
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.41.3771/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/181549/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/PRAD/1709387/1.GDAC_clinicalDataPicker.Finished/PRAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PRAD", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=PRAD"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=127, in cluster file=152, common to both=123
[1] "Reduce the number of clustering variables from 44 to 43."
[1]  43 123
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            7                           116 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            7                           116 
[1] "Amp Peak  2(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE 
                           21                           102 
  AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE 
                           21                           102 
[1] "Amp Peak  3(7p15.3) mutation analysis"
[1] 3
  AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE 
                           25                            98 
  AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE 
                           25                            98 
[1] "Amp Peak  4(8p11.22) mutation analysis"
[1] 3
  AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE 
                            14                            109 
  AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE 
                            14                            109 
[1] "Amp Peak  5(12q24.32) mutation analysis"
[1] 3
  AMP PEAK  5(12Q24.32) MUTATED AMP PEAK  5(12Q24.32) WILD-TYPE 
                              7                             116 
  AMP PEAK  5(12Q24.32) MUTATED AMP PEAK  5(12Q24.32) WILD-TYPE 
                              7                             116 
[1] "Amp Peak  6(14q21.1) mutation analysis"
[1] 3
  AMP PEAK  6(14Q21.1) MUTATED AMP PEAK  6(14Q21.1) WILD-TYPE 
                             6                            117 
  AMP PEAK  6(14Q21.1) MUTATED AMP PEAK  6(14Q21.1) WILD-TYPE 
                             6                            117 
[1] "Amp Peak  8(Xp22.11) mutation analysis"
[1] 3
  AMP PEAK  8(XP22.11) MUTATED AMP PEAK  8(XP22.11) WILD-TYPE 
                             4                            119 
  AMP PEAK  8(XP22.11) MUTATED AMP PEAK  8(XP22.11) WILD-TYPE 
                             4                            119 
[1] "Amp Peak  9(Xp21.1) mutation analysis"
[1] 3
  AMP PEAK  9(XP21.1) MUTATED AMP PEAK  9(XP21.1) WILD-TYPE 
                            4                           119 
  AMP PEAK  9(XP21.1) MUTATED AMP PEAK  9(XP21.1) WILD-TYPE 
                            4                           119 
[1] "Amp Peak 10(Xq21.1) mutation analysis"
[1] 3
  AMP PEAK 10(XQ21.1) MUTATED AMP PEAK 10(XQ21.1) WILD-TYPE 
                            7                           116 
  AMP PEAK 10(XQ21.1) MUTATED AMP PEAK 10(XQ21.1) WILD-TYPE 
                            7                           116 
[1] "Amp Peak 11(Xq21.1) mutation analysis"
[1] 3
  AMP PEAK 11(XQ21.1) MUTATED AMP PEAK 11(XQ21.1) WILD-TYPE 
                            4                           119 
  AMP PEAK 11(XQ21.1) MUTATED AMP PEAK 11(XQ21.1) WILD-TYPE 
                            4                           119 
[1] "Amp Peak 12(Xq21.31) mutation analysis"
[1] 3
  AMP PEAK 12(XQ21.31) MUTATED AMP PEAK 12(XQ21.31) WILD-TYPE 
                             5                            118 
  AMP PEAK 12(XQ21.31) MUTATED AMP PEAK 12(XQ21.31) WILD-TYPE 
                             5                            118 
[1] "Amp Peak 13(Xq25) mutation analysis"
[1] 3
  AMP PEAK 13(XQ25) MUTATED AMP PEAK 13(XQ25) WILD-TYPE 
                          3                         120 
  AMP PEAK 13(XQ25) MUTATED AMP PEAK 13(XQ25) WILD-TYPE 
                          3                         120 
[1] "Amp Peak 14(Xq25) mutation analysis"
[1] 3
  AMP PEAK 14(XQ25) MUTATED AMP PEAK 14(XQ25) WILD-TYPE 
                          6                         117 
  AMP PEAK 14(XQ25) MUTATED AMP PEAK 14(XQ25) WILD-TYPE 
                          6                         117 
[1] "Amp Peak 15(Xq27.1) mutation analysis"
[1] 3
  AMP PEAK 15(XQ27.1) MUTATED AMP PEAK 15(XQ27.1) WILD-TYPE 
                            7                           116 
  AMP PEAK 15(XQ27.1) MUTATED AMP PEAK 15(XQ27.1) WILD-TYPE 
                            7                           116 
[1] "Del Peak  1(1p31.3) mutation analysis"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           16                           107 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           16                           107 
[1] "Del Peak  2(1p13.3) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE 
                           12                           111 
  DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE 
                           12                           111 
[1] "Del Peak  3(1q23.1) mutation analysis"
[1] 3
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                            3                           120 
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                            3                           120 
[1] "Del Peak  4(1q42.2) mutation analysis"
[1] 3
  DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE 
                           11                           112 
  DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE 
                           11                           112 
[1] "Del Peak  5(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           14                           109 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           14                           109 
[1] "Del Peak  6(2q31.1) mutation analysis"
[1] 3
  DEL PEAK  6(2Q31.1) MUTATED DEL PEAK  6(2Q31.1) WILD-TYPE 
                           15                           108 
  DEL PEAK  6(2Q31.1) MUTATED DEL PEAK  6(2Q31.1) WILD-TYPE 
                           15                           108 
[1] "Del Peak  7(3p13) mutation analysis"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         21                         102 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         21                         102 
[1] "Del Peak  8(3q29) mutation analysis"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                          9                         114 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                          9                         114 
[1] "Del Peak  9(4q28.2) mutation analysis"
[1] 3
  DEL PEAK  9(4Q28.2) MUTATED DEL PEAK  9(4Q28.2) WILD-TYPE 
                           12                           111 
  DEL PEAK  9(4Q28.2) MUTATED DEL PEAK  9(4Q28.2) WILD-TYPE 
                           12                           111 
[1] "Del Peak 10(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           19                           104 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           19                           104 
[1] "Del Peak 11(5q21.1) mutation analysis"
[1] 3
  DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE 
                           25                            98 
  DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE 
                           25                            98 
[1] "Del Peak 12(5q22.3) mutation analysis"
[1] 3
  DEL PEAK 12(5Q22.3) MUTATED DEL PEAK 12(5Q22.3) WILD-TYPE 
                           14                           109 
  DEL PEAK 12(5Q22.3) MUTATED DEL PEAK 12(5Q22.3) WILD-TYPE 
                           14                           109 
[1] "Del Peak 13(6q15) mutation analysis"
[1] 3
  DEL PEAK 13(6Q15) MUTATED DEL PEAK 13(6Q15) WILD-TYPE 
                         41                          82 
  DEL PEAK 13(6Q15) MUTATED DEL PEAK 13(6Q15) WILD-TYPE 
                         41                          82 
[1] "Del Peak 14(7q36.1) mutation analysis"
[1] 3
  DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE 
                            5                           118 
  DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE 
                            5                           118 
[1] "Del Peak 15(8p21.3) mutation analysis"
[1] 3
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                           74                            49 
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                           74                            49 
[1] "Del Peak 16(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            43                             80 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            43                             80 
[1] "Del Peak 17(9p22.3) mutation analysis"
[1] 3
  DEL PEAK 17(9P22.3) MUTATED DEL PEAK 17(9P22.3) WILD-TYPE 
                           11                           112 
  DEL PEAK 17(9P22.3) MUTATED DEL PEAK 17(9P22.3) WILD-TYPE 
                           11                           112 
[1] "Del Peak 18(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             45                              78 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             45                              78 
[1] "Del Peak 19(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 19(11Q23.2) MUTATED DEL PEAK 19(11Q23.2) WILD-TYPE 
                            14                            109 
  DEL PEAK 19(11Q23.2) MUTATED DEL PEAK 19(11Q23.2) WILD-TYPE 
                            14                            109 
[1] "Del Peak 20(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 20(12P13.2) MUTATED DEL PEAK 20(12P13.2) WILD-TYPE 
                            29                             94 
  DEL PEAK 20(12P13.2) MUTATED DEL PEAK 20(12P13.2) WILD-TYPE 
                            29                             94 
[1] "Del Peak 21(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE 
                             10                             113 
  DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE 
                             10                             113 
[1] "Del Peak 22(13q14.13) mutation analysis"
[1] 3
  DEL PEAK 22(13Q14.13) MUTATED DEL PEAK 22(13Q14.13) WILD-TYPE 
                             55                              68 
  DEL PEAK 22(13Q14.13) MUTATED DEL PEAK 22(13Q14.13) WILD-TYPE 
                             55                              68 
[1] "Del Peak 23(16q22.3) mutation analysis"
[1] 3
  DEL PEAK 23(16Q22.3) MUTATED DEL PEAK 23(16Q22.3) WILD-TYPE 
                            38                             85 
  DEL PEAK 23(16Q22.3) MUTATED DEL PEAK 23(16Q22.3) WILD-TYPE 
                            38                             85 
[1] "Del Peak 24(16q24.1) mutation analysis"
[1] 3
  DEL PEAK 24(16Q24.1) MUTATED DEL PEAK 24(16Q24.1) WILD-TYPE 
                            50                             73 
  DEL PEAK 24(16Q24.1) MUTATED DEL PEAK 24(16Q24.1) WILD-TYPE 
                            50                             73 
[1] "Del Peak 25(17p13.1) mutation analysis"
[1] 3
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                            31                             92 
  DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE 
                            31                             92 
[1] "Del Peak 26(17q21.31) mutation analysis"
[1] 3
  DEL PEAK 26(17Q21.31) MUTATED DEL PEAK 26(17Q21.31) WILD-TYPE 
                             21                             102 
  DEL PEAK 26(17Q21.31) MUTATED DEL PEAK 26(17Q21.31) WILD-TYPE 
                             21                             102 
[1] "Del Peak 27(18q22.1) mutation analysis"
[1] 3
  DEL PEAK 27(18Q22.1) MUTATED DEL PEAK 27(18Q22.1) WILD-TYPE 
                            30                             93 
  DEL PEAK 27(18Q22.1) MUTATED DEL PEAK 27(18Q22.1) WILD-TYPE 
                            30                             93 
[1] "Del Peak 28(18q23) mutation analysis"
[1] 3
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                          36                           87 
  DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE 
                          36                           87 
[1] "Del Peak 29(21q22.3) mutation analysis"
[1] 3
  DEL PEAK 29(21Q22.3) MUTATED DEL PEAK 29(21Q22.3) WILD-TYPE 
                            41                             82 
  DEL PEAK 29(21Q22.3) MUTATED DEL PEAK 29(21Q22.3) WILD-TYPE 
                            41                             82 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 123 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          424 
TCGA-CH-5744 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
          60          731           31          395         1065          942 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
          31           62           28         1339          365           31 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
         700           31          458          731           62          395 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
         485          820          303          974         1004           91 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
         881          378          605          594          396          536 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
         532          729          244          530          229          447 
TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
         356          182          907         1096          737          788 
TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 
         782          724         1061          783          849         1195 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
        1153          842         1403          834          790          567 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 
         397         1272          724          910          519          821 
TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7327 
        1490         1860          295          289          285          175 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 
         170          191            9          169           64          131 
TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 
         167          258           79           52           70          217 
TCGA-EJ-7792 TCGA-EJ-7794 TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
         526          284           32          923         2328         1925 
TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 
        1669         1649         1338          554         1144         1215 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
         847         1000         1008          822          993          841 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
         804          101          875          851          806          846 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
         505          518          664          390          356         1442 
TCGA-G9-6496 TCGA-G9-6499 TCGA-H9-7775 TCGA-HC-7230 TCGA-HC-7231 TCGA-HI-7168 
        1014         1109           31           51           72         2315 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
        1949         1899           NA 
Variable 1:'AGE':	nDistinctValues=28,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=110,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "RADIATIONS.RADIATION.REGIMENINDICATION"
[3] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 123 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=28, binary=FALSE, numeric=TRUE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  1(1Q21.3) WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      7    0
  AMP PEAK  1(1Q21.3) WILD-TYPE  111    5
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            0                             5
  YES                           7                           111
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      7    0
  AMP PEAK  1(1Q21.3) WILD-TYPE  112    4
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            0                             4
  YES                           7                           112

