rank geneset description genes N_genes mut_tally N n npat nsite nsil n1 n2 n3 n4 n5 n6 p q 1 EOSINOPHILSPATHWAY Recruitment of eosinophils in the inflammatory response observed in asthma occurs via the chemoattractant eotaxin binding to the CCR3 receptor. CCL11, CCL5, CCR3, CSF2, HLA-DRA, HLA-DRB1, IL3, IL5 8 CCR3(3), HLA-DRA(4), HLA-DRB1(1), IL3(3) 657753 11 11 10 2 5 1 0 3 0 2 0.00080 0.35 2 PITX2PATHWAY The bicoid-related transcription factor Pitx2 is activated by Wnt binding to the Frizzled receptor and induces tissue-specific cell proliferation. APC, AXIN1, CREBBP, CTNNB1, DVL1, EP300, FZD1, GSK3B, HDAC1, HTATIP, LDB1, LEF1, PITX2, PPARBP, TRRAP, WNT1 13 AXIN1(1), CREBBP(21), CTNNB1(8), EP300(13), GSK3B(7), HDAC1(2), LDB1(3), LEF1(4), PITX2(2), TRRAP(17), WNT1(1) 6264754 79 46 78 21 33 25 1 8 12 0 0.0014 0.35 3 CTLA4PATHWAY T cell activation requires interaction with an antigen-MHC-I complex on an antigen-presenting cell (APC), as well as CD28 interaction with the APC's CD80 or 86. CD28, CD3D, CD3E, CD3G, CD3Z, CD80, CD86, CTLA4, GRB2, HLA-DRA, HLA-DRB1, ICOS, ICOSL, IL2, ITK, LCK, PIK3CA, PIK3R1, PTPN11, TRA@, TRB@ 16 CD28(1), CD3D(1), CD3G(2), CTLA4(1), GRB2(2), HLA-DRA(4), HLA-DRB1(1), ICOS(1), IL2(3), ITK(8), LCK(2), PIK3R1(5), PTPN11(2) 2423198 33 23 32 7 7 9 2 8 5 2 0.0017 0.35 4 PELP1PATHWAY Pelp1 acts downstream of activated estrogen receptor to promote cell proliferation and is overexpressed in many breast tumors. CREBBP, EP300, ESR1, MAPK1, MAPK3, PELP1, SRC 7 CREBBP(21), EP300(13), ESR1(12), MAPK1(2), MAPK3(2), PELP1(2), SRC(3) 3533262 55 34 55 13 18 20 1 9 7 0 0.0030 0.35 5 GPCRDB_CLASS_A_RHODOPSIN_LIKE ADORA1, ADORA2A, ADORA2B, ADORA3, ADRA1A, ADRA1B, ADRA1D, ADRA2A, ADRA2C, ADRB1, ADRB2, ADRB3, AGTR1, AGTR2, AGTRL1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BLR1, BRS3, C3AR1, C5R1, CCBP2, CCKAR, CCKBR, CCR1, CCR10, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, CCRL1, CCRL2, CHML, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CMKLR1, CMKOR1, CNR1, CNR2, CX3CR1, CXCR3, CXCR4, DRD1, DRD2, DRD3, DRD4, DRD5, EDNRA, EDNRB, ELA3A, F2R, F2RL1, F2RL2, F2RL3, FPR1, FPRL1, FPRL2, FSHR, GALR1, GALR2, GALR3, GALT, GHSR, GNB2L1, GPR10, GPR147, GPR17, GPR173, GPR174, GPR23, GPR24, GPR27, GPR3, GPR30, GPR35, GPR37, GPR37L1, GPR4, GPR44, GPR50, GPR6, GPR63, GPR74, GPR77, GPR83, GPR85, GPR87, GPR92, GRPR, HCRTR1, HCRTR2, HRH1, HRH2, HRH3, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, HTR7, LOC93164, IL8RA, IL8RB, LHCGR, LTB4R, MAS1, MC1R, MC3R, MC4R, MC5R, MLNR, MTNR1A, MTNR1B, NMBR, NMUR1, NMUR2, NPY1R, NPY2R, NPY5R, NPY6R, NTSR1, NTSR2, OPN1SW, OPN3, OPRD1, OPRK1, OPRL1, OPRM1, OR10A5, OR11A1, OR12D3, OR1C1, OR1F1, OR1Q1, OR2H1, OR5V1, OR5V1, OR12D3, OR7A5, OR7C1, OR8B8, OXTR, P2RY1, P2RY10, P2RY11, P2RY12, P2RY13, P2RY14, P2RY2, P2RY5, P2RY6, PPYR1, PTAFR, PTGDR, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, Rgr, RGR, RHO, RRH, SSTR1, SSTR2, SSTR3, SSTR4, SUCNR1, TBXA2R, TRHR 162 ADORA1(5), ADORA2A(3), ADORA2B(1), ADORA3(3), ADRA1A(5), ADRA1B(4), ADRA1D(2), ADRA2A(3), ADRB1(2), ADRB3(1), AGTR1(3), AGTR2(4), AVPR1A(3), AVPR1B(3), AVPR2(6), BDKRB2(2), BRS3(1), C3AR1(2), CCBP2(5), CCKAR(1), CCKBR(3), CCR1(5), CCR3(3), CCR5(1), CCR6(2), CCR7(1), CCR8(4), CCR9(4), CCRL1(2), CHML(4), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), CMKLR1(2), CNR1(3), CX3CR1(1), CXCR4(3), DRD1(1), DRD2(3), DRD3(3), DRD5(2), EDNRA(4), EDNRB(7), F2RL2(2), FPR1(2), FSHR(6), GALR1(1), GALT(2), GHSR(5), GPR17(1), GPR173(2), GPR174(2), GPR37(6), GPR37L1(3), GPR4(1), GPR50(5), GPR6(5), GPR63(2), GPR77(1), GPR83(1), GPR85(1), GPR87(4), GRPR(3), HCRTR1(1), HCRTR2(1), HRH1(1), HRH2(4), HTR1A(3), HTR1B(3), HTR1D(2), HTR1E(5), HTR1F(2), HTR2A(2), HTR2B(1), HTR2C(6), HTR4(2), HTR5A(2), HTR7(6), LHCGR(4), MAS1(1), MC3R(1), MC4R(3), MC5R(4), MLNR(3), MTNR1B(3), NMUR1(4), NMUR2(6), NPY1R(4), NPY2R(5), NPY5R(1), NTSR1(1), NTSR2(4), OPN1SW(3), OPN3(1), OPRD1(1), OPRK1(5), OPRM1(1), OR12D3(1), OR1C1(1), OR1F1(2), OR2H1(3), OR5V1(2), OR7A5(3), OR8B8(2), OXTR(2), P2RY1(3), P2RY10(6), P2RY12(3), P2RY13(2), P2RY14(4), P2RY2(2), PPYR1(1), PTAFR(1), PTGER2(1), PTGFR(6), PTGIR(1), RGR(2), RHO(2), RRH(2), SSTR1(4), SSTR2(2), SSTR4(2), TRHR(6) 27582563 350 94 351 123 144 85 5 90 26 0 0.0033 0.35 6 GABAPATHWAY Gamma-aminobutyric acid (GABA) is an inhibitory neurotransmitter whose receptor is regulated by Plic-1, gephyrin, and GABARAP, which promote receptor clustering. DNM1, GABARAP, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GPHN, NSF, SRC, UBQLN1 11 DNM1(8), GABRA1(2), GABRA2(6), GABRA3(4), GABRA4(6), GABRA6(4), GPHN(11), NSF(1), SRC(3), UBQLN1(2) 2609190 47 27 45 20 13 9 1 17 7 0 0.0034 0.35 7 1_AND_2_METHYLNAPHTHALENE_DEGRADATION ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1 7 ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6) 1307115 19 16 19 5 3 4 1 11 0 0 0.0053 0.35 8 HSA04012_ERBB_SIGNALING_PATHWAY Genes involved in ErbB signaling pathway ABL1, ABL2, AKT1, AKT2, AKT3, ARAF, AREG, BAD, BRAF, BTC, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CBL, CBLB, CBLC, CDKN1A, CDKN1B, CRK, CRKL, EGF, EGFR, EIF4EBP1, ELK1, ERBB2, ERBB3, ERBB4, EREG, FRAP1, GAB1, GRB2, GSK3B, HBEGF, HRAS, JUN, KRAS, MAP2K1, MAP2K2, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MYC, NCK1, NCK2, NRAS, NRG1, NRG2, NRG3, NRG4, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCG, PTK2, RAF1, RPS6KB1, RPS6KB2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SRC, STAT5A, STAT5B, TGFA 79 ABL1(4), ABL2(5), AKT1(2), AKT2(5), ARAF(3), BAD(1), BTC(2), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CBL(2), CBLB(6), CDKN1A(1), CDKN1B(1), CRKL(2), EGF(3), EGFR(10), ERBB2(6), ERBB3(11), EREG(1), GAB1(6), GRB2(2), GSK3B(7), HBEGF(1), MAP2K1(3), MAPK1(2), MAPK10(4), MAPK3(2), MAPK8(2), MAPK9(3), NRG1(9), NRG2(4), NRG3(3), NRG4(1), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLCG1(4), PLCG2(9), PRKCA(2), PRKCG(8), PTK2(5), RAF1(4), RPS6KB1(3), RPS6KB2(1), SHC1(3), SHC3(1), SHC4(5), SOS1(5), SOS2(9), SRC(3), STAT5B(2) 22279133 222 77 216 71 77 54 9 52 30 0 0.0055 0.35 9 HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION Genes involved in neuroactive ligand-receptor interaction ADCYAP1R1, ADORA1, ADORA2A, ADORA2B, ADORA3, ADRA1A, ADRA1B, ADRA2A, ADRA2B, ADRA2C, ADRB1, ADRB2, ADRB3, AGTR1, AGTR2, AGTRL1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BRS3, C3AR1, C5AR1, CALCR, CALCRL, CCKAR, CCKBR, CGA, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CNR1, CNR2, CRHR1, CRHR2, CTSG, CYSLTR1, CYSLTR2, DRD1, DRD2, DRD3, DRD4, DRD5, EDG1, EDG2, EDG3, EDG4, EDG5, EDG6, EDG7, EDG8, EDNRA, EDNRB, F2, F2R, F2RL1, F2RL2, F2RL3, FPR1, FPRL1, FPRL2, FSHB, FSHR, GABBR1, GABBR2, GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GABRB1, GABRB2, GABRB3, GABRD, GABRE, GABRG1, GABRG2, GABRG3, GABRP, GABRQ, GABRR1, GABRR2, GALR1, GALR2, GALR3, GCGR, GH1, GH2, GHR, GHRHR, GHSR, GIPR, GLP1R, GLP2R, GLRA1, GLRA2, GLRA3, GLRB, GNRHR, GPR156, GPR23, GPR35, GPR50, GPR63, GPR83, GRIA1, GRIA2, GRIA3, GRIA4, GRID1, GRID2, GRIK1, GRIK2, GRIK3, GRIK4, GRIK5, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, GRIN3A, GRIN3B, GRM1, GRM2, GRM3, GRM4, GRM5, GRM6, GRM7, GRM8, GRPR, GZMA, HCRTR1, HCRTR2, HRH1, HRH2, HRH3, HRH4, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, KISS1R, LEP, LEPR, LHB, LHCGR, LTB4R, LTB4R2, MAS1, MC1R, MC2R, MC3R, MC4R, MC5R, MCHR1, MCHR2, MLNR, MTNR1A, MTNR1B, NMBR, NMUR1, NMUR2, NPBWR1, NPBWR2, NPFFR1, NPFFR2, NPY1R, NPY2R, NPY5R, NR3C1, NTSR1, NTSR2, OPRD1, OPRK1, OPRL1, OPRM1, OXTR, P2RX1, P2RX2, P2RX3, P2RX4, P2RX5, P2RX7, P2RXL1, P2RY1, P2RY10, P2RY11, P2RY13, P2RY14, P2RY2, P2RY4, P2RY5, P2RY6, P2RY8, PARD3, PPYR1, PRL, PRLHR, PRLR, PRSS1, PRSS2, PRSS3, PTAFR, PTGDR, PTGER1, PTGER2, PTGER3, PTGER4, PTGFR, PTGIR, PTH2R, PTHR1, RXFP1, RXFP2, SCTR, SSTR1, SSTR2, SSTR3, SSTR4, SSTR5, TAAR1, TAAR2, TAAR5, TAAR6, TAAR8, TAAR9, TACR1, TACR2, TACR3, TBXA2R, THRA, THRB, TRHR, TRPV1, TSHB, TSHR, TSPO, UTS2R, VIPR1, VIPR2 232 