-TYPE
  I                5               83
  II               0               33
  III              3               36
  IV               0                9
D279V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HSD3B2 MUTATED      1    7
  HSD3B2 WILD-TYPE   15  149
     clus
vv    HSD3B2 MUTATED HSD3B2 WILD-TYPE
  NO               1               15
  YES              7              149
D279V11, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HSD3B2 MUTATED      0    8
  HSD3B2 WILD-TYPE   28  136
     clus
vv    HSD3B2 MUTATED HSD3B2 WILD-TYPE
  NO               0               28
  YES              8              136
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