Clustering(2) Variable = Amp Peak  2(3q26.2) mutation analysis
D2V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "AMP PEAK  2(3Q26.2) MUTATED" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  2(3Q26.2) WILD-TYPE"   "AMP PEAK  2(3Q26.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  2(3Q26.2) WILD-TYPE" "AMP PEAK  2(3Q26.2) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  2(3Q26.2) WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(3Q26.2) MUTATED     21    0
  AMP PEAK  2(3Q26.2) WILD-TYPE   97    5
     clus
vv    AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  NO                            0                             5
  YES                          21                            97
D2V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(3Q26.2) MUTATED     19    2
  AMP PEAK  2(3Q26.2) WILD-TYPE  100    2
     clus
vv    AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  NO                            2                             2
  YES                          19                           100

Clustering(3) Variable = Amp Peak  3(7p15.3) mutation analysis
D3V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  3(7P15.3) MUTATED" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "AMP PEAK  3(7P15.3) MUTATED"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  3(7P15.3) WILD-TYPE"   "AMP PEAK  3(7P15.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  3(7P15.3) WILD-TYPE" "AMP PEAK  3(7P15.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "AMP PEAK  3(7P15.3) MUTATED" 
[1] "hr=" "1"  
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7P15.3) MUTATED     23    2
  AMP PEAK  3(7P15.3) WILD-TYPE   95    3
     clus
vv    AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  NO                            2                             3
  YES                          23                            95
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(7P15.3) MUTATED     23    2
  AMP PEAK  3(7P15.3) WILD-TYPE   96    2
     clus
vv    AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  NO                            2                             2
  YES                          23                            96

Clustering(4) Variable = Amp Peak  4(8p11.22) mutation analysis
D4V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "AMP PEAK  4(8P11.22) MUTATED" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  4(8P11.22) WILD-TYPE"   "AMP PEAK  4(8P11.22) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  4(8P11.22) WILD-TYPE" "AMP PEAK  4(8P11.22) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  4(8P11.22) WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8P11.22) MUTATED     14    0
  AMP PEAK  4(8P11.22) WILD-TYPE  104    5
     clus
vv    AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  NO                             0                              5
  YES                           14                            104
D4V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(8P11.22) MUTATED     12    2
  AMP PEAK  4(8P11.22) WILD-TYPE  107    2
     clus
vv    AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  NO                             2                              2
  YES                           12                            107

Clustering(5) Variable = Amp Peak  5(12q24.32) mutation analysis
D5V1, survival
                     TCGA-CH-5737                      TCGA-CH-5738 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
  "AMP PEAK  5(12Q24.32) MUTATED"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"AMP PEAK  5(12Q24.32) WILD-TYPE"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7171 
  "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
  "AMP PEAK  5(12Q24.32) MUTATED"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"AMP PEAK  5(12Q24.32) WILD-TYPE"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7171 
  "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
  "AMP PEAK  5(12Q24.32) MUTATED"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"AMP PEAK  5(12Q24.32) WILD-TYPE"   "AMP PEAK  5(12Q24.32) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "AMP PEAK  5(12Q24.32) MUTATED" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"AMP PEAK  5(12Q24.32) WILD-TYPE" "AMP PEAK  5(12Q24.32) WILD-TYPE" 
                     TCGA-HI-7171 
  "AMP PEAK  5(12Q24.32) MUTATED" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  5(12Q24.32) MUTATED      6    1
  AMP PEAK  5(12Q24.32) WILD-TYPE  112    4
     clus
vv    AMP PEAK  5(12Q24.32) MUTATED AMP PEAK  5(12Q24.32) WILD-TYPE
  NO                              1                               4
  YES                             6                             112
D5V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  5(12Q24.32) MUTATED      6    1
  AMP PEAK  5(12Q24.32) WILD-TYPE  113    3
     clus
vv    AMP PEAK  5(12Q24.32) MUTATED AMP PEAK  5(12Q24.32) WILD-TYPE
  NO                              1                               3
  YES                             6                             113

Clustering(6) Variable = Amp Peak  6(14q21.1) mutation analysis
D6V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
  "AMP PEAK  6(14Q21.1) MUTATED" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  6(14Q21.1) WILD-TYPE"   "AMP PEAK  6(14Q21.1) MUTATED" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  6(14Q21.1) WILD-TYPE" "AMP PEAK  6(14Q21.1) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  6(14Q21.1) WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(14Q21.1) MUTATED      5    1
  AMP PEAK  6(14Q21.1) WILD-TYPE  113    4
     clus
vv    AMP PEAK  6(14Q21.1) MUTATED AMP PEAK  6(14Q21.1) WILD-TYPE
  NO                             1                              4
  YES                            5                            113
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(14Q21.1) MUTATED      5    1
  AMP PEAK  6(14Q21.1) WILD-TYPE  114    3
     clus
vv    AMP PEAK  6(14Q21.1) MUTATED AMP PEAK  6(14Q21.1) WILD-TYPE
  NO                             1                              3
  YES                            5                            114