ADCYAP1R1(1), ADORA1(5), ADORA2A(3), ADORA2B(1), ADORA3(3), ADRA1A(5), ADRA1B(4), ADRA2A(3), ADRB1(2), ADRB3(1), AGTR1(3), AGTR2(4), AVPR1A(3), AVPR1B(3), AVPR2(6), BDKRB2(2), BRS3(1), C3AR1(2), C5AR1(2), CALCR(3), CALCRL(5), CCKAR(1), CCKBR(3), CGA(1), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), CNR1(3), CRHR1(1), CRHR2(4), CTSG(2), CYSLTR1(3), CYSLTR2(3), DRD1(1), DRD2(3), DRD3(3), DRD5(2), EDNRA(4), EDNRB(7), F2(2), F2RL2(2), FPR1(2), FSHB(1), FSHR(6), GABBR1(4), GABBR2(3), GABRA1(2), GABRA2(6), GABRA3(4), GABRA4(6), GABRA6(4), GABRB1(6), GABRB2(4), GABRB3(5), GABRE(5), GABRG1(7), GABRG2(8), GABRG3(5), GABRP(2), GABRQ(7), GABRR1(2), GABRR2(3), GALR1(1), GH1(1), GH2(1), GHR(6), GHRHR(2), GHSR(5), GLP1R(2), GLP2R(3), GLRA1(2), GLRA2(2), GLRA3(7), GLRB(6), GNRHR(4), GPR156(6), GPR50(5), GPR63(2), GPR83(1), GRIA2(10), GRIA3(5), GRIA4(12), GRID2(10), GRIK1(5), GRIK2(10), GRIK4(11), GRIK5(5), GRIN1(1), GRIN2A(15), GRIN2B(8), GRIN2C(2), GRIN2D(3), GRIN3A(3), GRM1(9), GRM2(3), GRM3(5), GRM4(7), GRM5(8), GRM6(9), GRM7(8), GRM8(7), GRPR(3), GZMA(2), HCRTR1(1), HCRTR2(1), HRH1(1), HRH2(4), HRH4(2), HTR1A(3), HTR1B(3), HTR1D(2), HTR1E(5), HTR1F(2), HTR2A(2), HTR2B(1), HTR2C(6), HTR4(2), HTR5A(2), HTR7(6), LEP(1), LEPR(5), LHB(1), LHCGR(4), MAS1(1), MC2R(2), MC3R(1), MC4R(3), MC5R(4), MCHR1(6), MCHR2(2), MLNR(3), MTNR1B(3), NMUR1(4), NMUR2(6), NPBWR1(3), NPFFR2(3), NPY1R(4), NPY2R(5), NPY5R(1), NR3C1(3), NTSR1(1), NTSR2(4), OPRD1(1), OPRK1(5), OPRM1(1), OXTR(2), P2RX1(1), P2RX2(1), P2RX3(2), P2RX4(2), P2RX5(1), P2RX7(2), P2RY1(3), P2RY10(6), P2RY13(2), P2RY14(4), P2RY2(2), P2RY4(6), PARD3(5), PPYR1(1), PRL(2), PRLR(2), PRSS1(3), PRSS2(1), PRSS3(4), PTAFR(1), PTGER2(1), PTGER3(6), PTGFR(6), PTGIR(1), PTH2R(6), RXFP1(2), RXFP2(8), SCTR(3), SSTR1(4), SSTR2(2), SSTR4(2), TAAR1(3), TAAR2(2), TAAR5(5), TAAR6(2), TAAR8(1), TAAR9(1), TACR1(2), TACR2(1), TACR3(4), THRA(2), THRB(4), TRHR(6), TRPV1(3), TSHR(6), VIPR1(3), VIPR2(3) 49927640 694 117 691 262 266 153 15 202 58 0 0.0064 0.35 10 ERBB3PATHWAY Neuregulins bind to the receptor tyrosine kinases ErbB3 and ErbB4, surface-localized receptors whose overexpression induces tumor formation. EGF, EGFR, ERBB3, NRG1, UBE2D1 5 EGF(3), EGFR(10), ERBB3(11), NRG1(9), UBE2D1(1) 2391404 34 26 31 6 16 7 0 7 4 0 0.0074 0.35 11 MONOAMINE_GPCRS ADRA1A, ADRA1B, ADRA1D, ADRA2A, ADRA2C, ADRB1, ADRB2, ADRB3, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, DRD1, DRD2, DRD3, DRD4, DRD5, HRH1, HRH2, HTR1A, HTR1B, HTR1D, HTR1E, HTR1F, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, HTR7, LOC93164 32 ADRA1A(5), ADRA1B(4), ADRA1D(2), ADRA2A(3), ADRB1(2), ADRB3(1), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), DRD1(1), DRD2(3), DRD3(3), DRD5(2), HRH1(1), HRH2(4), HTR1A(3), HTR1B(3), HTR1D(2), HTR1E(5), HTR1F(2), HTR2A(2), HTR2B(1), HTR2C(6), HTR4(2), HTR5A(2), HTR7(6) 5918446 81 46 81 31 37 22 1 12 9 0 0.0076 0.35 12 FLUMAZENILPATHWAY Flumazenil is a benzodiazepine receptor antagonist that may induce protective preconditioning in ischemic cardiomyocytes. GABRA1, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, GPX1, PRKCE, SOD1 8 GABRA1(2), GABRA2(6), GABRA3(4), GABRA4(6), GABRA6(4), GPX1(1), PRKCE(4) 1647736 27 19 27 5 9 5 0 10 3 0 0.0078 0.35 13 CCR3PATHWAY CCR3 is a G-protein coupled receptor that recruits eosinophils to inflammation sites via chemokine ligands. ARHA, CCL11, CCR3, CFL1, GNAQ, GNAS, GNB1, GNGT1, HRAS, LIMK1, MAP2K1, MAPK1, MAPK3, MYL2, NOX1, PIK3C2G, PLCB1, PPP1R12B, PRKCA, PRKCB1, PTK2, RAF1, ROCK2 21 CCR3(3), CFL1(1), GNAQ(3), GNAS(6), GNB1(1), LIMK1(4), MAP2K1(3), MAPK1(2), MAPK3(2), MYL2(1), NOX1(1), PIK3C2G(7), PLCB1(8), PPP1R12B(5), PRKCA(2), PTK2(5), RAF1(4), ROCK2(2) 5967506 60 39 58 11 24 8 2 17 9 0 0.0083 0.35 14 PLCPATHWAY Phospholipase C hydrolyzes the membrane lipid PIP2 to DAG, which activates protein kinase C, and IP3, which causes calcium influx. AKT1, PIK3CA, PIK3R1, PLCB1, PLCG1, PRKCA, PRKCB1, VAV1 6 AKT1(2), PIK3R1(5), PLCB1(8), PLCG1(4), PRKCA(2), VAV1(11) 2499323 32 26 32 9 13 4 2 8 5 0 0.0093 0.35 15 HSA04916_MELANOGENESIS Genes involved in melanogenesis ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ASIP, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CREB1, CREB3, CREB3L1, CREB3L2, CREB3L3, CREB3L4, CREBBP, CTNNB1, DCT, DVL1, DVL2, DVL3, EDN1, EDNRB, EP300, FZD1, FZD10, FZD2, FZD3, FZD4, FZD5, FZD6, FZD7, FZD8, FZD9, GNAI1, GNAI2, GNAI3, GNAO1, GNAQ, GNAS, GSK3B, HRAS, KIT, KITLG, KRAS, LEF1, LOC652788, MAP2K1, MAP2K2, MAPK1, MAPK3, MC1R, MITF, NRAS, PLCB1, PLCB2, PLCB3, PLCB4, POMC, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, RAF1, TCF7, TCF7L1, TCF7L2, TYR, TYRP1, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B 96 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CREB1(1), CREB3(2), CREB3L1(3), CREB3L2(3), CREB3L3(1), CREB3L4(1), CREBBP(21), CTNNB1(8), DCT(9), DVL2(8), DVL3(2), EDN1(1), EDNRB(7), EP300(13), FZD10(4), FZD2(2), FZD3(10), FZD4(1), FZD6(3), FZD7(3), FZD8(1), GNAI1(3), GNAO1(5), GNAQ(3), GNAS(6), GSK3B(7), KIT(6), KITLG(2), LEF1(4), MAP2K1(3), MAPK1(2), MAPK3(2), MITF(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), POMC(2), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKX(2), RAF1(4), TCF7(3), TCF7L1(3), TYR(2), TYRP1(2), WNT1(1), WNT10B(3), WNT11(3), WNT16(2), WNT2B(1), WNT3(4), WNT3A(1), WNT4(1), WNT5A(3), WNT7A(2), WNT7B(2), WNT8A(1), WNT9A(2), WNT9B(1) 24910206 290 83 287 106 123 67 6 65 29 0 0.0096 0.35 16 ERKPATHWAY Cell growth is promoted by Ras activation of the anti-apoptotic p44/42 MAP kinase pathway. DPM2, EGFR, ELK1, GNAS, GNB1, GNGT1, GRB2, HRAS, IGF1R, ITGB1, KLK2, MAP2K1, MAP2K2, MAPK1, MAPK3, MKNK1, MKNK2, MYC, NGFB, NGFR, PDGFRA, PPP2CA, PTPRR, RAF1, RPS6KA1, RPS6KA5, SHC1, SOS1, SRC, STAT3 28 EGFR(10), GNAS(6), GNB1(1), GRB2(2), IGF1R(7), ITGB1(6), MAP2K1(3), MAPK1(2), MAPK3(2), MKNK1(1), MKNK2(2), NGFR(2), PDGFRA(13), PPP2CA(1), PTPRR(1), RAF1(4), RPS6KA1(1), RPS6KA5(3), SHC1(3), SOS1(5), SRC(3), STAT3(2) 7636618 80 47 78 30 30 16 6 20 7 1 0.0097 0.35 17 CREMPATHWAY The transcription factor CREM activates a post-meiotic transcriptional cascade culminating in spermatogenesis. ADCY1, CREM, FHL5, FSHB, FSHR, GNAS, XPO1 7 ADCY1(4), CREM(4), FHL5(1), FSHB(1), FSHR(6), GNAS(6), XPO1(1) 2196244 23 20 23 8 9 5 2 5 2 0 0.0099 0.35 18 GSK3PATHWAY Bacterial lipopolysaccharide activates AKT to promote the survival and activation of macrophages and inhibits Gsk3-beta to promote beta-catenin accumulation in the nucleus. AKT1, APC, AXIN1, CCND1, CD14, CTNNB1, DVL1, FZD1, GJA1, GNAI1, GSK3B, IRAK1, LBP, LEF1, LY96, MYD88, NFKB1, PDPK1, PIK3CA, PIK3R1, PPP2CA, PRKR, RELA, TIRAP, TLR4, TOLLIP, WNT1 24 AKT1(2), AXIN1(1), CD14(1), CTNNB1(8), GJA1(3), GNAI1(3), GSK3B(7), IRAK1(1), LBP(1), LEF1(4), LY96(2), MYD88(1), NFKB1(3), PDPK1(1), PIK3R1(5), PPP2CA(1), RELA(2), TIRAP(1), TLR4(7), TOLLIP(1), WNT1(1) 5168970 56 36 56 19 22 11 2 10 11 0 0.011 0.35 19 HSA04540_GAP_JUNCTION Genes involved in gap junction ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADRB1, CDC2, CSNK1D, DRD1, DRD2, EDG2, EGF, EGFR, GJA1, GJD2, GNA11, GNAI1, GNAI2, GNAI3, GNAQ, GNAS, GRB2, GRM1, GRM5, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, HRAS, HTR2A, HTR2B, HTR2C, ITPR1, ITPR2, ITPR3, KRAS, LOC643224, LOC654264, MAP2K1, MAP2K2, MAP2K5, MAP3K2, MAPK1, MAPK3, MAPK7, NPR1, NPR2, NRAS, PDGFA, PDGFB, PDGFC, PDGFD, PDGFRA, PDGFRB, PLCB1, PLCB2, PLCB3, PLCB4, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKG1, PRKG2, PRKX, PRKY, RAF1, SOS1, SOS2, SRC, TJP1, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8 89 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), ADRB1(2), CSNK1D(3), DRD1(1), DRD2(3), EGF(3), EGFR(10), GJA1(3), GNA11(1), GNAI1(3), GNAQ(3), GNAS(6), GRB2(2), GRM1(9), GRM5(8), GUCY1A2(8), GUCY1B3(7), GUCY2C(7), GUCY2D(4), GUCY2F(7), HTR2A(2), HTR2B(1), HTR2C(6), ITPR1(11), ITPR2(12), ITPR3(11), MAP2K1(3), MAP2K5(2), MAP3K2(2), MAPK1(2), MAPK3(2), MAPK7(3), NPR1(6), NPR2(9), PDGFA(1), PDGFC(2), PDGFD(3), PDGFRA(13), PDGFRB(5), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKG1(4), PRKG2(3), PRKX(2), RAF1(4), SOS1(5), SOS2(9), SRC(3), TJP1(5), TUBA3C(9), TUBA3D(2), TUBA3E(4), TUBA4A(1), TUBA8(1), TUBAL3(3), TUBB(1), TUBB1(2), TUBB2A(1), TUBB2B(3), TUBB3(1), TUBB4(2), TUBB4Q(2), TUBB6(3), TUBB8(2) 30479749 347 92 345 135 149 69 11 91 26 1 0.011 0.35 20 ACE2PATHWAY Angiotensin-converting enzyme 2 (ACE2) digests the blood-pressure regulator angiotensin II (AGT) ultimately to the vasodilator