Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_09_13 analyses Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	138	69	90	0	78	0	85	0	88	54	28
BRCA	914	866	855	0	858	529	805	0	821	408	507
CESC	122	32	102	0	0	0	0	0	42	0	36
COAD	423	423	413	69	421	155	11	0	378	269	155
COADREAD	592	591	575	104	584	224	83	0	521	399	224
DLBC	27	0	17	0	0	0	0	0	0	0	0
GBM	598	565	563	0	405	542	0	491	0	214	276
HNSC	312	311	288	86	292	0	286	0	309	212	0
KICH	65	0	0	0	0	0	0	0	0	0	0
KIRC	502	502	490	0	500	72	469	0	480	454	403
KIRP	135	95	103	0	117	16	63	0	43	0	0
LAML	202	200	0	0	192	0	179	0	187	0	199
LGG	181	161	146	0	140	27	47	0	67	0	0
LIHC	99	62	82	0	0	0	17	0	54	0	0
LUAD	439	294	303	0	347	32	263	0	345	237	229
LUSC	360	279	289	0	282	154	223	0	202	195	178
OV	592	580	566	0	557	574	297	570	454	412	316
PAAD	48	0	48	0	30	0	0	0	0	0	0
PANCAN8	4072	3834	3898	210	3638	2149	2115	1061	2856	2283	2152
PRAD	174	127	152	0	153	0	53	0	81	0	83
READ	169	168	162	35	163	69	72	0	143	130	69
SARC	29	0	20	0	0	0	0	0	0	0	0
SKCM	273	138	252	101	240	0	212	0	240	164	0
STAD	226	159	161	0	133	0	57	0	151	0	133
THCA	412	197	268	81	230	0	158	0	331	224	0
UCEC	512	451	444	106	451	54	266	0	377	200	248
Totals	6952	5679	5814	478	5589	2224	3563	1061	4793	3173	2860