Clustering(7) Variable = Amp Peak  8(Xp22.11) mutation analysis
D7V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  8(XP22.11) WILD-TYPE"   "AMP PEAK  8(XP22.11) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  8(XP22.11) WILD-TYPE"   "AMP PEAK  8(XP22.11) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK  8(XP22.11) WILD-TYPE"   "AMP PEAK  8(XP22.11) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK  8(XP22.11) MUTATED" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK  8(XP22.11) WILD-TYPE" "AMP PEAK  8(XP22.11) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK  8(XP22.11) WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(XP22.11) MUTATED      4    0
  AMP PEAK  8(XP22.11) WILD-TYPE  114    5
     clus
vv    AMP PEAK  8(XP22.11) MUTATED AMP PEAK  8(XP22.11) WILD-TYPE
  NO                             0                              5
  YES                            4                            114
D7V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(XP22.11) MUTATED      4    0
  AMP PEAK  8(XP22.11) WILD-TYPE  115    4
     clus
vv    AMP PEAK  8(XP22.11) MUTATED AMP PEAK  8(XP22.11) WILD-TYPE
  NO                             0                              4
  YES                            4                            115

Clustering(8) Variable = Amp Peak  9(Xp21.1) mutation analysis
D8V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  9(XP21.1) WILD-TYPE"   "AMP PEAK  9(XP21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  9(XP21.1) WILD-TYPE"   "AMP PEAK  9(XP21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK  9(XP21.1) WILD-TYPE"   "AMP PEAK  9(XP21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK  9(XP21.1) MUTATED" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK  9(XP21.1) WILD-TYPE" "AMP PEAK  9(XP21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK  9(XP21.1) WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(XP21.1) MUTATED      4    0
  AMP PEAK  9(XP21.1) WILD-TYPE  114    5
     clus
vv    AMP PEAK  9(XP21.1) MUTATED AMP PEAK  9(XP21.1) WILD-TYPE
  NO                            0                             5
  YES                           4                           114
D8V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(XP21.1) MUTATED      4    0
  AMP PEAK  9(XP21.1) WILD-TYPE  115    4
     clus
vv    AMP PEAK  9(XP21.1) MUTATED AMP PEAK  9(XP21.1) WILD-TYPE
  NO                            0                             4
  YES                           4                           115

Clustering(9) Variable = Amp Peak 10(Xq21.1) mutation analysis
D9V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 10(XQ21.1) MUTATED" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 10(XQ21.1) WILD-TYPE"   "AMP PEAK 10(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 10(XQ21.1) WILD-TYPE" "AMP PEAK 10(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 10(XQ21.1) WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(XQ21.1) MUTATED      7    0
  AMP PEAK 10(XQ21.1) WILD-TYPE  111    5
     clus
vv    AMP PEAK 10(XQ21.1) MUTATED AMP PEAK 10(XQ21.1) WILD-TYPE
  NO                            0                             5
  YES                           7                           111
D9V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(XQ21.1) MUTATED      7    0
  AMP PEAK 10(XQ21.1) WILD-TYPE  112    4
     clus
vv    AMP PEAK 10(XQ21.1) MUTATED AMP PEAK 10(XQ21.1) WILD-TYPE
  NO                            0                             4
  YES                           7                           112

Clustering(10) Variable = Amp Peak 11(Xq21.1) mutation analysis
D10V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 11(XQ21.1) WILD-TYPE"   "AMP PEAK 11(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 11(XQ21.1) WILD-TYPE"   "AMP PEAK 11(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 11(XQ21.1) MUTATED" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 11(XQ21.1) WILD-TYPE"   "AMP PEAK 11(XQ21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 11(XQ21.1) WILD-TYPE" "AMP PEAK 11(XQ21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 11(XQ21.1) WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(XQ21.1) MUTATED      4    0
  AMP PEAK 11(XQ21.1) WILD-TYPE  114    5
     clus
vv    AMP PEAK 11(XQ21.1) MUTATED AMP PEAK 11(XQ21.1) WILD-TYPE
  NO                            0                             5
  YES                           4                           114
D10V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(XQ21.1) MUTATED      4    0
  AMP PEAK 11(XQ21.1) WILD-TYPE  115    4
     clus
vv    AMP PEAK 11(XQ21.1) MUTATED AMP PEAK 11(XQ21.1) WILD-TYPE
  NO                            0                             4
  YES                           4                           115

Clustering(11) Variable = Amp Peak 12(Xq21.31) mutation analysis
D11V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "AMP PEAK 12(XQ21.31) MUTATED" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 12(XQ21.31) WILD-TYPE"   "AMP PEAK 12(XQ21.31) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 12(XQ21.31) WILD-TYPE" "AMP PEAK 12(XQ21.31) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK 12(XQ21.31) WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(XQ21.31) MUTATED      5    0
  AMP PEAK 12(XQ21.31) WILD-TYPE  113    5
     clus
vv    AMP PEAK 12(XQ21.31) MUTATED AMP PEAK 12(XQ21.31) WILD-TYPE
  NO                             0                              5
  YES                            5                            113
D11V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(XQ21.31) MUTATED      5    0
  AMP PEAK 12(XQ21.31) WILD-TYPE  114    4
     clus
vv    AMP PEAK 12(XQ21.31) MUTATED AMP PEAK 12(XQ21.31) WILD-TYPE
  NO                             0                              4
  YES                            5                            114

Clustering(12) Variable = Amp Peak 13(Xq25) mutation analysis
D12V1, survival
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 13(XQ25) MUTATED" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 13(XQ25) MUTATED" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 13(XQ25) MUTATED" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 13(XQ25) WILD-TYPE"   "AMP PEAK 13(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 13(XQ25) WILD-TYPE" "AMP PEAK 13(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 13(XQ25) WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 13(XQ25) MUTATED      3    0
  AMP PEAK 13(XQ25) WILD-TYPE  115    5
     clus
vv    AMP PEAK 13(XQ25) MUTATED AMP PEAK 13(XQ25) WILD-TYPE
  NO                          0                           5
  YES                         3                         115
D12V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 13(XQ25) MUTATED      3    0
  AMP PEAK 13(XQ25) WILD-TYPE  116    4
     clus
vv    AMP PEAK 13(XQ25) MUTATED AMP PEAK 13(XQ25) WILD-TYPE
  NO                          0                           4
  YES                         3                         116

Clustering(13) Variable = Amp Peak 14(Xq25) mutation analysis
D13V1, survival
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "AMP PEAK 14(XQ25) MUTATED" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"AMP PEAK 14(XQ25) WILD-TYPE"   "AMP PEAK 14(XQ25) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 14(XQ25) WILD-TYPE" "AMP PEAK 14(XQ25) WILD-TYPE" 
                 TCGA-HI-7171 
"AMP PEAK 14(XQ25) WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
D13V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 14(XQ25) MUTATED      6    0
  AMP PEAK 14(XQ25) WILD-TYPE  112    5
     clus
vv    AMP PEAK 14(XQ25) MUTATED AMP PEAK 14(XQ25) WILD-TYPE
  NO                          0                           5
  YES                         6                         112
D13V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 14(XQ25) MUTATED      6    0
  AMP PEAK 14(XQ25) WILD-TYPE  113    4
     clus
vv    AMP PEAK 14(XQ25) MUTATED AMP PEAK 14(XQ25) WILD-TYPE
  NO                          0                           4
  YES                         6                         113

Clustering(14) Variable = Amp Peak 15(Xq27.1) mutation analysis
D14V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK 15(XQ27.1) MUTATED"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK 15(XQ27.1) MUTATED"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
  "AMP PEAK 15(XQ27.1) MUTATED"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 15(XQ27.1) WILD-TYPE"   "AMP PEAK 15(XQ27.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "AMP PEAK 15(XQ27.1) MUTATED" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 15(XQ27.1) WILD-TYPE" "AMP PEAK 15(XQ27.1) WILD-TYPE" 
                   TCGA-HI-7171 
"AMP PEAK 15(XQ27.1) WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(XQ27.1) MUTATED      7    0
  AMP PEAK 15(XQ27.1) WILD-TYPE  111    5
     clus
vv    AMP PEAK 15(XQ27.1) MUTATED AMP PEAK 15(XQ27.1) WILD-TYPE
  NO                            0                             5
  YES                           7                           111
D14V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(XQ27.1) MUTATED      7    0
  AMP PEAK 15(XQ27.1) WILD-TYPE  112    4
     clus
vv    AMP PEAK 15(XQ27.1) MUTATED AMP PEAK 15(XQ27.1) WILD-TYPE
  NO                            0                             4
  YES                           7                           112