AGT1-7. ACE2, AGT, AGTR1, AGTR2, CMA1, COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, REN 12 ACE2(6), AGT(4), AGTR1(3), AGTR2(4), COL4A1(12), COL4A2(3), COL4A3(3), COL4A4(8), COL4A5(17), COL4A6(15), REN(3) 6047985 78 38 77 14 17 23 2 22 14 0 0.011 0.35 21 HSA00902_MONOTERPENOID_BIOSYNTHESIS Genes involved in monoterpenoid biosynthesis CYP2C19, CYP2C9 2 CYP2C19(4), CYP2C9(4) 467790 8 8 8 2 2 1 0 4 1 0 0.013 0.36 22 TGFBPATHWAY The TGF-beta receptor responds to ligand binding by activating the SMAD family of transcriptional regulations, commonly blocking cell growth. APC, CDH1, CREBBP, EP300, MADH2, MADH3, MADH4, MADH7, MADHIP, MAP2K1, MAP3K7, MAP3K7IP1, MAPK3, SKIL, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2 11 CDH1(4), CREBBP(21), EP300(13), MAP2K1(3), MAP3K7(2), MAPK3(2), TGFB1(1), TGFB2(5), TGFBR1(6) 4398079 57 33 56 15 22 18 2 7 8 0 0.014 0.36 23 TUBBYPATHWAY Tubby is activated by phospholipase C activity and hydrolysis of PIP2, after which it enters the nucleus and regulates transcription. CHRM1, GNAQ, GNB1, GNGT1, HTR2C, PLCB1, TUB 7 CHRM1(3), GNAQ(3), GNB1(1), HTR2C(6), PLCB1(8), TUB(4) 1663568 25 18 25 7 13 3 1 5 3 0 0.014 0.36 24 AKAPCENTROSOMEPATHWAY Protein Kinase A at the Centrosome AKAP9, ARHA, CDC2, MAP2, PCNT1, PCNT2, PPP1CA, PPP2CA, PRKACB, PRKACG, PRKAG1, PRKAR2A, PRKAR2B, PRKCE, PRKCL1 10 AKAP9(20), MAP2(21), PPP2CA(1), PRKACB(1), PRKACG(2), PRKAG1(1), PRKAR2B(2), PRKCE(4) 4257455 52 31 52 13 16 11 1 14 10 0 0.014 0.36 25 ASBCELLPATHWAY B cells require interaction with helper T cells to produce antigen-specific immunoglobulins as a key element of the human immune response. CD28, CD4, CD80, HLA-DRA, HLA-DRB1, IL10, IL2, IL4, TNFRSF5, TNFRSF6, TNFSF5, TNFSF6 8 CD28(1), CD4(2), HLA-DRA(4), HLA-DRB1(1), IL10(1), IL2(3), IL4(3) 891147 15 12 15 8 6 4 0 3 0 2 0.015 0.36 26 SLRPPATHWAY Small leucine-rich proteoglycans (SLRPs) interact with and reorganize collagen fibers in the extracellular matrix. BGN, DCN, DSPG3, FMOD, KERA, LUM 5 DCN(3), FMOD(2), KERA(5), LUM(5) 844594 15 13 15 3 4 6 0 3 2 0 0.016 0.37 27 GAMMA_HEXACHLOROCYCLOHEXANE_DEGRADATION ACP1, ACP2, ACP5, ACPP, ACPT, ALPI, ALPL, ALPP, ALPP, ALPPL2, ALPPL2, CYP19A1, CYP1A1, CYP1A2, CYP2A6, CYP2A6, CYP2A7, CYP2A7P1, CYP2A13, CYP2B6, CYP2C18, CYP2C19, CYP2C19, CYP2C9, CYP2C8, CYP2C9, CYP2D6, CYP2E1, CYP2F1, CYP2J2, CYP3A4, CYP3A5, CYP3A7, CYP4B1, CYP4F8, CYP51A1, PON1 31 ACP1(2), ACP2(2), ACP5(1), ACPP(3), ALPI(2), ALPL(1), ALPP(1), CYP19A1(5), CYP1A1(6), CYP1A2(2), CYP2A13(6), CYP2A6(3), CYP2A7(5), CYP2C19(4), CYP2C8(2), CYP2C9(4), CYP2E1(5), CYP2F1(3), CYP2J2(3), CYP3A4(1), CYP3A5(3), CYP3A7(4), CYP4B1(8), CYP4F8(4), CYP51A1(3), PON1(5) 6841172 88 43 87 18 32 18 4 24 9 1 0.017 0.39 28 IGF1RPATHWAY Insulin-like growth factor receptor IGF-1R promotes cell growth and inhibits apoptosis on binding of ligands IGF-1 and 2 via Ras activation and the AKT pathway. AKT1, BAD, GRB2, HRAS, IGF1R, IRS1, MAP2K1, MAPK1, MAPK3, PIK3CA, PIK3R1, RAF1, SHC1, SOS1, YWHAH 14 AKT1(2), BAD(1), GRB2(2), IGF1R(7), IRS1(5), MAP2K1(3), MAPK1(2), MAPK3(2), PIK3R1(5), RAF1(4), SHC1(3), SOS1(5) 3851208 41 31 39 8 13 8 4 10 6 0 0.019 0.41 29 ALTERNATIVEPATHWAY The alternative complement pathway is an antibody-independent mechanism of immune activation that results in cell lysis via the membrane attack complex. BF, C3, C5, C6, C7, C8A, C9, DF, PFC 6 C3(10), C5(9), C6(10), C7(2), C8A(3), C9(4) 2997006 38 23 38 11 12 9 0 12 4 1 0.020 0.42 30 PEPTIDE_GPCRS AGTR1, AGTR2, ATP8A1, AVPR1A, AVPR1B, AVPR2, BDKRB1, BDKRB2, BLR1, BRS3, C3AR1, C5R1, CCKAR, CCKBR, CCR1, CCR10, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CX3CR1, CXCR3, CXCR4, CXCR6, EDNRA, EDNRB, ELA3A, FPR1, FPRL1, FPRL2, FSHR, FY, GALR1, GALR2, GALR3, GALT, GHSR, GNB2L1, GNRHR, GPR77, GRPR, IL8RA, IL8RB, LHCGR, MC1R, MC2R, MC3R, MC4R, MC5R, NMBR, NPY1R, NPY2R, NPY5R, NPY6R, NTSR1, NTSR2, OPRD1, OPRK1, OPRL1, OPRM1, OXTR, PPYR1, SSTR1, SSTR2, SSTR3, SSTR4, TAC4, TACR1, TACR2, TACR3, TRHR, TSHR 66 AGTR1(3), AGTR2(4), ATP8A1(5), AVPR1A(3), AVPR1B(3), AVPR2(6), BDKRB2(2), BRS3(1), C3AR1(2), CCKAR(1), CCKBR(3), CCR1(5), CCR3(3), CCR5(1), CCR6(2), CCR7(1), CCR8(4), CX3CR1(1), CXCR4(3), EDNRA(4), EDNRB(7), FPR1(2), FSHR(6), GALR1(1), GALT(2), GHSR(5), GNRHR(4), GPR77(1), GRPR(3), LHCGR(4), MC2R(2), MC3R(1), MC4R(3), MC5R(4), NPY1R(4), NPY2R(5), NPY5R(1), NTSR1(1), NTSR2(4), OPRD1(1), OPRK1(5), OPRM1(1), OXTR(2), PPYR1(1), SSTR1(4), SSTR2(2), SSTR4(2), TAC4(1), TACR1(2), TACR2(1), TACR3(4), TRHR(6), TSHR(6) 11839511 155 61 156 61 58 36 3 50 8 0 0.023 0.47 31 HSA00830_RETINOL_METABOLISM Genes involved in retinol metabolism ALDH1A1, ALDH1A2, BCMO1, RDH5 4 ALDH1A1(3), ALDH1A2(6), BCMO1(4), RDH5(1) 902227 14 12 14 1 6 2 1 4 1 0 0.026 0.51 32 FIBRINOLYSISPATHWAY Thrombin cleavage of fibrinogen results in rapid formation of fibrin threads that form a mesh to capture platelets and other blood cells into a clot. CPB2, F13A1, F2, F2R, FGA, FGB, FGG, PLAT, PLAU, PLG, SERPINB2, SERPINE1 12 CPB2(1), F13A1(8), F2(2), FGA(11), FGB(1), FGG(4), PLAT(4), PLAU(2), PLG(7), SERPINB2(4), SERPINE1(1) 3124614 45 28 45 13 12 16 1 11 5 0 0.027 0.52 33 ST_WNT_BETA_CATENIN_PATHWAY Beta-catenin is degraded in the absence of Wnt signaling; when extracellular Wnt binds Frizzled receptors, beta-catenin accumulates in the nucleus and may promote cell survival. AKT1, AKT2, AKT3, ANKRD6, APC, AXIN1, AXIN2, C22orf2, CER1, CSNK1A1, CTNNB1, DACT1, DKK1, DKK2, DKK3, DKK4, DVL1, FRAT1, FSTL1, GSK3A, GSK3B, IDAX, LAMR1, LRP1, MVP, NKD1, NKD2, PIN1, PSEN1, PTPRA, SENP2, SFRP1, TSHB, WIF1 28 AKT1(2), AKT2(5), ANKRD6(5), AXIN1(1), AXIN2(7), CER1(3), CSNK1A1(2), CTNNB1(8), DACT1(5), DKK1(3), DKK3(2), DKK4(4), FSTL1(5), GSK3A(2), GSK3B(7), LRP1(14), MVP(4), NKD1(3), NKD2(1), PIN1(1), PSEN1(3), PTPRA(2), SENP2(2), SFRP1(2), WIF1(2) 7966525 95 48 94 28 42 16 3 21 13 0 0.028 0.52 34 BBCELLPATHWAY Fas ligand expression by T cells induces apoptosis in Fas-expressing, inactive B cells. CD28, CD4, HLA-DRA, HLA-DRB1, TNFRSF5, TNFRSF6, TNFSF5, TNFSF6 4 CD28(1), CD4(2), HLA-DRA(4), HLA-DRB1(1) 519147 8 8 8 4 2 3 0 1 0 2 0.029 0.53 35 GPCRDB_CLASS_C_METABOTROPIC_GLUTAMATE_PHEROMONE CASR, GABBR1, GPCR5A, GPR51, GPRC5A, GPRC5B, GPRC5C, GPRC5D, GRM1, GRM2, GRM3, GRM4, GRM5, GRM7, GRM8 13 CASR(5), GABBR1(4), GPRC5A(2), GPRC5B(1), GPRC5C(1), GPRC5D(1), GRM1(9), GRM2(3), GRM3(5), GRM4(7), GRM5(8), GRM7(8), GRM8(7) 4720076 61 37 59 36 29 11 1 14 6 0 0.031 0.54 36 WNTPATHWAY The Wnt glycoprotein binds to membrane-bound receptors such as Frizzled to activate a number of signaling pathways, including that of beta-catenin. APC, AXIN1, BTRC, CCND1, CREBBP, CSNK1A1, CSNK1D, CSNK2A1, CTBP1, CTNNB1, DVL1, FRAT1, FZD1, GSK3B, HDAC1, MADH4, MAP3K7, MAP3K7IP1, MYC, NLK, PPARD, PPP2CA, TCF1, TLE1, WIF1, WNT1 21 AXIN1(1), BTRC(2), CREBBP(21), CSNK1A1(2), CSNK1D(3), CSNK2A1(4), CTBP1(1), CTNNB1(8), GSK3B(7), HDAC1(2), MAP3K7(2), NLK(1), PPARD(1), PPP2CA(1), TLE1(1), WIF1(2), WNT1(1) 5442475 60 38 60 18 21 15 1 13 10 0 0.032 0.54 37 NUCLEAR_RECEPTORS ALK, AR, ESR1, ESR2, ESRRA, HNF4A, NPM1, NR0B1, NR1D2, NR1H2, NR1H3, NR1I2, NR1I3, NR2C2, NR2E1, NR2F1, NR2F2, NR2F6, NR3C1, NR4A1, NR4A2, NR5A1, NR5A2, PGR, PPARA, PPARD, PPARG, RARA, RARB, RARG, ROR1, RORA, RORC, RXRA, RXRB, RXRG, THRA, THRA, NR1D1, THRB, VDR 40 ALK(10), AR(4), ESR1(12), ESR2(2), ESRRA(2), HNF4A(2), NR0B1(2), NR1D1(4), NR1D2(3), NR1H3(4), NR1I2(2), NR1I3(2), NR2C2(4), NR2E1(1), NR2F1(2), NR2F2(5), NR3C1(3), NR4A1(2), NR4A2(5), NR5A2(4), PGR(4), PPARA(1), PPARD(1), PPARG(1), RARB(7), RARG(5), ROR1(5), RORA(2), RORC(1), RXRA(1), RXRB(2), RXRG(3), THRA(2), THRB(4), VDR(1) 9746673 115 54 115 46 45 25 2 32 11 0 0.032 0.54 38 REELINPATHWAY Reelin is secreted by neurons and recognized by receptors including cadherin related neuronal receptors, which promote phosphorylation of Dab1. CDK5, CDK5R1, DAB1, FYN, LRP8, RELN, VLDLR 7 CDK5R1(1), DAB1(4), FYN(4), LRP8(1), RELN(24), VLDLR(3) 3247718 37 25 36 14 10 8 3 11 5 0 0.035 0.54 39 HSA00430_TAURINE_AND_HYPOTAURINE_METABOLISM Genes involved in taurine and hypotaurine metabolism BAAT, CDO1, CSAD, GAD1, GAD2, GGT1, GGTL3, GGTL4 5 BAAT(2), CDO1(1), CSAD(1), GAD1(7), GAD2(4) 1102341 15 13 15 3 7 3 1 4 0 0 0.035 0.54 40 IL5PATHWAY Pro-inflammatory IL-5 is secretes by