Clustering(15) Variable = Del Peak  1(1p31.3) mutation analysis
D15V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  1(1P31.3) MUTATED"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  1(1P31.3) MUTATED"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  1(1P31.3) MUTATED" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  1(1P31.3) WILD-TYPE"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  1(1P31.3) MUTATED"   "DEL PEAK  1(1P31.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  1(1P31.3) WILD-TYPE" "DEL PEAK  1(1P31.3) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  1(1P31.3) MUTATED" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P31.3) MUTATED     16    0
  DEL PEAK  1(1P31.3) WILD-TYPE  102    5
     clus
vv    DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  NO                            0                             5
  YES                          16                           102
D15V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P31.3) MUTATED     16    0
  DEL PEAK  1(1P31.3) WILD-TYPE  103    4
     clus
vv    DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  NO                            0                             4
  YES                          16                           103

Clustering(16) Variable = Del Peak  2(1p13.3) mutation analysis
D16V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK  2(1P13.3) MUTATED" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  2(1P13.3) WILD-TYPE"   "DEL PEAK  2(1P13.3) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  2(1P13.3) WILD-TYPE" "DEL PEAK  2(1P13.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  2(1P13.3) WILD-TYPE" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.3) MUTATED     12    0
  DEL PEAK  2(1P13.3) WILD-TYPE  106    5
     clus
vv    DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  NO                            0                             5
  YES                          12                           106
D16V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.3) MUTATED     12    0
  DEL PEAK  2(1P13.3) WILD-TYPE  107    4
     clus
vv    DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  NO                            0                             4
  YES                          12                           107

Clustering(17) Variable = Del Peak  3(1q23.1) mutation analysis
D17V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  3(1Q23.1) MUTATED" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  3(1Q23.1) MUTATED" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  3(1Q23.1) MUTATED" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  3(1Q23.1) WILD-TYPE"   "DEL PEAK  3(1Q23.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  3(1Q23.1) WILD-TYPE" "DEL PEAK  3(1Q23.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  3(1Q23.1) WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q23.1) MUTATED      3    0
  DEL PEAK  3(1Q23.1) WILD-TYPE  115    5
     clus
vv    DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  NO                            0                             5
  YES                           3                           115
D17V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q23.1) MUTATED      3    0
  DEL PEAK  3(1Q23.1) WILD-TYPE  116    4
     clus
vv    DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  NO                            0                             4
  YES                           3                           116

Clustering(18) Variable = Del Peak  4(1q42.2) mutation analysis
D18V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  4(1Q42.2) MUTATED" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  4(1Q42.2) WILD-TYPE"   "DEL PEAK  4(1Q42.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  4(1Q42.2) WILD-TYPE" "DEL PEAK  4(1Q42.2) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  4(1Q42.2) MUTATED" 
[1] "hr=" "1"  
D18V2, continuous
D18V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1Q42.2) MUTATED     11    0
  DEL PEAK  4(1Q42.2) WILD-TYPE  107    5
     clus
vv    DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  NO                            0                             5
  YES                          11                           107
D18V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(1Q42.2) MUTATED     11    0
  DEL PEAK  4(1Q42.2) WILD-TYPE  108    4
     clus
vv    DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  NO                            0                             4
  YES                          11                           108

Clustering(19) Variable = Del Peak  5(2q22.1) mutation analysis
D19V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK  5(2Q22.1) MUTATED"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK  5(2Q22.1) MUTATED"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  5(2Q22.1) WILD-TYPE"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK  5(2Q22.1) MUTATED"   "DEL PEAK  5(2Q22.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK  5(2Q22.1) MUTATED" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  5(2Q22.1) WILD-TYPE" "DEL PEAK  5(2Q22.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  5(2Q22.1) MUTATED" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q22.1) MUTATED     14    0
  DEL PEAK  5(2Q22.1) WILD-TYPE  104    5
     clus
vv    DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  NO                            0                             5
  YES                          14                           104
D19V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q22.1) MUTATED     13    1
  DEL PEAK  5(2Q22.1) WILD-TYPE  106    3
     clus
vv    DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  NO                            1                             3
  YES                          13                           106

Clustering(20) Variable = Del Peak  6(2q31.1) mutation analysis
D20V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  6(2Q31.1) WILD-TYPE"   "DEL PEAK  6(2Q31.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  6(2Q31.1) WILD-TYPE" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
  "DEL PEAK  6(2Q31.1) MUTATED" "DEL PEAK  6(2Q31.1) WILD-TYPE" 
                   TCGA-HI-7171 
  "DEL PEAK  6(2Q31.1) MUTATED" 
[1] "hr=" "1"  
D20V2, continuous
D20V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q31.1) MUTATED     15    0
  DEL PEAK  6(2Q31.1) WILD-TYPE  103    5
     clus
vv    DEL PEAK  6(2Q31.1) MUTATED DEL PEAK  6(2Q31.1) WILD-TYPE
  NO                            0                             5
  YES                          15                           103
D20V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q31.1) MUTATED     15    0
  DEL PEAK  6(2Q31.1) WILD-TYPE  104    4
     clus
vv    DEL PEAK  6(2Q31.1) MUTATED DEL PEAK  6(2Q31.1) WILD-TYPE
  NO                            0                             4
  YES                          15                           104

Clustering(21) Variable = Del Peak  7(3p13) mutation analysis
D21V1, survival
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5739                  TCGA-CH-5740 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  7(3P13) MUTATED"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5739                  TCGA-CH-5740 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  7(3P13) MUTATED"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5739                  TCGA-CH-5740 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  7(3P13) MUTATED" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  7(3P13) MUTATED"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  7(3P13) WILD-TYPE"   "DEL PEAK  7(3P13) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  7(3P13) WILD-TYPE" "DEL PEAK  7(3P13) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  7(3P13) WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
D21V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED     18    3
  DEL PEAK  7(3P13) WILD-TYPE  100    2
     clus
vv    DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  NO                          3                           2
  YES                        18                         100
D21V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED     19    2
  DEL PEAK  7(3P13) WILD-TYPE  100    2
     clus
vv    DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  NO                          2                           2
  YES                        19                         100

Clustering(22) Variable = Del Peak  8(3q29) mutation analysis
D22V1, survival
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5748                  TCGA-CH-5750 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5761                  TCGA-CH-5762 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5767                  TCGA-CH-5768 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
  "DEL PEAK  8(3Q29) MUTATED" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK  8(3Q29) WILD-TYPE"   "DEL PEAK  8(3Q29) MUTATED" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK  8(3Q29) WILD-TYPE" "DEL PEAK  8(3Q29) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK  8(3Q29) WILD-TYPE" 
[1] "hr=" "1"  
D22V2, continuous
D22V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(3Q29) MUTATED      7    2
  DEL PEAK  8(3Q29) WILD-TYPE  111    3
     clus
vv    DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  NO                          2                           3
  YES                         7                         111
D22V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(3Q29) MUTATED      9    0
  DEL PEAK  8(3Q29) WILD-TYPE  110    4
     clus
vv    DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  NO                          0                           4
  YES                         9                         110

Clustering(23) Variable = Del Peak  9(4q28.2) mutation analysis
D23V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK  9(4Q28.2) MUTATED" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK  9(4Q28.2) WILD-TYPE"   "DEL PEAK  9(4Q28.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK  9(4Q28.2) WILD-TYPE" "DEL PEAK  9(4Q28.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK  9(4Q28.2) WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
D23V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q28.2) MUTATED     12    0
  DEL PEAK  9(4Q28.2) WILD-TYPE  106    5
     clus
vv    DEL PEAK  9(4Q28.2) MUTATED DEL PEAK  9(4Q28.2) WILD-TYPE
  NO                            0                             5
  YES                          12                           106
D23V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q28.2) MUTATED     11    1
  DEL PEAK  9(4Q28.2) WILD-TYPE  108    3
     clus
vv    DEL PEAK  9(4Q28.2) MUTATED DEL PEAK  9(4Q28.2) WILD-TYPE
  NO                            1                             3
  YES                          11                           108

Clustering(24) Variable = Del Peak 10(5q11.2) mutation analysis
D24V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 10(5Q11.2) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     19    0
  DEL PEAK 10(5Q11.2) WILD-TYPE   99    5
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                            0                             5
  YES                          19                            99
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     18    1
  DEL PEAK 10(5Q11.2) WILD-TYPE  101    3
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                            1                             3
  YES                          18                           101

Clustering(25) Variable = Del Peak 11(5q21.1) mutation analysis
D25V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 11(5Q21.1) MUTATED" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 11(5Q21.1) MUTATED"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 11(5Q21.1) WILD-TYPE"   "DEL PEAK 11(5Q21.1) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 11(5Q21.1) WILD-TYPE" "DEL PEAK 11(5Q21.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 11(5Q21.1) WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q21.1) MUTATED     25    0
  DEL PEAK 11(5Q21.1) WILD-TYPE   93    5
     clus
vv    DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  NO                            0                             5
  YES                          25                            93
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q21.1) MUTATED     23    2
  DEL PEAK 11(5Q21.1) WILD-TYPE   96    2
     clus
vv    DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  NO                            2                             2
  YES                          23                            96

Clustering(26) Variable = Del Peak 12(5q22.3) mutation analysis
D26V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 12(5Q22.3) MUTATED"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 12(5Q22.3) MUTATED"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 12(5Q22.3) MUTATED" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 12(5Q22.3) MUTATED"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 12(5Q22.3) WILD-TYPE"   "DEL PEAK 12(5Q22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 12(5Q22.3) WILD-TYPE" "DEL PEAK 12(5Q22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 12(5Q22.3) WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q22.3) MUTATED     14    0
  DEL PEAK 12(5Q22.3) WILD-TYPE  104    5
     clus
vv    DEL PEAK 12(5Q22.3) MUTATED DEL PEAK 12(5Q22.3) WILD-TYPE
  NO                            0                             5
  YES                          14                           104
D26V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q22.3) MUTATED     13    1
  DEL PEAK 12(5Q22.3) WILD-TYPE  106    3
     clus
vv    DEL PEAK 12(5Q22.3) MUTATED DEL PEAK 12(5Q22.3) WILD-TYPE
  NO                            1                             3
  YES                          13                           106

Clustering(27) Variable = Del Peak 13(6q15) mutation analysis
D27V1, survival
                 TCGA-CH-5737                  TCGA-CH-5738 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5761                  TCGA-CH-5762 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5767                  TCGA-CH-5768 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5761                  TCGA-CH-5762 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5767                  TCGA-CH-5768 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5737                  TCGA-CH-5738 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5748                  TCGA-CH-5750 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5751                  TCGA-CH-5752 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5753                  TCGA-CH-5754 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5761                  TCGA-CH-5762 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5763                  TCGA-CH-5764 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5765                  TCGA-CH-5766 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5767                  TCGA-CH-5768 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5769                  TCGA-CH-5771 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5772                  TCGA-CH-5788 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5789                  TCGA-CH-5790 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-CH-5791                  TCGA-CH-5792 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-CH-5794                  TCGA-EJ-5494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7327 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7328                  TCGA-EJ-7330 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7331                  TCGA-EJ-7781 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-EJ-7789                  TCGA-EJ-7791 
  "DEL PEAK 13(6Q15) MUTATED" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-EJ-7792                  TCGA-EJ-7794 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-FC-7708                  TCGA-G9-6329 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6332                  TCGA-G9-6333 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6336                  TCGA-G9-6338 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6348                  TCGA-G9-6351 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6353                  TCGA-G9-6356 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"DEL PEAK 13(6Q15) WILD-TYPE"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6373                  TCGA-G9-6377 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6378                  TCGA-G9-6384 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6499 
  "DEL PEAK 13(6Q15) MUTATED"   "DEL PEAK 13(6Q15) MUTATED" 
                 TCGA-H9-7775                  TCGA-HC-7230 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HC-7231                  TCGA-HI-7168 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"DEL PEAK 13(6Q15) WILD-TYPE" "DEL PEAK 13(6Q15) WILD-TYPE" 
                 TCGA-HI-7171 
"DEL PEAK 13(6Q15) WILD-TYPE" 
[1] "hr=" "1"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q15) MUTATED     41    0
  DEL PEAK 13(6Q15) WILD-TYPE   77    5
     clus
vv    DEL PEAK 13(6Q15) MUTATED DEL PEAK 13(6Q15) WILD-TYPE
  NO                          0                           5
  YES                        41                          77
D27V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q15) MUTATED     39    2
  DEL PEAK 13(6Q15) WILD-TYPE   80    2
     clus
vv    DEL PEAK 13(6Q15) MUTATED DEL PEAK 13(6Q15) WILD-TYPE
  NO                          2                           2
  YES                        39                          80

Clustering(28) Variable = Del Peak 14(7q36.1) mutation analysis
D28V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 14(7Q36.1) WILD-TYPE"   "DEL PEAK 14(7Q36.1) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 14(7Q36.1) MUTATED" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 14(7Q36.1) WILD-TYPE" "DEL PEAK 14(7Q36.1) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 14(7Q36.1) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q36.1) MUTATED      5    0
  DEL PEAK 14(7Q36.1) WILD-TYPE  113    5
     clus
vv    DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  NO                            0                             5
  YES                           5                           113
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q36.1) MUTATED      5    0
  DEL PEAK 14(7Q36.1) WILD-TYPE  114    4
     clus
vv    DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  NO                            0                             4
  YES                           5                           114

Clustering(29) Variable = Del Peak 15(8p21.3) mutation analysis
D29V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7171 
  "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7171 
  "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5753                    TCGA-CH-5754 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5761                    TCGA-CH-5762 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5765                    TCGA-CH-5766 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5767                    TCGA-CH-5768 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5769                    TCGA-CH-5771 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5791                    TCGA-CH-5792 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6342                    TCGA-G9-6343 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 15(8P21.3) WILD-TYPE" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6363                    TCGA-G9-6364 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6373                    TCGA-G9-6377 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-G9-6496                    TCGA-G9-6499 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
  "DEL PEAK 15(8P21.3) MUTATED" "DEL PEAK 15(8P21.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
  "DEL PEAK 15(8P21.3) MUTATED"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 15(8P21.3) WILD-TYPE"   "DEL PEAK 15(8P21.3) MUTATED" 
                   TCGA-HI-7171 
  "DEL PEAK 15(8P21.3) MUTATED" 
[1] "hr=" "1"  
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P21.3) MUTATED     71    3
  DEL PEAK 15(8P21.3) WILD-TYPE   47    2
     clus
vv    DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  NO                            3                             2
  YES                          71                            47
D29V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P21.3) MUTATED     70    4
  DEL PEAK 15(8P21.3) WILD-TYPE   49    0
     clus
vv    DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  NO                            4                             0
  YES                          70                            49

Clustering(30) Variable = Del Peak 16(8p11.21) mutation analysis
D30V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 16(8P11.21) MUTATED"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 16(8P11.21) MUTATED" 
[1] "hr=" "1"  
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     43    0
  DEL PEAK 16(8P11.21) WILD-TYPE   75    5
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  NO                             0                              5
  YES                           43                             75
D30V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     43    0
  DEL PEAK 16(8P11.21) WILD-TYPE   76    4
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  NO                             0                              4
  YES                           43                             76

Clustering(31) Variable = Del Peak 17(9p22.3) mutation analysis
D31V1, survival
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 17(9P22.3) MUTATED"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 17(9P22.3) MUTATED"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5737                    TCGA-CH-5738 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5746 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-CH-5748                    TCGA-CH-5750 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5751                    TCGA-CH-5752 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5753                    TCGA-CH-5754 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5761                    TCGA-CH-5762 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5763                    TCGA-CH-5764 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5765                    TCGA-CH-5766 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5767                    TCGA-CH-5768 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5769                    TCGA-CH-5771 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5772                    TCGA-CH-5788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5789                    TCGA-CH-5790 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5791                    TCGA-CH-5792 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-CH-5794                    TCGA-EJ-5494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5495                    TCGA-EJ-5496 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5497                    TCGA-EJ-5498 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5499                    TCGA-EJ-5501 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5502                    TCGA-EJ-5503 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5504                    TCGA-EJ-5505 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5506                    TCGA-EJ-5507 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5508                    TCGA-EJ-5509 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5510                    TCGA-EJ-5511 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5512                    TCGA-EJ-5514 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5515                    TCGA-EJ-5516 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5517                    TCGA-EJ-5518 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5519                    TCGA-EJ-5521 
  "DEL PEAK 17(9P22.3) MUTATED"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-5522                    TCGA-EJ-5524 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5525                    TCGA-EJ-5526 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5527                    TCGA-EJ-5530 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5531                    TCGA-EJ-5532 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-5542                    TCGA-EJ-7115 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7123                    TCGA-EJ-7125 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7327 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-EJ-7782                    TCGA-EJ-7783 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7784                    TCGA-EJ-7785 
  "DEL PEAK 17(9P22.3) MUTATED" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7786                    TCGA-EJ-7788 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7789                    TCGA-EJ-7791 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7794 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-FC-7708                    TCGA-G9-6329 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6332                    TCGA-G9-6333 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6336                    TCGA-G9-6338 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6342                    TCGA-G9-6343 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6348                    TCGA-G9-6351 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6369 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6370                    TCGA-G9-6371 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6373                    TCGA-G9-6377 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-G9-6378                    TCGA-G9-6384 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6385                    TCGA-G9-6494 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-H9-7775                    TCGA-HC-7230 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HC-7231                    TCGA-HI-7168 
"DEL PEAK 17(9P22.3) WILD-TYPE"   "DEL PEAK 17(9P22.3) MUTATED" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"DEL PEAK 17(9P22.3) WILD-TYPE" "DEL PEAK 17(9P22.3) WILD-TYPE" 
                   TCGA-HI-7171 
"DEL PEAK 17(9P22.3) WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P22.3) MUTATED     10    1
  DEL PEAK 17(9P22.3) WILD-TYPE  108    4
     clus
vv    DEL PEAK 17(9P22.3) MUTATED DEL PEAK 17(9P22.3) WILD-TYPE
  NO                            1                             4
  YES                          10                           108
D31V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(9P22.3) MUTATED     10    1
  DEL PEAK 17(9P22.3) WILD-TYPE  109    3
     clus
vv    DEL PEAK 17(9P22.3) MUTATED DEL PEAK 17(9P22.3) WILD-TYPE
  NO                            1                             3
  YES                          10                           109