activated T cells, eosinophils, and mast cells, and stimulates the proliferation and activation of eosinophils in bone marrow. CCL11, CCR3, CD4, HLA-DRA, HLA-DRB1, IL1B, IL4, IL5, IL5RA, IL6 10 CCR3(3), CD4(2), HLA-DRA(4), HLA-DRB1(1), IL4(3), IL5RA(4), IL6(1) 1205797 18 13 18 5 7 3 0 6 0 2 0.036 0.54 41 ALKPATHWAY Activin receptor-like kinase 3 (ALK3) is required during gestation for cardiac muscle development. ACVR1, APC, ATF2, AXIN1, BMP10, BMP2, BMP4, BMP5, BMP7, BMPR1A, BMPR2, CHRD, CTNNB1, DVL1, FZD1, GATA4, GSK3B, MADH1, MADH4, MADH5, MADH6, MAP3K7, MEF2C, MYL2, NKX2-5, NOG, NPPA, NPPB, RFC1, TCF1, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TGFBR3, WNT1 30 ACVR1(3), AXIN1(1), BMP10(2), BMP4(1), BMP5(4), BMP7(5), BMPR1A(4), BMPR2(7), CHRD(5), CTNNB1(8), GATA4(1), GSK3B(7), MAP3K7(2), MEF2C(7), MYL2(1), NKX2-5(1), NPPA(1), RFC1(10), TGFB1(1), TGFB2(5), TGFBR1(6), TGFBR3(5), WNT1(1) 6761525 88 41 87 25 30 15 0 26 17 0 0.036 0.54 42 SA_BONE_MORPHOGENETIC Bone morphogenetic protein binds to its receptor to induce ectopic bone formation and promote development of the viscera. BMP1, BMPR1A, BMPR1B, BMPR2, MADH1, MADH4, MADH6 4 BMP1(4), BMPR1A(4), BMPR1B(9), BMPR2(7) 1450885 24 16 24 4 5 7 0 5 7 0 0.036 0.54 43 ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS Rat-derived PC12 cells respond to nerve growth factor (NGF) and PACAP to differentiate into neuronal cells. AKT1, ASAH1, ATF1, BRAF, CAMP, CREB1, CREB3, CREB5, CREBBP, CRKL, DAG1, EGR1, EGR2, EGR3, EGR4, ELK1, FRS2, GAS, GNAQ, GRF2, JUN, MAP1B, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK3, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, NTRK1, OPN1LW, PACAP, PIK3C2G, PIK3CA, PIK3CD, PIK3R1, PTPN11, RPS6KA3, SH2B, SHC1, SRC, TERF2IP, TH, TUBA3 39 AKT1(2), ASAH1(3), ATF1(1), CREB1(1), CREB3(2), CREB5(2), CREBBP(21), CRKL(2), DAG1(4), EGR1(2), EGR2(6), EGR3(2), FRS2(2), GNAQ(3), MAP1B(18), MAPK1(2), MAPK10(4), MAPK3(2), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3), NTRK1(6), PIK3C2G(7), PIK3CD(2), PIK3R1(5), PTPN11(2), RPS6KA3(3), SHC1(3), SRC(3), TERF2IP(1) 11046519 119 55 117 41 31 35 3 27 22 1 0.040 0.57 44 ACETYLCHOLINE_SYNTHESIS ACHE, CHAT, CHKA, PCYT1A, PDHA1, PDHA2, PEMT, SLC18A3 8 CHAT(6), CHKA(2), PCYT1A(4), PDHA1(4), PDHA2(6), PEMT(1), SLC18A3(6) 1652863 29 20 29 13 11 10 0 6 2 0 0.042 0.59 45 HSA00641_3_CHLOROACRYLIC_ACID_DEGRADATION Genes involved in 3-chloroacrylic acid degradation ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1 15 ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1) 3121989 40 26 40 10 12 11 1 16 0 0 0.046 0.62 46 COMPLEMENT_ACTIVATION_CLASSICAL C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C8B, C9, DAF, MASP1 12 C1QB(1), C1R(2), C1S(3), C3(10), C5(9), C6(10), C7(2), C8A(3), C9(4), MASP1(9) 4608606 53 29 53 21 17 10 1 16 8 1 0.046 0.62 47 INTRINSICPATHWAY The intrinsic prothrombin activation pathway is activated by traumatized blood vessels and induces clot formation. COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, F10, F11, F12, F2, F2R, F5, F8, F9, FGA, FGB, FGG, KLKB1, KNG, PROC, PROS1, SERPINC1, SERPING1 22 COL4A1(12), COL4A2(3), COL4A3(3), COL4A4(8), COL4A5(17), COL4A6(15), F10(1), F11(4), F12(2), F2(2), F5(14), F8(15), F9(6), FGA(11), FGB(1), FGG(4), KLKB1(4), PROC(1), PROS1(3), SERPINC1(3), SERPING1(3) 10476452 132 48 129 31 26 35 3 45 23 0 0.048 0.62 48 ST_ADRENERGIC Adrenergic receptors respond to epinephrine and norepinephrine signaling. AKT1, APC, AR, ASAH1, BF, BRAF, CAMP, CCL13, CCL15, CCL16, DAG1, EGFR, GAS, GNA11, GNA15, GNAI1, GNAQ, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, MAPK10, MAPK14, PHKA2, PIK3CA, PIK3CD, PIK3R1, PITX2, PTX1, PTX3, RAF1, SRC 31 AKT1(2), AR(4), ASAH1(3), CCL13(1), CCL15(1), DAG1(4), EGFR(10), GNA11(1), GNA15(3), GNAI1(3), GNAQ(3), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), KCNJ3(6), KCNJ5(3), KCNJ9(2), MAPK1(2), MAPK10(4), MAPK14(3), PHKA2(5), PIK3CD(2), PIK3R1(5), PITX2(2), PTX3(2), RAF1(4), SRC(3) 10430839 116 53 115 49 49 17 6 34 10 0 0.050 0.63 49 COMPPATHWAY Both the classic and alternative immune complement pathways promote inflammation, foreign cell lysis, and phagocytosis. BF, C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C9, DF, MASP1, MASP2, MBL2 14 C1QB(1), C1R(2), C1S(3), C3(10), C5(9), C6(10), C7(2), C8A(3), C9(4), MASP1(9), MASP2(4) 5027383 57 31 57 22 17 11 2 18 8 1 0.051 0.63 50 HSA04614_RENIN_ANGIOTENSIN_SYSTEM Genes involved in renin-angiotensin system ACE, ACE2, AGT, AGTR1, AGTR2, ANPEP, CMA1, CPA3, CTSA, CTSG, ENPEP, LNPEP, MAS1, MME, NLN, REN, THOP1 17 ACE(2), ACE2(6), AGT(4), AGTR1(3), AGTR2(4), ANPEP(5), CPA3(2), CTSA(3), CTSG(2), ENPEP(7), LNPEP(6), MAS1(1), MME(6), NLN(1), REN(3) 4927062 55 35 55 10 14 17 2 14 8 0 0.051 0.63 51 HSA00534_HEPARAN_SULFATE_BIOSYNTHESIS Genes involved in heparan sulfate biosynthesis EXT1, EXT2, EXTL1, EXTL2, EXTL3, GLCE, HS2ST1, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, HS3ST5, HS6ST1, HS6ST2, HS6ST3, LOC728969, NDST1, NDST2, NDST3, NDST4 19 EXT1(10), EXTL1(3), EXTL2(3), EXTL3(7), GLCE(3), HS2ST1(3), HS3ST1(1), HS3ST2(1), HS3ST3B1(2), HS3ST5(4), HS6ST2(2), HS6ST3(2), NDST1(3), NDST2(5), NDST3(7), NDST4(4) 4886480 60 36 60 16 26 15 2 13 4 0 0.054 0.63 52 HSA00980_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 Genes involved in metabolism of xenobiotics by cytochrome P450 ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1C1, AKR1C2, AKR1C3, AKR1C4, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, CYP1A1, CYP1A2, CYP1B1, CYP2B6, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2F1, CYP2S1, CYP3A4, CYP3A43, CYP3A5, CYP3A7, DHDH, EPHX1, GSTA1, GSTA2, GSTA3, GSTA4, GSTA5, GSTK1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, MGST1, MGST2, MGST3, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7 68 ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), AKR1C2(3), AKR1C4(2), ALDH1A3(4), ALDH3A1(2), ALDH3B1(2), ALDH3B2(1), CYP1A1(6), CYP1A2(2), CYP1B1(2), CYP2C19(4), CYP2C8(2), CYP2C9(4), CYP2E1(5), CYP2F1(3), CYP2S1(3), CYP3A4(1), CYP3A5(3), CYP3A7(4), DHDH(1), EPHX1(5), GSTA1(1), GSTA3(3), GSTA5(1), GSTM2(2), GSTM3(2), GSTM4(2), GSTM5(1), GSTZ1(2), MGST1(2), MGST3(1), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2A1(8), UGT2A3(5), UGT2B10(1), UGT2B11(4), UGT2B15(2), UGT2B17(4), UGT2B28(2), UGT2B4(2), UGT2B7(4) 12874907 143 52 142 33 39 30 4 52 17 1 0.054 0.63 53 BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES ABO, B3GNT1, FUT1, FUT2, FUT9, GCNT2, ST8SIA1 7 ABO(2), B3GNT1(2), FUT1(1), FUT2(1), FUT9(4), GCNT2(9), ST8SIA1(3) 1423002 22 15 22 4 6 6 1 6 3 0 0.054 0.63 54 TRKAPATHWAY Nerve growth factor (NGF) promotes neuronal survival and proliferation by binding its receptor TrkA, which activates PI3K/AKT, Ras, and the MAP kinase pathway. AKT1, DPM2, GRB2, HRAS, KLK2, NGFB, NTRK1, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, SHC1, SOS1 10 AKT1(2), GRB2(2), NTRK1(6), PIK3R1(5), PLCG1(4), PRKCA(2), SHC1(3), SOS1(5) 3005037 29 24 28 8 5 6 3 9 6 0 0.056 0.63 55 NKCELLSPATHWAY Natural killer (NK) lymphocytes are inhibited by MHC and activated by surface glycoproteins on tumor or virus-infected cells, which undergo perforin-mediated lysis. B2M, HLA-A, IL18, ITGB1, KLRC1, KLRC2, KLRC3, KLRC4, KLRD1, LAT, MAP2K1, MAPK3, PAK1, PIK3CA, PIK3R1, PTK2B, PTPN6, RAC1, SYK, VAV1 19 B2M(3), HLA-A(1), ITGB1(6), KLRC3(2), KLRC4(1), KLRD1(1), MAP2K1(3), MAPK3(2), PAK1(4), PIK3R1(5), PTK2B(1), PTPN6(4), VAV1(11) 3852523 44 28 44 11 15 7 3 10 9 0 0.059 0.63 56 HSA04514_CELL_ADHESION_MOLECULES Genes involved in cell adhesion molecules (CAMs) ALCAM, CADM1, CADM3, CD2, CD22, CD226, CD274, CD276, CD28, CD34, CD4, CD40, CD40LG, CD58, CD6, CD80, CD86, CD8A, CD8B, CD99, CDH1, CDH15, CDH2, CDH3, CDH4, CDH5, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CNTN1, CNTN2, CNTNAP1, CNTNAP2, CTLA4, ESAM, F11R, GLG1, HLA-A, HLA-A29.1, HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-E, HLA-F, HLA-G, ICAM1, ICAM2, ICAM3, ICOS, ICOSLG, ITGA4, ITGA6, ITGA8, ITGA9, ITGAL, ITGAM, ITGAV, ITGB1, ITGB2, ITGB7, ITGB8, JAM2, JAM3, L1CAM, MADCAM1, MAG, MPZ, MPZL1, NCAM1, NCAM2, NEGR1, NEO1, NFASC, NLGN1, NLGN2, NLGN3, NRCAM, NRXN1, NRXN2, NRXN3, OCLN, PDCD1, PDCD1LG2, PECAM1, PTPRC, PTPRF, PTPRM, PVR, PVRL1, PVRL2, PVRL3, SDC1, SDC2, SDC3, SDC4, SELE, SELL, SELP, SELPLG, SIGLEC1, SPN, VCAM1, VCAN 126 ALCAM(2), CADM3(6), CD2(3), CD22(8), CD226(2), CD274(3), CD28(1), CD34(1), CD4(2), CD40LG(6), CD58(1), CD6(3), CD8B(2), CDH1(4), CDH2(16), CDH3(2), CDH4(7), CDH5(2), CLDN10(2), CLDN11(1), CLDN15(1), CLDN16(4), CLDN17(5), CLDN18(2), CLDN19(1), CLDN6(2), CLDN7(2), CLDN8(3), CLDN9(1), CNTN1(12), CNTN2(5), CNTNAP1(6), CNTNAP2(8), CTLA4(1), ESAM(3), F11R(1), GLG1(4), HLA-A(1), HLA-B(3), HLA-C(2), HLA-DMA(2), HLA-DOB(1), HLA-DPA1(1), HLA-DPB1(1), HLA-DQA1(1), HLA-DQA2(1), HLA-DRA(4), HLA-DRB1(1), HLA-E(1), HLA-F(1), HLA-G(1), ICAM1(2), ICAM2(1), ICOS(1), ITGA4(3), ITGA6(3), ITGA8(5), ITGA9(4), ITGAL(5), ITGAM(5), ITGAV(1), ITGB1(6), ITGB2(4), ITGB7(4), ITGB8(4), JAM3(3), L1CAM(2), MAG(5), MPZL1(1), NCAM1(2), NCAM2(9), NEGR1(4), NEO1(4), NFASC(13), NLGN1(4), NLGN2(1), NLGN3(4), NRCAM(6), NRXN2(5), OCLN(1), PDCD1LG2(1), PECAM1(1), PTPRC(9), PTPRF(8), PTPRM(19), PVR(1), PVRL1(4), PVRL2(3), PVRL3(1), SDC2(2), SDC3(2), SDC4(1), SELE(2), SELP(4), SELPLG(1), SIGLEC1(2), SPN(1), VCAM1(7), VCAN(23) 32912658 360 86 354 139 115 81 5 111 44 4 0.060 0.63 57 CELL2CELLPATHWAY Epithelial cell adhesion proteins such as cadherins transduce signals into the cell via catenins, which alter cell shape and motility. ACTN1, ACTN2, ACTN3, BCAR1, CSK, CTNNA1, CTNNA2, CTNNB1, PECAM1, PTK2, PXN, SRC, VCL 13 ACTN1(3), ACTN2(7), ACTN3(2), CSK(1), CTNNA1(10), CTNNA2(10), CTNNB1(8), PECAM1(1), PTK2(5), SRC(3), VCL(1) 4757447 51 33 51 20 26 11 0 8 6 0 0.061 0.63 58 AMIPATHWAY Endogenous anti-thrombosis pathways are overwhelmed in plaque-narrowed blood vessels, resulting in potentially lethal myocardial infarction. ADCY1, CD3D, CD3E, CD3G, CD3Z, CD4, CREBBP, CSK, GNAS, GNB1, GNGT1, HLA-DRA, HLA-DRB1, LCK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTPRC, TRA@, TRB@, ZAP70 21 ADCY1(4), CD3D(1), CD3G(2), CD4(2), CREBBP(21), CSK(1), GNAS(6), GNB1(1), HLA-DRA(4), HLA-DRB1(1), LCK(2), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PTPRC(9), ZAP70(4) 5281836 65 34 65 20 21 20 5 8 9 2 0.061 0.63 59 CSKPATHWAY Csk inhibits T-cell activation by phosphorylating Lck; Csk is regulated by cAMP-dependent kinases and is opposed by the T-cell activator CD45. ADCY1, CD3D, CD3E, CD3G, CD3Z, CD4, CREBBP, CSK, GNAS, GNB1, GNGT1, HLA-DRA, HLA-DRB1, LCK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTPRC, TRA@, TRB@, ZAP70 21 ADCY1(4), CD3D(1), CD3G(2), CD4(2), CREBBP(21), CSK(1), GNAS(6), GNB1(1), HLA-DRA(4), HLA-DRB1(1), LCK(2), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PTPRC(9), ZAP70(4) 5281836 65 34 65 20 21 20 5 8 9 2 0.061 0.63 60 REDUCTIVE_CARBOXYLATE_CYCLE_CO2_FIXATION ACO1, ACO2, FH, IDH1, IDH2, MDH1, MDH2, SDHB, SUCLA2 9 ACO1(3), ACO2(2), FH(1), IDH1(3), IDH2(7), MDH1(1), MDH2(1), SDHB(2), SUCLA2(3) 2077144 23 20 23 4 9 4 0 7 3 0 0.062 0.63 61 MPRPATHWAY Progesterone binding to its intracellular receptor activates the MAPK pathway and induces oocyte maturation; binding to membrane receptor inhibits adenylyl cyclase. ACTA1, ADCY1, CAP1, CCNB1, CDC2, CDC25C, GNAI1, GNAS, GNB1, GNGT1, HRAS, MAPK1, MAPK3, MYT1, PIN1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RPS6KA1, SRC 22 ACTA1(3), ADCY1(4), CCNB1(2), CDC25C(3), GNAI1(3), GNAS(6), GNB1(1), MAPK1(2), MAPK3(2), MYT1(8), PIN1(1), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), RPS6KA1(1), SRC(3) 4735997 46 35 46 17 18 12 2 12 2 0 0.065 0.64 62 SKP2E2FPATHWAY E2F-1, a transcription factor that promotes the G1/S transition, is repressed by Rb and activated by cdk2/cyclin E. CCNA1, CCNE1, CDC34, CDK2, CUL1, E2F1, RB1, SKP1A, SKP2, TFDP1 9 CCNA1(4), CCNE1(3), CDK2(2), CUL1(7), RB1(4), SKP2(1), TFDP1(4) 2045955 25 19 25 4 6 3 1 11 3 1 0.065 0.64 63 HSA00520_NUCLEOTIDE_SUGARS_METABOLISM Genes involved in nucleotide sugars metabolism GALE, GALT, TGDS, UGDH, UGP2, UXS1 6 GALE(1), GALT(2), UGDH(3), UGP2(5), UXS1(6) 1182203 17 14 17 5 7 4 0 4 2 0 0.065 0.64 64 HSA04060_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION Genes involved in cytokine-cytokine receptor interaction ACVR1, ACVR1B, ACVR2A, ACVR2B, AMH, AMHR2, BMP2, BMP7, BMPR1A, BMPR1B, BMPR2, CCL1, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL2, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CCL3, CCL4, CCL5, CCL7, CCL8, CCR1, CCR2, CCR3, CCR4, CCR5, CCR6, CCR7, CCR8, CCR9, CD27, CD40, CD40LG, CD70, CLCF1, CNTF, CNTFR, CRLF2, CSF1, CSF1R, CSF2, CSF2RA, CSF2RB, CSF3, CSF3R, CTF1, CX3CL1, CX3CR1, CXCL1, CXCL10, CXCL11, CXCL12, CXCL13, CXCL14, CXCL16, CXCL2, CXCL3, CXCL5, CXCL6, CXCL9, CXCR3, CXCR4, CXCR6, EDA, EDA2R, EDAR, EGF, EGFR, EPO, EPOR, FAS, FASLG, FLJ78302, FLT1, FLT3, FLT3LG, FLT4, GDF5, GH1, GH2, GHR, HGF, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNE1, IFNG, IFNGR1, IFNGR2, IFNK, IFNW1, IL10, IL10RA, IL10RB, IL11, IL11RA, IL12A, IL12B, IL12RB1, IL12RB2, IL13, IL13RA1, IL15, IL15RA, IL17A, IL17B, IL17RA, IL17RB, IL18, IL18R1, IL18RAP, IL19, IL1A, IL1B, IL1R1, IL1R2, IL1RAP, IL2, IL20, IL20RA, IL21, IL21R, IL22, IL22RA1, IL22RA2, IL23A, IL23R, IL24, IL25, IL26, IL28A, IL28B, IL28RA, IL29, IL2RA, IL2RB, IL2RG, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL6ST, IL7, IL7R, IL8, IL8RA, IL8RB, IL9, IL9R, INHBA, INHBB, INHBC, INHBE, KDR, KIT, KITLG, LEP, LEPR, LIF, LIFR, LOC728045, LTA, LTB, LTBR, MET, MPL, NGFR, OSM, OSMR, PDGFB, PDGFC, PDGFRA, PDGFRB, PF4, PF4V1, PLEKHO2, PPBP, PRL, PRLR, RELT, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF11A, TNFRSF11B, TNFRSF12A, TNFRSF13B, TNFRSF13C, TNFRSF14, TNFRSF17, TNFRSF18, TNFRSF19, TNFRSF1A, TNFRSF1B, TNFRSF21, TNFRSF25, TNFRSF4, TNFRSF6B, TNFRSF8, TNFRSF9, TNFSF10, TNFSF11, TNFSF12, TNFSF13, TNFSF13B, TNFSF14, TNFSF15, TNFSF18, TNFSF4, TNFSF8, TNFSF9, TPO, TSLP, VEGFA, VEGFB, VEGFC, XCL1, XCL2, XCR1 240 ACVR1(3), ACVR2B(3), AMHR2(2), BMP7(5), BMPR1A(4), BMPR1B(9), BMPR2(7), CCL13(1), CCL15(1), CCL18(1), CCL23(2), CCL27(3), CCL7(1), CCL8(1), CCR1(5), CCR3(3), CCR5(1), CCR6(2), CCR7(1), CCR8(4), CCR9(4), CD27(3), CD40LG(6), CD70(5), CNTF(2), CNTFR(2), CSF1(1), CSF1R(3), CSF2RB(7), CSF3R(9), CX3CR1(1), CXCL11(2), CXCL12(1), CXCL14(1), CXCL5(1), CXCL6(1), CXCL9(2), CXCR4(3), EDA(1), EDA2R(2), EDAR(1), EGF(3), EGFR(10), FASLG(1), FLT1(9), FLT3(3), FLT3LG(1), FLT4(4), GDF5(1), GH1(1), GH2(1), GHR(6), HGF(5), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), IFNAR1(3), IFNAR2(1), IFNB1(1), IFNG(1), IFNGR1(2), IFNGR2(1), IL10(1), IL10RA(1), IL10RB(4), IL11(1), IL11RA(1), IL12B(2), IL12RB1(2), IL12RB2(5), IL13(1), IL13RA1(1), IL15(1), IL15RA(1), IL17A(1), IL17RA(5), IL17RB(1), IL18RAP(2), IL19(1), IL1A(1), IL1R1(3), IL1R2(3), IL2(3), IL20(2), IL20RA(4), IL21(2), IL21R(3), IL22(2), IL22RA1(1), IL23R(2), IL24(2), IL25(1), IL26(3), IL28RA(3), IL2RA(2), IL2RB(1), IL3(3), IL4(3), IL4R(1), IL5RA(4), IL6(1), IL6R(2), IL6ST(2), IL7(1), IL7R(2), IL9(1), INHBB(1), INHBC(2), KDR(8), KIT(6), KITLG(2), LEP(1), LEPR(5), LTB(1), LTBR(2), MET(4), MPL(1), NGFR(2), OSM(1), OSMR(4), PDGFC(2), PDGFRA(13), PDGFRB(5), PLEKHO2(5), PRL(2), PRLR(2), RELT(2), TGFB1(1), TGFB2(5), TGFBR1(6), TNFRSF10A(3), TNFRSF10B(2), TNFRSF11A(2), TNFRSF11B(4), TNFRSF13B(4), TNFRSF17(2), TNFRSF19(3), TNFRSF1A(1), TNFRSF21(4), TNFRSF4(1), TNFRSF8(1), TNFRSF9(2), TNFSF10(1), TNFSF11(1), TNFSF12(2), TNFSF13(2), TNFSF14(3), TNFSF15(3), TNFSF18(1), TNFSF4(1), TNFSF8(1), TPO(8), TSLP(2), VEGFA(2), VEGFB(2), VEGFC(3), XCL2(1) 38724312 425 93 419 150 145 93 7 126 53 1 0.066 0.64 65 INOSITOL_METABOLISM ALDH6A1, ALDOA, ALDOB, ALDOC, TPI1 5 ALDH6A1(3), ALDOA(1), ALDOB(5), ALDOC(1), TPI1(1) 886657 11 11 11 1 2 0 0 9 0 0 0.068 0.64 66 RBPATHWAY The ATM protein kinase recognizes DNA damage and blocks cell cycle progression by phosphorylating chk1 and p53, which normally inhibits Rb to allow G1/S transitions. ATM, CDC2, CDC25A, CDC25B, CDC25C, CDK2, CDK4, CHEK1, MYT1, RB1, TP53, WEE1, YWHAH 10 CDC25A(2), CDC25B(5), CDC25C(3), CDK2(2), CDK4(2), CHEK1(1), MYT1(8), RB1(4), WEE1(3) 2490970 30 21 30 5 7 8 0 12 2 1 0.076 0.71 67 TCRAPATHWAY The kinases Lck and Fyn phosphorylate and activate the T cell receptor, which recognizes antigen-bound MHCII and leads to T cell activation. CD3D, CD3E, CD3G, CD3Z, CD4, FYN, HLA-DRA, HLA-DRB1, LCK, PTPRC, TRA@, TRB@, ZAP70 10 