Clustering(32) Variable = Del Peak 18(10q23.31) mutation analysis
D32V1, survival
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5791                      TCGA-CH-5792 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5791                      TCGA-CH-5792 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-CH-5791                      TCGA-CH-5792 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 18(10Q23.31) MUTATED" 
[1] "hr=" "1"  
D32V2, continuous
D32V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED     44    1
  DEL PEAK 18(10Q23.31) WILD-TYPE   74    4
     clus
vv    DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  NO                              1                               4
  YES                            44                              74
D32V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED     43    2
  DEL PEAK 18(10Q23.31) WILD-TYPE   76    2
     clus
vv    DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  NO                              2                               2
  YES                            43                              76

Clustering(33) Variable = Del Peak 19(11q23.2) mutation analysis
D33V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 19(11Q23.2) MUTATED" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 19(11Q23.2) WILD-TYPE"   "DEL PEAK 19(11Q23.2) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 19(11Q23.2) WILD-TYPE" "DEL PEAK 19(11Q23.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 19(11Q23.2) WILD-TYPE" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q23.2) MUTATED     14    0
  DEL PEAK 19(11Q23.2) WILD-TYPE  104    5
     clus
vv    DEL PEAK 19(11Q23.2) MUTATED DEL PEAK 19(11Q23.2) WILD-TYPE
  NO                             0                              5
  YES                           14                            104
D33V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q23.2) MUTATED     14    0
  DEL PEAK 19(11Q23.2) WILD-TYPE  105    4
     clus
vv    DEL PEAK 19(11Q23.2) MUTATED DEL PEAK 19(11Q23.2) WILD-TYPE
  NO                             0                              4
  YES                           14                            105

Clustering(34) Variable = Del Peak 20(12p13.2) mutation analysis
D34V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 20(12P13.2) MUTATED" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 20(12P13.2) MUTATED"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 20(12P13.2) WILD-TYPE"   "DEL PEAK 20(12P13.2) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 20(12P13.2) WILD-TYPE" "DEL PEAK 20(12P13.2) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 20(12P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.2) MUTATED     28    1
  DEL PEAK 20(12P13.2) WILD-TYPE   90    4
     clus
vv    DEL PEAK 20(12P13.2) MUTATED DEL PEAK 20(12P13.2) WILD-TYPE
  NO                             1                              4
  YES                           28                             90
D34V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.2) MUTATED     27    2
  DEL PEAK 20(12P13.2) WILD-TYPE   92    2
     clus
vv    DEL PEAK 20(12P13.2) MUTATED DEL PEAK 20(12P13.2) WILD-TYPE
  NO                             2                              2
  YES                           27                             92

Clustering(35) Variable = Del Peak 21(12q24.33) mutation analysis
D35V1, survival
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HI-7171 
"DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HI-7171 
"DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
  "DEL PEAK 21(12Q24.33) MUTATED" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 21(12Q24.33) WILD-TYPE"   "DEL PEAK 21(12Q24.33) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 21(12Q24.33) WILD-TYPE" "DEL PEAK 21(12Q24.33) WILD-TYPE" 
                     TCGA-HI-7171 
"DEL PEAK 21(12Q24.33) WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q24.33) MUTATED     10    0
  DEL PEAK 21(12Q24.33) WILD-TYPE  108    5
     clus
vv    DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  NO                              0                               5
  YES                            10                             108
D35V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q24.33) MUTATED     10    0
  DEL PEAK 21(12Q24.33) WILD-TYPE  109    4
     clus
vv    DEL PEAK 21(12Q24.33) MUTATED DEL PEAK 21(12Q24.33) WILD-TYPE
  NO                              0                               4
  YES                            10                             109

Clustering(36) Variable = Del Peak 22(13q14.13) mutation analysis
D36V1, survival
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5765                      TCGA-CH-5766 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5772                      TCGA-CH-5788 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5765                      TCGA-CH-5766 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5772                      TCGA-CH-5788 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5751                      TCGA-CH-5752 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5765                      TCGA-CH-5766 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5772                      TCGA-CH-5788 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6378                      TCGA-G9-6384 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 22(13Q14.13) WILD-TYPE"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-H9-7775                      TCGA-HC-7230 
  "DEL PEAK 22(13Q14.13) MUTATED" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
  "DEL PEAK 22(13Q14.13) MUTATED"   "DEL PEAK 22(13Q14.13) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 22(13Q14.13) WILD-TYPE" "DEL PEAK 22(13Q14.13) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 22(13Q14.13) MUTATED" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(13Q14.13) MUTATED     51    4
  DEL PEAK 22(13Q14.13) WILD-TYPE   67    1
     clus
vv    DEL PEAK 22(13Q14.13) MUTATED DEL PEAK 22(13Q14.13) WILD-TYPE
  NO                              4                               1
  YES                            51                              67
D36V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(13Q14.13) MUTATED     52    3
  DEL PEAK 22(13Q14.13) WILD-TYPE   67    1
     clus
vv    DEL PEAK 22(13Q14.13) MUTATED DEL PEAK 22(13Q14.13) WILD-TYPE
  NO                              3                               1
  YES                            52                              67

Clustering(37) Variable = Del Peak 23(16q22.3) mutation analysis
D37V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 23(16Q22.3) MUTATED" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 23(16Q22.3) MUTATED"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 23(16Q22.3) WILD-TYPE"   "DEL PEAK 23(16Q22.3) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 23(16Q22.3) WILD-TYPE" "DEL PEAK 23(16Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 23(16Q22.3) MUTATED" 
[1] "hr=" "1"  
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(16Q22.3) MUTATED     38    0
  DEL PEAK 23(16Q22.3) WILD-TYPE   80    5
     clus
vv    DEL PEAK 23(16Q22.3) MUTATED DEL PEAK 23(16Q22.3) WILD-TYPE
  NO                             0                              5
  YES                           38                             80
D37V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(16Q22.3) MUTATED     36    2
  DEL PEAK 23(16Q22.3) WILD-TYPE   83    2
     clus
vv    DEL PEAK 23(16Q22.3) MUTATED DEL PEAK 23(16Q22.3) WILD-TYPE
  NO                             2                              2
  YES                           36                             83

Clustering(38) Variable = Del Peak 24(16q24.1) mutation analysis
D38V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 24(16Q24.1) MUTATED" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
  "DEL PEAK 24(16Q24.1) MUTATED"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 24(16Q24.1) WILD-TYPE"   "DEL PEAK 24(16Q24.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 24(16Q24.1) WILD-TYPE" "DEL PEAK 24(16Q24.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 24(16Q24.1) MUTATED" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(16Q24.1) MUTATED     48    2
  DEL PEAK 24(16Q24.1) WILD-TYPE   70    3
     clus
vv    DEL PEAK 24(16Q24.1) MUTATED DEL PEAK 24(16Q24.1) WILD-TYPE
  NO                             2                              3
  YES                           48                             70
D38V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(16Q24.1) MUTATED     48    2
  DEL PEAK 24(16Q24.1) WILD-TYPE   71    2
     clus
vv    DEL PEAK 24(16Q24.1) MUTATED DEL PEAK 24(16Q24.1) WILD-TYPE
  NO                             2                              2
  YES                           48                             71