CD3D(1), CD3G(2), CD4(2), FYN(4), HLA-DRA(4), HLA-DRB1(1), LCK(2), PTPRC(9), ZAP70(4) 2087736 29 19 29 8 7 10 2 3 5 2 0.081 0.74 68 LONGEVITYPATHWAY Caloric restriction in animals often increases lifespan, which may occur via decreased IGF receptor expression and consequent expression of stress-resistance proteins. AKT1, CAT, FOXO3A, GH1, GHR, HRAS, IGF1, IGF1R, PIK3CA, PIK3R1, SHC1, SOD1, SOD2, SOD3 12 AKT1(2), CAT(2), GH1(1), GHR(6), IGF1(2), IGF1R(7), PIK3R1(5), SHC1(3), SOD2(4) 2576908 32 23 31 7 13 4 1 9 5 0 0.082 0.74 69 HSA04610_COMPLEMENT_AND_COAGULATION_CASCADES Genes involved in complement and coagulation cascades A2M, BDKRB1, BDKRB2, C1QA, C1QB, C1QC, C1R, C1S, C2, C3, C3AR1, C4A, C4B, C4BPA, C4BPB, C5, C5AR1, C6, C7, C8A, C8B, C8G, C9, CD46, CD55, CD59, CFB, CFD, CFH, CFI, CPB2, CR1, CR2, F10, F11, F12, F13A1, F13B, F2, F2R, F3, F5, F7, F8, F9, FGA, FGB, FGG, KLKB1, KNG1, MASP1, MASP2, MBL2, PLAT, PLAU, PLAUR, PLG, PROC, PROS1, SERPINA1, SERPINA5, SERPINC1, SERPIND1, SERPINE1, SERPINF2, SERPING1, TFPI, THBD, VWF 66 A2M(8), BDKRB2(2), C1QB(1), C1QC(3), C1R(2), C1S(3), C3(10), C3AR1(2), C4BPA(2), C5(9), C5AR1(2), C6(10), C7(2), C8A(3), C9(4), CD46(2), CD55(3), CFB(2), CFH(10), CFI(2), CPB2(1), CR1(7), CR2(9), F10(1), F11(4), F12(2), F13A1(8), F13B(3), F2(2), F3(1), F5(14), F7(2), F8(15), F9(6), FGA(11), FGB(1), FGG(4), KLKB1(4), KNG1(3), MASP1(9), MASP2(4), PLAT(4), PLAU(2), PLAUR(3), PLG(7), PROC(1), PROS1(3), SERPINA5(3), SERPINC1(3), SERPIND1(1), SERPINE1(1), SERPING1(3), THBD(2), VWF(10) 20817035 236 67 233 84 67 62 5 75 26 1 0.083 0.74 70 SETPATHWAY Cytotoxic T cells release perforin, which to allow entry into target cells of granzyme B, which activates caspases, and granzyme A, which induces caspase-independent apoptosis. ANP32A, APEX1, CREBBP, DFFA, DFFB, GZMA, GZMB, HMGB2, NME1, PRF1, SET 11 ANP32A(1), APEX1(2), CREBBP(21), DFFA(2), DFFB(2), GZMA(2), GZMB(1), HMGB2(1) 2492554 32 22 32 8 7 13 1 5 6 0 0.086 0.76 71 TRYPTOPHAN_METABOLISM AANAT, ABP1, ACAT1, ACAT2, ACMSD, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, AOC2, AOC3, AOX1, ASMT, CAT, CYP19A1, CYP1A1, CYP1A2, CYP2A6, CYP2A6, CYP2A7, CYP2A7P1, CYP2A13, CYP2B6, CYP2C18, CYP2C19, CYP2C19, CYP2C9, CYP2C8, CYP2C9, CYP2D6, CYP2E1, CYP2F1, CYP2J2, CYP3A4, CYP3A5, CYP3A7, CYP4B1, CYP4F8, CYP51A1, DDC, ECHS1, EHHADH, GCDH, HAAO, HADHA, INDO, KMO, KYNU, MAOA, MAOB, SDS, TDO2, TPH1, WARS, WARS2 53 ABP1(1), ACAT1(1), ACAT2(2), ACMSD(3), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), AOC2(4), AOC3(4), AOX1(5), CAT(2), CYP19A1(5), CYP1A1(6), CYP1A2(2), CYP2A13(6), CYP2A6(3), CYP2A7(5), CYP2C19(4), CYP2C8(2), CYP2C9(4), CYP2E1(5), CYP2F1(3), CYP2J2(3), CYP3A4(1), CYP3A5(3), CYP3A7(4), CYP4B1(8), CYP4F8(4), CYP51A1(3), DDC(1), ECHS1(2), EHHADH(2), GCDH(3), HAAO(2), HADHA(2), KMO(3), KYNU(6), MAOA(2), SDS(2), TDO2(2), TPH1(1), WARS(1), WARS2(2) 12726551 152 54 152 38 57 36 2 45 11 1 0.090 0.78 72 VITCBPATHWAY Vitamin C (ascorbic acid), in addition to its role in collagen modification, serves as an antioxidant and is imported into cells by Svct2 in the brain and Svct1 in intestinal epithelium. COL4A1, COL4A2, COL4A3, COL4A4, COL4A5, COL4A6, P4HB, SLC23A1, SLC23A2, SLC2A1, SLC2A3 11 COL4A1(12), COL4A2(3), COL4A3(3), COL4A4(8), COL4A5(17), COL4A6(15), P4HB(2), SLC23A1(2), SLC23A2(6), SLC2A3(1) 6016786 69 34 68 15 16 17 2 20 14 0 0.091 0.78 73 SRCRPTPPATHWAY Activation of Src by Protein-tyrosine phosphatase alpha CCNB1, CDC2, CDC25A, CDC25B, CDC25C, CSK, GRB2, PRKCA, PRKCB1, PTPRA, SRC 9 CCNB1(2), CDC25A(2), CDC25B(5), CDC25C(3), CSK(1), GRB2(2), PRKCA(2), PTPRA(2), SRC(3) 2170074 22 19 22 8 5 6 1 10 0 0 0.095 0.80 74 RAC1PATHWAY Rac-1 is a Rho family G protein that stimulates formation of actin-dependent structures such as filopodia and lamellopodia. ARFIP2, CDK5, CDK5R1, CFL1, CHN1, LIMK1, MAP3K1, MYL2, MYLK, NCF2, PAK1, PDGFRA, PIK3CA, PIK3R1, PLD1, PPP1R12B, RAC1, RALBP1, RPS6KB1, TRIO, VAV1, WASF1 21 ARFIP2(2), CDK5R1(1), CFL1(1), CHN1(1), LIMK1(4), MAP3K1(6), MYL2(1), MYLK(11), NCF2(1), PAK1(4), PDGFRA(13), PIK3R1(5), PLD1(8), PPP1R12B(5), RALBP1(4), RPS6KB1(3), TRIO(12), VAV1(11), WASF1(1) 7674741 94 42 93 28 31 26 3 16 17 1 0.11 0.86 75 HSA04520_ADHERENS_JUNCTION Genes involved in adherens junction ACP1, ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, ACVR1B, ACVR1C, BAIAP2, CDC42, CDH1, CREBBP, CSNK2A1, CSNK2A2, CSNK2B, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTNND1, EGFR, EP300, ERBB2, FARP2, FER, FGFR1, FYN, IGF1R, INSR, IQGAP1, LEF1, LMO7, MAP3K7, MAPK1, MAPK3, MET, MLLT4, NLK, PARD3, PTPN1, PTPN6, PTPRB, PTPRF, PTPRJ, PTPRM, PVRL1, PVRL2, PVRL3, PVRL4, RAC1, RAC2, RAC3, RHOA, SMAD2, SMAD3, SMAD4, SNAI1, SNAI2, SORBS1, SRC, SSX2IP, TCF7, TCF7L1, TCF7L2, TGFBR1, TGFBR2, TJP1, VCL, WAS, WASF1, WASF2, WASF3, WASL, YES1 69 ACP1(2), ACTB(2), ACTN1(3), ACTN2(7), ACTN3(2), ACTN4(2), ACVR1C(2), CDH1(4), CREBBP(21), CSNK2A1(4), CSNK2A2(2), CSNK2B(2), CTNNA1(10), CTNNA2(10), CTNNA3(9), CTNNB1(8), CTNND1(5), EGFR(10), EP300(13), ERBB2(6), FARP2(5), FER(4), FGFR1(3), FYN(4), IGF1R(7), INSR(5), IQGAP1(10), LEF1(4), LMO7(18), MAP3K7(2), MAPK1(2), MAPK3(2), MET(4), MLLT4(3), NLK(1), PARD3(5), PTPN1(4), PTPN6(4), PTPRB(4), PTPRF(8), PTPRJ(3), PTPRM(19), PVRL1(4), PVRL2(3), PVRL3(1), PVRL4(4), SMAD3(6), SNAI1(1), SNAI2(1), SORBS1(7), SRC(3), SSX2IP(3), TCF7(3), TCF7L1(3), TGFBR1(6), TJP1(5), VCL(1), WAS(1), WASF1(1), WASF2(2), WASF3(2), WASL(5), YES1(1) 26567748 308 79 304 94 112 81 3 80 32 0 0.11 0.86 76 CDC25PATHWAY The protein phosphatase Cdc25 is phosphorylated by Chk1 and activates Cdc2 to stimulate eukaryotic cells into M phase. ATM, CDC2, CDC25A, CDC25B, CDC25C, CHEK1, MYT1, WEE1, YWHAH 7 CDC25A(2), CDC25B(5), CDC25C(3), CHEK1(1), MYT1(8), WEE1(3) 1775025 22 17 22 3 6 6 0 8 2 0 0.11 0.86 77 HSA00251_GLUTAMATE_METABOLISM Genes involved in glutamate metabolism ABAT, ADC, ALDH4A1, ALDH5A1, CAD, CPS1, EARS2, EPRS, GAD1, GAD2, GCLC, GCLM, GFPT1, GFPT2, GLS, GLS2, GLUD1, GLUD2, GLUL, GMPS, GNPNAT1, GOT1, GOT2, GPT, GPT2, GSR, GSS, NADSYN1, NAGK, PPAT, QARS 31 ABAT(5), ADC(1), ALDH4A1(2), ALDH5A1(4), CAD(10), CPS1(8), EPRS(10), GAD1(7), GAD2(4), GCLC(4), GCLM(1), GFPT1(3), GFPT2(3), GLS2(2), GLUD1(2), GLUD2(4), GLUL(3), GMPS(5), GOT1(5), GOT2(1), GPT2(2), GSR(1), GSS(4), NADSYN1(2), NAGK(2), PPAT(3), QARS(7) 9191538 105 45 105 24 39 28 2 29 7 0 0.11 0.86 78 CALCIUM_REGULATION_IN_CARDIAC_CELLS ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADRA1A, ADRA1B, ADRA1D, ADRB1, ADRB2, ADRB3, ANXA6, ARRB1, ARRB2, ATP1A4, ATP1B1, ATP1B2, ATP1B3, ATP2A2, ATP2A3, ATP2B1, ATP2B2, ATP2B3, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1S, CACNB1, CACNB3, CALM1, CALM2, CALM3, CALR, CAMK1, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CASQ1, CASQ2, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, FXYD2, GJA1, GJA12, GJA4, GJA5, GJB1, GJB2, GJB3, GJB4, GJB5, GJB6, GNA11, GNAI2, GNAI3, GNAO1, GNAQ, GNAZ, GNB1, GNB2, GNB3, GNB4, GNB5, GNG12, GNG13, GNG2, GNG3, GNG4, GNG5, GNG7, GNGT1, GRK4, GRK5, GRK6, ITPR1, ITPR2, ITPR3, KCNB1, KCNJ3, KCNJ5, MGC11266, MYCBP, NME7, PEA15, PKIA, PKIB, PKIG, PLCB3, PLN, PRKACA, PRKACB, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, PRKCZ, PRKD1, RGS1, RGS10, RGS11, RGS14, RGS16, RGS17, RGS18, RGS19, RGS2, RGS20, RGS3, RGS4, RGS5, RGS6, RGS7, RGS9, RYR1, RYR2, RYR3, SARA1, SFN, SLC8A1, SLC8A3, USP5, YWHAB, YWHAH, YWHAQ, YWHAQ, MIB1 139 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), ADRA1A(5), ADRA1B(4), ADRA1D(2), ADRB1(2), ADRB3(1), ANXA6(2), ARRB1(1), ATP1A4(6), ATP1B1(1), ATP2A2(5), ATP2A3(3), ATP2B1(7), ATP2B2(7), ATP2B3(4), CACNA1A(8), CACNA1B(7), CACNA1C(10), CACNA1D(7), CACNA1E(15), CACNA1S(10), CACNB1(1), CACNB3(1), CAMK1(1), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CAMK4(2), CASQ1(1), CASQ2(1), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), GJA1(3), GJA4(2), GJA5(3), GJB1(3), GJB3(3), GJB4(1), GNA11(1), GNAO1(5), GNAQ(3), GNAZ(1), GNB1(1), GNB3(3), GNB4(3), GNB5(1), GNG3(2), GNG7(1), GRK4(5), GRK5(3), GRK6(3), ITPR1(11), ITPR2(12), ITPR3(11), KCNB1(2), KCNJ3(6), KCNJ5(3), NME7(3), PEA15(1), PKIA(1), PKIB(1), PLCB3(3), PRKACB(1), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCQ(4), PRKD1(10), RGS1(1), RGS10(1), RGS14(2), RGS16(2), RGS17(1), RGS18(2), RGS2(1), RGS20(3), RGS3(8), RGS4(2), RGS6(3), RGS7(4), RGS9(4), RYR1(19), RYR2(48), RYR3(31), SLC8A1(11), SLC8A3(4), USP5(3), YWHAB(2), YWHAQ(1) 45039152 482 106 480 206 215 101 12 114 39 1 0.11 0.86 79 ECMPATHWAY Extracellular matrix induces integrin-mediated FAK phosphorylation in epithelial cells, leading to PI3 and MAP kinase activation and actin reorganization. ARHA, ARHGAP5, DIAPH1, FYN, GSN, HRAS, ITGA1, ITGB1, MAP2K1, MAPK1, MAPK3, MYL2, MYLK, PFN1, PIK3CA, PIK3R1, PTK2, PXN, RAF1, ROCK1, SHC1, SRC, TLN1 21 ARHGAP5(6), DIAPH1(1), FYN(4), ITGA1(3), ITGB1(6), MAP2K1(3), MAPK1(2), MAPK3(2), MYL2(1), MYLK(11), PIK3R1(5), PTK2(5), RAF1(4), ROCK1(8), SHC1(3), SRC(3), TLN1(5) 8316868 72 43 69 19 21 18 2 17 14 0 0.11 0.86 80 FCER1PATHWAY In mast cells, Fc epsilon receptor 1 activates BTK, PKC, and the MAP kinase pathway to promote degranulation and arachnidonic acid release. BTK, CALM1, CALM2, CALM3, ELK1, FCER1A, FCER1G, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP2K4, MAP2K7, MAP3K1, MAPK1, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, PAK2, PIK3CA, PIK3R1, PLA2G4A, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCB1, RAF1, SHC1, SOS1, SYK, SYT1, VAV1 35 BTK(6), FCER1A(2), GRB2(2), LYN(4), MAP2K1(3), MAP3K1(6), MAPK1(2), MAPK3(2), MAPK8(2), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), PAK2(2), PIK3R1(5), PLA2G4A(5), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), RAF1(4), SHC1(3), SOS1(5), SYT1(1), VAV1(11) 9241679 89 43 87 22 33 19 5 18 14 0 0.12 0.87 81 BADPATHWAY When phosphorylated, BAD is inhibited by sequestration; when non-phosphorylated, it promotes apoptosis by inactivating pro-survival BCL-XL and BCL-2. ADCY1, AKT1, BAD, BAX, BCL2, BCL2L1, CSF2RB, IGF1, IGF1R, IL3, IL3RA, KIT, KITLG, PIK3CA, PIK3R1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, YWHAH 20 ADCY1(4), AKT1(2), BAD(1), BAX(1), BCL2(1), BCL2L1(1), CSF2RB(7), IGF1(2), IGF1R(7), IL3(3), KIT(6), KITLG(2), PIK3R1(5), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 4366013 49 32 48 14 21 10 2 9 7 0 0.12 0.87 82 HSA04510_FOCAL_ADHESION Genes involved in focal adhesion ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, AKT1, AKT2, AKT3, ARHGAP5, BAD, BCAR1, BCL2, BIRC2, BIRC3, BIRC4, BRAF, CAPN2, CAV1, CAV2, CAV3, CCND1, CCND2, CCND3, CDC42, CHAD, COL11A1, COL11A2, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, COMP, CRK, CRKL, CTNNB1, DIAPH1, DOCK1, EGF, EGFR, ELK1, ERBB2, FARP2, FIGF, FLNA, FLNB, FLNC, FLT1, FN1, FYN, GRB2, GRLF1, GSK3B, HGF, HRAS, IBSP, IGF1, IGF1R, ILK, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAV, ITGB1, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, JUN, KDR, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, LOC653852, MAP2K1, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MET, MLCK, MRCL3, MRLC2, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLK, MYLK2, MYLPF, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PARVA, PARVB, PARVG, PDGFA, PDGFB, PDGFC, PDGFD, PDGFRA, PDGFRB, PDPK1, PGF, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP5K1C, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PRKCA, PRKCB1, PRKCG, PTEN, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, RAP1A, RAP1B, RAPGEF1, RELN, RHOA, ROCK1, ROCK2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SPP1, SRC, THBS1, THBS2, THBS3, THBS4, TLN1, TLN2, TNC, TNN, TNR, TNXB, VASP, VAV1, VAV2, VAV3, VCL, VEGFA, VEGFB, VEGFC, VTN, VWF, ZYX 187 ACTB(2), ACTN1(3), ACTN2(7), ACTN3(2), ACTN4(2), AKT1(2), AKT2(5), ARHGAP5(6), BAD(1), BCL2(1), BIRC2(2), BIRC3(2), CAPN2(5), CAV2(1), CAV3(2), CCND2(1), CCND3(1), CHAD(6), COL11A1(18), COL11A2(10), COL1A1(11), COL1A2(16), COL2A1(8), COL3A1(10), COL4A1(12), COL4A2(3), COL4A4(8), COL4A6(15), COL5A1(13), COL5A2(10), COL5A3(5), COL6A6(15), COMP(2), CRKL(2), CTNNB1(8), DIAPH1(1), DOCK1(5), EGF(3), EGFR(10), ERBB2(6), FARP2(5), FLNA(2), FLNB(14), FLNC(11), FLT1(9), FN1(17), FYN(4), GRB2(2), GRLF1(7), GSK3B(7), HGF(5), IBSP(3), IGF1(2), IGF1R(7), ITGA1(3), ITGA10(3), ITGA11(2), ITGA2(5), ITGA2B(2), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGA7(6), ITGA8(5), ITGA9(4), ITGAV(1), ITGB1(6), ITGB3(7), ITGB4(2), ITGB5(5), ITGB6(6), ITGB7(4), ITGB8(4), KDR(8), LAMA1(22), LAMA2(22), LAMA3(12), LAMA4(9), LAMB1(8), LAMB2(2), LAMB3(9), LAMB4(12), LAMC1(7), LAMC2(7), LAMC3(6), MAP2K1(3), MAPK1(2), MAPK10(4), MAPK3(2), MAPK8(2), MAPK9(3), MET(4), MYL2(1), MYL7(1), MYLK(11), MYLK2(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PARVA(1), PARVB(5), PARVG(3), PDGFA(1), PDGFC(2), PDGFD(3), PDGFRA(13), PDGFRB(5), PDPK1(1), PGF(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PIP5K1C(3), PPP1CB(1), PPP1CC(1), PPP1R12A(2), PRKCA(2), PRKCG(8), PTK2(5), RAF1(4), RAP1A(1), RAP1B(2), RAPGEF1(4), RELN(24), ROCK1(8), ROCK2(2), SHC1(3), SHC3(1), SHC4(5), SOS1(5), SOS2(9), SPP1(1), SRC(3), THBS1(8), THBS2(10), THBS3(2), THBS4(1), TLN1(5), TLN2(5), TNC(13), TNN(15), TNR(19), TNXB(14), VASP(3), VAV1(11), VAV2(2), VAV3(10), VCL(1), VEGFA(2), VEGFB(2), VEGFC(3), VTN(3), VWF(10) 84097156 883 129 875 318 311 212 21 238 100 1 0.12 0.87 83 CYTOKINEPATHWAY Intercellular signaling in the immune system occurs via secretion of cytokines, which promote antigen-dependent B and T cell response. IFNA1, IFNB1, IFNG, IL10, IL12A, IL12B, IL13, IL14, IL15, IL16, IL17, IL18, IL1A, IL2, IL3, IL4, IL5, IL6, IL8, IL9, LTA, TNF 20 IFNA1(1), IFNB1(1), IFNG(1), IL10(1), IL12B(2), IL13(1), IL15(1), IL16(5), IL1A(1), IL2(3), IL3(3), IL4(3), IL6(1), IL9(1) 2262469 25 19 24 15 11 3 1 9 1 0 0.12 0.87 84 P27PATHWAY p27 blocks the G1/S transition by inhibiting the checkpoint kinase cdk2/cyclin E and is inhibited by cdk2-mediated ubiquitination. CCNE1, CDK2, CDKN1B, CKS1B, CUL1, E2F1, NEDD8, RB1, RBX1, SKP1A, SKP2, TFDP1, UBE2M 12 CCNE1(3), CDK2(2), CDKN1B(1), CKS1B(1), CUL1(7), RB1(4), SKP2(1), TFDP1(4) 2030870 23 18 23 3 4 2 1 11 4 1 0.12 0.87 85 HSA04512_ECM_RECEPTOR_INTERACTION Genes involved in ECM-receptor interaction AGRN, CD36, CD44, CD47, CHAD, COL11A1, COL11A2, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, DAG1, FN1, FNDC1, FNDC3A, FNDC4, FNDC5, GP1BA, GP1BB, GP5, GP6, GP9, HMMR, HSPG2, IBSP, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAV, ITGB1, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, RELN, SDC1, SDC2, SDC3, SDC4, SPP1, SV2A, SV2B, SV2C, THBS1, THBS2, THBS3, THBS4, TNC, TNN, TNR, TNXB, VTN, VWF 85 AGRN(1), CD36(1), CD44(3), CD47(3), CHAD(6), COL11A1(18), COL11A2(10), COL1A1(11), COL1A2(16), COL2A1(8), COL3A1(10), COL4A1(12), COL4A2(3), COL4A4(8), COL4A6(15), COL5A1(13), COL5A2(10), COL5A3(5), COL6A6(15), DAG1(4), FN1(17), FNDC1(15), FNDC3A(5), FNDC4(1), GP1BA(1), GP5(5), GP6(1), HMMR(4), HSPG2(9), IBSP(3), ITGA1(3), ITGA10(3), ITGA11(2), ITGA2(5), ITGA2B(2), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGA7(6), ITGA8(5), ITGA9(4), ITGAV(1), ITGB1(6), ITGB3(7), ITGB4(2), ITGB5(5), ITGB6(6), ITGB7(4), ITGB8(4), LAMA1(22), LAMA2(22), LAMA3(12), LAMA4(9), LAMB1(8), LAMB2(2), LAMB3(9), LAMB4(12), LAMC1(7), LAMC2(7), LAMC3(6), RELN(24), SDC2(2), SDC3(2), SDC4(1), SPP1(1), SV2A(4), SV2B(4), SV2C(4), THBS1(8), THBS2(10), THBS3(2), THBS4(1), TNC(13), TNN(15), TNR(19), TNXB(14), VTN(3), VWF(10) 51346424 568 107 565 221 201 133 11 163 60 0 0.12 0.87 86 LAIRPATHWAY The local acute inflammatory response is mediated by activated macrophages and mast cells or by complement activation. BDK, C3, C5, C6, C7, ICAM1, IL1A, IL6, IL8, ITGA4, ITGAL, ITGB1, ITGB2, SELP, SELPLG, TNF, VCAM1 16 C3(10), C5(9), C6(10), C7(2), ICAM1(2), IL1A(1), IL6(1), ITGA4(3), ITGAL(5), ITGB1(6), ITGB2(4), SELP(4), SELPLG(1), VCAM1(7) 5806177 65 33 64 20 23 17 0 18 6 1 0.12 0.87 87 KREBPATHWAY The Krebs (citric acid) cycle takes place in mitochondria, where it extracts energy in the form of electron carriers NADH and FADH2, which drive the electron transport chain. ACO2, CS, FH, IDH2, MDH1, OGDH, SDHA, SUCLA2 8 ACO2(2), FH(1), IDH2(7), MDH1(1), OGDH(4), SDHA(5), SUCLA2(3) 2198056 23 20 23 6 11 4 0 4 4 0 0.12 0.87 88 SMOOTH_MUSCLE_CONTRACTION