Clustering(39) Variable = Del Peak 25(17p13.1) mutation analysis
D39V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 25(17P13.1) MUTATED" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 25(17P13.1) WILD-TYPE"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 25(17P13.1) MUTATED"   "DEL PEAK 25(17P13.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 25(17P13.1) WILD-TYPE" "DEL PEAK 25(17P13.1) WILD-TYPE" 
                    TCGA-HI-7171 
  "DEL PEAK 25(17P13.1) MUTATED" 
[1] "hr=" "1"  
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P13.1) MUTATED     30    1
  DEL PEAK 25(17P13.1) WILD-TYPE   88    4
     clus
vv    DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  NO                             1                              4
  YES                           30                             88
D39V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(17P13.1) MUTATED     30    1
  DEL PEAK 25(17P13.1) WILD-TYPE   89    3
     clus
vv    DEL PEAK 25(17P13.1) MUTATED DEL PEAK 25(17P13.1) WILD-TYPE
  NO                             1                              3
  YES                           30                             89

Clustering(40) Variable = Del Peak 26(17q21.31) mutation analysis
D40V1, survival
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5737                      TCGA-CH-5738 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5739                      TCGA-CH-5740 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5741                      TCGA-CH-5743 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5744                      TCGA-CH-5746 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5748                      TCGA-CH-5750 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5751                      TCGA-CH-5752 
  "DEL PEAK 26(17Q21.31) MUTATED"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5753                      TCGA-CH-5754 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5761                      TCGA-CH-5762 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5763                      TCGA-CH-5764 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5765                      TCGA-CH-5766 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5767                      TCGA-CH-5768 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-CH-5769                      TCGA-CH-5771 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5772                      TCGA-CH-5788 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5789                      TCGA-CH-5790 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5791                      TCGA-CH-5792 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-CH-5794                      TCGA-EJ-5494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5495                      TCGA-EJ-5496 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5497                      TCGA-EJ-5498 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5499                      TCGA-EJ-5501 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5502                      TCGA-EJ-5503 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5504                      TCGA-EJ-5505 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5506                      TCGA-EJ-5507 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5508                      TCGA-EJ-5509 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5510                      TCGA-EJ-5511 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5512                      TCGA-EJ-5514 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5515                      TCGA-EJ-5516 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5517                      TCGA-EJ-5518 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5519                      TCGA-EJ-5521 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5522                      TCGA-EJ-5524 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-5525                      TCGA-EJ-5526 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5527                      TCGA-EJ-5530 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5531                      TCGA-EJ-5532 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-5542                      TCGA-EJ-7115 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7123                      TCGA-EJ-7125 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7314                      TCGA-EJ-7315 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7317                      TCGA-EJ-7327 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7328                      TCGA-EJ-7330 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7331                      TCGA-EJ-7781 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7782                      TCGA-EJ-7783 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7784                      TCGA-EJ-7785 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7786                      TCGA-EJ-7788 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-EJ-7789                      TCGA-EJ-7791 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-EJ-7792                      TCGA-EJ-7794 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-FC-7708                      TCGA-G9-6329 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6332                      TCGA-G9-6333 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6336                      TCGA-G9-6338 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6342                      TCGA-G9-6343 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6348                      TCGA-G9-6351 
  "DEL PEAK 26(17Q21.31) MUTATED" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6353                      TCGA-G9-6356 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6361                      TCGA-G9-6362 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6363                      TCGA-G9-6364 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6365                      TCGA-G9-6366 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6367                      TCGA-G9-6369 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6370                      TCGA-G9-6371 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6373                      TCGA-G9-6377 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-G9-6378                      TCGA-G9-6384 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6385                      TCGA-G9-6494 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-G9-6496                      TCGA-G9-6499 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-H9-7775                      TCGA-HC-7230 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HC-7231                      TCGA-HI-7168 
"DEL PEAK 26(17Q21.31) WILD-TYPE"   "DEL PEAK 26(17Q21.31) MUTATED" 
                     TCGA-HI-7169                      TCGA-HI-7170 
"DEL PEAK 26(17Q21.31) WILD-TYPE" "DEL PEAK 26(17Q21.31) WILD-TYPE" 
                     TCGA-HI-7171 
  "DEL PEAK 26(17Q21.31) MUTATED" 
[1] "hr=" "1"  
D40V2, continuous
D40V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(17Q21.31) MUTATED     20    1
  DEL PEAK 26(17Q21.31) WILD-TYPE   98    4
     clus
vv    DEL PEAK 26(17Q21.31) MUTATED DEL PEAK 26(17Q21.31) WILD-TYPE
  NO                              1                               4
  YES                            20                              98
D40V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(17Q21.31) MUTATED     19    2
  DEL PEAK 26(17Q21.31) WILD-TYPE  100    2
     clus
vv    DEL PEAK 26(17Q21.31) MUTATED DEL PEAK 26(17Q21.31) WILD-TYPE
  NO                              2                               2
  YES                            19                             100

Clustering(41) Variable = Del Peak 27(18q22.1) mutation analysis
D41V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-FC-7708                     TCGA-G9-6329 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 27(18Q22.1) MUTATED" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
  "DEL PEAK 27(18Q22.1) MUTATED"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 27(18Q22.1) WILD-TYPE" "DEL PEAK 27(18Q22.1) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HC-7231                     TCGA-HI-7168 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 27(18Q22.1) WILD-TYPE"   "DEL PEAK 27(18Q22.1) MUTATED" 
                    TCGA-HI-7171 
  "DEL PEAK 27(18Q22.1) MUTATED" 
[1] "hr=" "1"  
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(18Q22.1) MUTATED     29    1
  DEL PEAK 27(18Q22.1) WILD-TYPE   89    4
     clus
vv    DEL PEAK 27(18Q22.1) MUTATED DEL PEAK 27(18Q22.1) WILD-TYPE
  NO                             1                              4
  YES                           29                             89
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(18Q22.1) MUTATED     30    0
  DEL PEAK 27(18Q22.1) WILD-TYPE   89    4
     clus
vv    DEL PEAK 27(18Q22.1) MUTATED DEL PEAK 27(18Q22.1) WILD-TYPE
  NO                             0                              4
  YES                           30                             89

Clustering(42) Variable = Del Peak 28(18q23) mutation analysis
D42V1, survival
                  TCGA-CH-5737                   TCGA-CH-5738 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5739                   TCGA-CH-5740 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5741                   TCGA-CH-5743 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5744                   TCGA-CH-5746 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5748                   TCGA-CH-5750 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5751                   TCGA-CH-5752 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5753                   TCGA-CH-5754 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5761                   TCGA-CH-5762 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5763                   TCGA-CH-5764 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5765                   TCGA-CH-5766 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5767                   TCGA-CH-5768 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5769                   TCGA-CH-5771 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5772                   TCGA-CH-5788 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5789                   TCGA-CH-5790 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5791                   TCGA-CH-5792 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5794                   TCGA-EJ-5494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5495                   TCGA-EJ-5496 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5497                   TCGA-EJ-5498 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5499                   TCGA-EJ-5501 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5502                   TCGA-EJ-5503 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5504                   TCGA-EJ-5505 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5506                   TCGA-EJ-5507 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5508                   TCGA-EJ-5509 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5510                   TCGA-EJ-5511 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5512                   TCGA-EJ-5514 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5515                   TCGA-EJ-5516 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5517                   TCGA-EJ-5518 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5519                   TCGA-EJ-5521 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5522                   TCGA-EJ-5524 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5525                   TCGA-EJ-5526 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5527                   TCGA-EJ-5530 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5531                   TCGA-EJ-5532 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5542                   TCGA-EJ-7115 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7123                   TCGA-EJ-7125 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7314                   TCGA-EJ-7315 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7317                   TCGA-EJ-7327 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7328                   TCGA-EJ-7330 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7331                   TCGA-EJ-7781 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7782                   TCGA-EJ-7783 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7784                   TCGA-EJ-7785 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7786                   TCGA-EJ-7788 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7789                   TCGA-EJ-7791 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7792                   TCGA-EJ-7794 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-FC-7708                   TCGA-G9-6329 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6332                   TCGA-G9-6333 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6336                   TCGA-G9-6338 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6342                   TCGA-G9-6343 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6348                   TCGA-G9-6351 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6353                   TCGA-G9-6356 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6361                   TCGA-G9-6362 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6363                   TCGA-G9-6364 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6365                   TCGA-G9-6366 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6367                   TCGA-G9-6369 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6370                   TCGA-G9-6371 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6373                   TCGA-G9-6377 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6378                   TCGA-G9-6384 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6385                   TCGA-G9-6494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6496                   TCGA-G9-6499 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-H9-7775                   TCGA-HC-7230 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HC-7231                   TCGA-HI-7168 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7169                   TCGA-HI-7170 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7171 
  "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5737                   TCGA-CH-5738 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5739                   TCGA-CH-5740 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5741                   TCGA-CH-5743 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5744                   TCGA-CH-5746 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5748                   TCGA-CH-5750 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5751                   TCGA-CH-5752 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5753                   TCGA-CH-5754 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5761                   TCGA-CH-5762 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5763                   TCGA-CH-5764 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5765                   TCGA-CH-5766 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5767                   TCGA-CH-5768 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5769                   TCGA-CH-5771 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5772                   TCGA-CH-5788 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5789                   TCGA-CH-5790 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5791                   TCGA-CH-5792 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5794                   TCGA-EJ-5494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5495                   TCGA-EJ-5496 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5497                   TCGA-EJ-5498 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5499                   TCGA-EJ-5501 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5502                   TCGA-EJ-5503 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5504                   TCGA-EJ-5505 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5506                   TCGA-EJ-5507 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5508                   TCGA-EJ-5509 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5510                   TCGA-EJ-5511 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5512                   TCGA-EJ-5514 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5515                   TCGA-EJ-5516 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5517                   TCGA-EJ-5518 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5519                   TCGA-EJ-5521 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5522                   TCGA-EJ-5524 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5525                   TCGA-EJ-5526 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5527                   TCGA-EJ-5530 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5531                   TCGA-EJ-5532 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5542                   TCGA-EJ-7115 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7123                   TCGA-EJ-7125 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7314                   TCGA-EJ-7315 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7317                   TCGA-EJ-7327 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7328                   TCGA-EJ-7330 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7331                   TCGA-EJ-7781 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7782                   TCGA-EJ-7783 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7784                   TCGA-EJ-7785 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7786                   TCGA-EJ-7788 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7789                   TCGA-EJ-7791 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7792                   TCGA-EJ-7794 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-FC-7708                   TCGA-G9-6329 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6332                   TCGA-G9-6333 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6336                   TCGA-G9-6338 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6342                   TCGA-G9-6343 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6348                   TCGA-G9-6351 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6353                   TCGA-G9-6356 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6361                   TCGA-G9-6362 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6363                   TCGA-G9-6364 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6365                   TCGA-G9-6366 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6367                   TCGA-G9-6369 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6370                   TCGA-G9-6371 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6373                   TCGA-G9-6377 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6378                   TCGA-G9-6384 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6385                   TCGA-G9-6494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6496                   TCGA-G9-6499 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-H9-7775                   TCGA-HC-7230 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HC-7231                   TCGA-HI-7168 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7169                   TCGA-HI-7170 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7171 
  "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5737                   TCGA-CH-5738 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5739                   TCGA-CH-5740 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5741                   TCGA-CH-5743 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5744                   TCGA-CH-5746 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5748                   TCGA-CH-5750 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5751                   TCGA-CH-5752 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5753                   TCGA-CH-5754 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5761                   TCGA-CH-5762 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5763                   TCGA-CH-5764 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5765                   TCGA-CH-5766 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5767                   TCGA-CH-5768 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-CH-5769                   TCGA-CH-5771 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5772                   TCGA-CH-5788 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5789                   TCGA-CH-5790 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5791                   TCGA-CH-5792 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-CH-5794                   TCGA-EJ-5494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5495                   TCGA-EJ-5496 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5497                   TCGA-EJ-5498 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5499                   TCGA-EJ-5501 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5502                   TCGA-EJ-5503 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5504                   TCGA-EJ-5505 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5506                   TCGA-EJ-5507 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5508                   TCGA-EJ-5509 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5510                   TCGA-EJ-5511 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5512                   TCGA-EJ-5514 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5515                   TCGA-EJ-5516 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5517                   TCGA-EJ-5518 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5519                   TCGA-EJ-5521 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5522                   TCGA-EJ-5524 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-5525                   TCGA-EJ-5526 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5527                   TCGA-EJ-5530 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5531                   TCGA-EJ-5532 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-5542                   TCGA-EJ-7115 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7123                   TCGA-EJ-7125 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7314                   TCGA-EJ-7315 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7317                   TCGA-EJ-7327 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7328                   TCGA-EJ-7330 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7331                   TCGA-EJ-7781 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-EJ-7782                   TCGA-EJ-7783 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7784                   TCGA-EJ-7785 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7786                   TCGA-EJ-7788 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7789                   TCGA-EJ-7791 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-EJ-7792                   TCGA-EJ-7794 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-FC-7708                   TCGA-G9-6329 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6332                   TCGA-G9-6333 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6336                   TCGA-G9-6338 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6342                   TCGA-G9-6343 
  "DEL PEAK 28(18Q23) MUTATED" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6348                   TCGA-G9-6351 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6353                   TCGA-G9-6356 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6361                   TCGA-G9-6362 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6363                   TCGA-G9-6364 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6365                   TCGA-G9-6366 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6367                   TCGA-G9-6369 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6370                   TCGA-G9-6371 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6373                   TCGA-G9-6377 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6378                   TCGA-G9-6384 
  "DEL PEAK 28(18Q23) MUTATED"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-G9-6385                   TCGA-G9-6494 
"DEL PEAK 28(18Q23) WILD-TYPE" "DEL PEAK 28(18Q23) WILD-TYPE" 
                  TCGA-G9-6496                   TCGA-G9-6499 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-H9-7775                   TCGA-HC-7230 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HC-7231                   TCGA-HI-7168 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7169                   TCGA-HI-7170 
"DEL PEAK 28(18Q23) WILD-TYPE"   "DEL PEAK 28(18Q23) MUTATED" 
                  TCGA-HI-7171 
  "DEL PEAK 28(18Q23) MUTATED" 
[1] "hr=" "1"  
D42V2, continuous
D42V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 28(18Q23) MUTATED     34    2
  DEL PEAK 28(18Q23) WILD-TYPE   84    3
     clus
vv    DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE
  NO                           2                            3
  YES                         34                           84
D42V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 28(18Q23) MUTATED     35    1
  DEL PEAK 28(18Q23) WILD-TYPE   84    3
     clus
vv    DEL PEAK 28(18Q23) MUTATED DEL PEAK 28(18Q23) WILD-TYPE
  NO                           1                            3
  YES                         35                           84

Clustering(43) Variable = Del Peak 29(21q22.3) mutation analysis
D43V1, survival
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5737                     TCGA-CH-5738 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5753                     TCGA-CH-5754 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5761                     TCGA-CH-5762 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5765                     TCGA-CH-5766 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5769                     TCGA-CH-5771 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-CH-5791                     TCGA-CH-5792 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5502                     TCGA-EJ-5503 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5504                     TCGA-EJ-5505 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5506                     TCGA-EJ-5507 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5508                     TCGA-EJ-5509 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5510                     TCGA-EJ-5511 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5512                     TCGA-EJ-5514 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7317                     TCGA-EJ-7327 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7794 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-G9-6329 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6332                     TCGA-G9-6333 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6336                     TCGA-G9-6338 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6342                     TCGA-G9-6343 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6348                     TCGA-G9-6351 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6363                     TCGA-G9-6364 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6365                     TCGA-G9-6366 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6369 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6370                     TCGA-G9-6371 
"DEL PEAK 29(21Q22.3) WILD-TYPE"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6373                     TCGA-G9-6377 
  "DEL PEAK 29(21Q22.3) MUTATED"   "DEL PEAK 29(21Q22.3) MUTATED" 
                    TCGA-G9-6378                     TCGA-G9-6384 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6385                     TCGA-G9-6494 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-H9-7775                     TCGA-HC-7230 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HI-7168 
  "DEL PEAK 29(21Q22.3) MUTATED" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"DEL PEAK 29(21Q22.3) WILD-TYPE" "DEL PEAK 29(21Q22.3) WILD-TYPE" 
                    TCGA-HI-7171 
"DEL PEAK 29(21Q22.3) WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(21Q22.3) MUTATED     38    3
  DEL PEAK 29(21Q22.3) WILD-TYPE   80    2
     clus
vv    DEL PEAK 29(21Q22.3) MUTATED DEL PEAK 29(21Q22.3) WILD-TYPE
  NO                             3                              2
  YES                           38                             80
D43V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(21Q22.3) MUTATED     39    2
  DEL PEAK 29(21Q22.3) WILD-TYPE   80    2
     clus
vv    DEL PEAK 29(21Q22.3) MUTATED DEL PEAK 29(21Q22.3) WILD-TYPE
  NO                             2                              2
  YES                           39                             80
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V4 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