ACTA1, ACTA2, ACTC, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADM, ADMR, ARRB1, ARRB2, ATF1, ATF2, ATF3, ATF4, ATF5, ATP2A2, ATP2A3, CACNB3, CALCA, CALM1, CALM2, CALM3, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CMKOR1, CNN1, CNN2, CORIN, CREB3, CREBL1, CREBL1, TNXB, CRH, CRHR1, DGKZ, EDG2, ETS2, FOS, GABPA, GABPB2, GBA2, GJA1, GNAQ, GNB1, GNB2, GNB3, GNB4, GNB5, GNG12, GNG13, GNG2, GNG3, GNG4, GNG5, GNG7, GNGT1, GRK4, GRK5, GRK6, GSTO1, GUCA2A, GUCA2B, GUCY1A3, HEAB, IGFBP1, IGFBP2, IGFBP3, IGFBP4, IGFBP6, IL1B, IL6, ITPR1, ITPR2, ITPR3, JUN, LGR7, LGR8, MAFF, MGC11266, MYL2, MYL4, MYLK2, NFKB1, NOS1, NOS3, OXT, OXTR, PDE4B, PDE4D, PKIA, PKIB, PKIG, PLCB3, PLCD1, PLCG1, PLCG2, PRKACA, PRKACB, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCH, PRKCQ, PRKCZ, PRKD1, RAMP1, RAMP2, RAMP3, RCP9, RGS1, RGS10, RGS11, RGS14, RGS16, RGS17, RGS18, RGS19, RGS2, RGS20, RGS3, RGS4, RGS5, RGS6, RGS7, RGS9, RLN1, RYR1, RYR2, RYR3, SARA1, SFN, SLC8A1, SP1, USP5, YWHAB, YWHAH, YWHAQ, YWHAQ, MIB1 137 ACTA1(3), ACTA2(3), ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), ADM(2), ARRB1(1), ATF1(1), ATF3(1), ATP2A2(5), ATP2A3(3), CACNB3(1), CALCA(4), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CORIN(10), CREB3(2), CRHR1(1), DGKZ(2), ETS2(2), GABPA(4), GABPB2(2), GBA2(5), GJA1(3), GNAQ(3), GNB1(1), GNB3(3), GNB4(3), GNB5(1), GNG3(2), GNG7(1), GRK4(5), GRK5(3), GRK6(3), GSTO1(1), GUCA2B(2), IGFBP1(2), IGFBP2(1), IGFBP3(2), IGFBP4(2), IL6(1), ITPR1(11), ITPR2(12), ITPR3(11), MYL2(1), MYLK2(2), NFKB1(3), NOS1(5), NOS3(2), OXTR(2), PDE4B(2), PDE4D(3), PKIA(1), PKIB(1), PLCB3(3), PLCD1(6), PLCG1(4), PLCG2(9), PRKACB(1), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), PRKCD(3), PRKCE(4), PRKCH(2), PRKCQ(4), PRKD1(10), RAMP1(1), RAMP3(3), RGS1(1), RGS10(1), RGS14(2), RGS16(2), RGS17(1), RGS18(2), RGS2(1), RGS20(3), RGS3(8), RGS4(2), RGS6(3), RGS7(4), RGS9(4), RYR1(19), RYR2(48), RYR3(31), SLC8A1(11), SP1(2), TNXB(14), USP5(3), YWHAB(2), YWHAQ(1) 40494820 428 96 424 158 185 90 12 103 38 0 0.12 0.87 89 RELAPATHWAY Acetylated NF-kB proteins are immune to IkB regulation and promote transcription until the histone deacetylase HDAC3 deacetylates the RelA subunit of NF-kB. CHUK, CREBBP, EP300, FADD, HDAC3, IKBKB, IKBKG, NFKB1, NFKBIA, RELA, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF6 15 CHUK(4), CREBBP(21), EP300(13), HDAC3(2), IKBKB(2), NFKB1(3), RELA(2), RIPK1(2), TNFRSF1A(1), TRADD(1), TRAF6(4) 5218700 55 32 55 17 20 19 2 7 7 0 0.13 0.89 90 HSA04020_CALCIUM_SIGNALING_PATHWAY Genes involved in calcium signaling pathway ADCY1, ADCY2, ADCY3, ADCY4, ADCY7, ADCY8, ADCY9, ADORA2A, ADORA2B, ADRA1A, ADRA1B, ADRA1D, ADRB1, ADRB2, ADRB3, AGTR1, ATP2A1, ATP2A2, ATP2A3, ATP2B1, ATP2B2, ATP2B3, ATP2B4, AVPR1A, AVPR1B, BDKRB1, BDKRB2, BST1, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1F, CACNA1G, CACNA1H, CACNA1I, CACNA1S, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CCKAR, CCKBR, CD38, CHP, CHRM1, CHRM2, CHRM3, CHRM5, CHRNA7, CYSLTR1, CYSLTR2, DRD1, EDNRA, EDNRB, EGFR, ERBB2, ERBB3, ERBB4, F2R, GNA11, GNA14, GNA15, GNAL, GNAQ, GNAS, GRIN1, GRIN2A, GRIN2C, GRIN2D, GRM1, GRM5, GRPR, HRH1, HRH2, HTR2A, HTR2B, HTR2C, HTR4, HTR5A, HTR6, HTR7, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, LHCGR, LTB4R2, MLCK, MYLK, MYLK2, NOS1, NOS2A, NOS3, NTSR1, OXTR, P2RX1, P2RX2, P2RX3, P2RX4, P2RX5, P2RX7, P2RXL1, PDE1A, PDE1B, PDE1C, PDGFRA, PDGFRB, PHKA1, PHKA2, PHKB, PHKG1, PHKG2, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PLN, PPID, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PTAFR, PTGER1, PTGER3, PTGFR, PTK2B, RYR1, RYR2, RYR3, SLC25A4, SLC25A5, SLC25A6, SLC8A1, SLC8A2, SLC8A3, SPHK1, SPHK2, TACR1, TACR2, TACR3, TBXA2R, TNNC1, TNNC2, TRHR, TRPC1, VDAC1, VDAC2, VDAC3 166 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY7(3), ADCY8(11), ADCY9(4), ADORA2A(3), ADORA2B(1), ADRA1A(5), ADRA1B(4), ADRA1D(2), ADRB1(2), ADRB3(1), AGTR1(3), ATP2A1(6), ATP2A2(5), ATP2A3(3), ATP2B1(7), ATP2B2(7), ATP2B3(4), ATP2B4(5), AVPR1A(3), AVPR1B(3), BDKRB2(2), CACNA1A(8), CACNA1B(7), CACNA1C(10), CACNA1D(7), CACNA1E(15), CACNA1F(12), CACNA1G(10), CACNA1H(2), CACNA1I(3), CACNA1S(10), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CAMK4(2), CCKAR(1), CCKBR(3), CD38(1), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), CYSLTR1(3), CYSLTR2(3), DRD1(1), EDNRA(4), EDNRB(7), EGFR(10), ERBB2(6), ERBB3(11), GNA11(1), GNA14(5), GNA15(3), GNAL(3), GNAQ(3), GNAS(6), GRIN1(1), GRIN2A(15), GRIN2C(2), GRIN2D(3), GRM1(9), GRM5(8), GRPR(3), HRH1(1), HRH2(4), HTR2A(2), HTR2B(1), HTR2C(6), HTR4(2), HTR5A(2), HTR7(6), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), LHCGR(4), MYLK(11), MYLK2(2), NOS1(5), NOS3(2), NTSR1(1), OXTR(2), P2RX1(1), P2RX2(1), P2RX3(2), P2RX4(2), P2RX5(1), P2RX7(2), PDE1A(3), PDE1B(2), PDE1C(7), PDGFRA(13), PDGFRB(5), PHKA1(4), PHKA2(5), PHKB(4), PHKG2(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLCD1(6), PLCD3(2), PLCD4(2), PLCE1(7), PLCG1(4), PLCG2(9), PLCZ1(3), PPID(2), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKX(2), PTAFR(1), PTGER3(6), PTGFR(6), PTK2B(1), RYR1(19), RYR2(48), RYR3(31), SLC25A4(1), SLC25A5(1), SLC8A1(11), SLC8A2(3), SLC8A3(4), SPHK2(1), TACR1(2), TACR2(1), TACR3(4), TNNC2(1), TRHR(6), TRPC1(5), VDAC1(1), VDAC3(1) 63640145 711 122 705 284 301 162 17 171 58 2 0.13 0.89 91 GLUTATHIONE_METABOLISM ANPEP, G6PD, GCLC, GCLM, GGT1, GPX1, GPX2, GPX3, GPX4, GPX5, GSS, GSTA1, GSTA2, GSTA3, GSTA4, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, IDH1, IDH2, MGST1, MGST2, MGST3, PGD 28 ANPEP(5), G6PD(2), GCLC(4), GCLM(1), GPX1(1), GPX2(2), GPX3(1), GPX5(4), GSS(4), GSTA1(1), GSTA3(3), GSTM2(2), GSTM3(2), GSTM4(2), GSTM5(1), GSTZ1(2), IDH1(3), IDH2(7), MGST1(2), MGST3(1), PGD(1) 3955898 51 28 51 6 11 13 2 19 6 0 0.13 0.89 92 EDG1PATHWAY The lipid S1P is an EDG1 ligand promoting chemotaxis via Rac1 and cell survival and proliferation via ERK activation. ADCY1, AKT1, ARHA, ASAH1, EDG1, GNAI1, GNB1, GNGT1, ITGAV, ITGB3, MAPK1, MAPK3, PDGFA, PDGFRA, PIK3CA, PIK3R1, PLCB1, PRKCA, PRKCB1, PTK2, RAC1, SKIP, SMPD1, SMPD2, SPHK1, SRC 21 ADCY1(4), AKT1(2), ASAH1(3), GNAI1(3), GNB1(1), ITGAV(1), ITGB3(7), MAPK1(2), MAPK3(2), PDGFA(1), PDGFRA(13), PIK3R1(5), PLCB1(8), PRKCA(2), PTK2(5), SMPD1(6), SRC(3) 5854047 68 33 68 23 22 17 3 16 9 1 0.13 0.89 93 INFLAMPATHWAY Interleukins and TNF serve as signals to coordinate the inflammatory response, in which macrophages recruit and activate neutrophils, fibroblasts, and T cells. CD4, CSF1, CSF2, CSF3, HLA-DRA, HLA-DRB1, IFNA1, IFNB1, IFNG, IL10, IL11, IL12A, IL12B, IL13, IL15, IL1A, IL2, IL3, IL4, IL5, IL6, IL7, IL8, LTA, PDGFA, TGFB1, TGFB2, TGFB3, TNF 29 CD4(2), CSF1(1), HLA-DRA(4), HLA-DRB1(1), IFNA1(1), IFNB1(1), IFNG(1), IL10(1), IL11(1), IL12B(2), IL13(1), IL15(1), IL1A(1), IL2(3), IL3(3), IL4(3), IL6(1), IL7(1), PDGFA(1), TGFB1(1), TGFB2(5) 3054175 36 21 35 17 15 5 0 11 3 2 0.14 0.90 94 BIOPEPTIDESPATHWAY Extracellular signaling peptides exert biological effects via G-protein coupled receptors (GPCRs), which activate intracellular GTPases. AGT, AGTR2, BDK, CALM1, CALM2, CALM3, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CDK5, F2, FYN, GNA11, GNAI1, GNB1, GNGT1, GRB2, HRAS, JAK2, MAP2K1, MAP2K2, MAPK1, MAPK14, MAPK3, MAPK8, MAPT, MYLK, PLCG1, PRKCA, PRKCB1, PTK2B, RAF1, SHC1, SOS1, STAT1, STAT3, STAT5A, SYT1 37 AGT(4), AGTR2(4), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), F2(2), FYN(4), GNA11(1), GNAI1(3), GNB1(1), GRB2(2), JAK2(6), MAP2K1(3), MAPK1(2), MAPK14(3), MAPK3(2), MAPK8(2), MAPT(4), MYLK(11), PLCG1(4), PRKCA(2), PTK2B(1), RAF1(4), SHC1(3), SOS1(5), STAT1(6), STAT3(2), SYT1(1) 9795992 89 42 87 27 25 24 9 21 9 1 0.14 0.90 95 MYOSINPATHWAY Myosin light chain kinase phosphorylates myosin and promotes muscle contraction and platelet formation; myosin phosphatase antagonizes these processes. ARHGAP5, ARHGEF1, GNA12, GNA13, GNAQ, GNB1, GNGT1, MYL2, MYLK, PLCB1, PPP1R12B, PRKCA, PRKCB1, PRKCL1, ROCK1 13 ARHGAP5(6), ARHGEF1(4), GNA12(2), GNA13(2), GNAQ(3), GNB1(1), MYL2(1), MYLK(11), PLCB1(8), PPP1R12B(5), PRKCA(2), ROCK1(8) 4845649 53 30 51 14 13 10 3 15 12 0 0.14 0.90 96 IL7PATHWAY IL-7 is required for B and T cell development and proliferation and may contribute to activation of VDJ recombination. BCL2, CREBBP, EP300, FYN, IL2RG, IL7, IL7R, JAK1, JAK3, LCK, NMI, PIK3CA, PIK3R1, PTK2B, STAT5A, STAT5B 15 BCL2(1), CREBBP(21), EP300(13), FYN(4), IL7(1), IL7R(2), JAK1(3), JAK3(6), LCK(2), NMI(1), PIK3R1(5), PTK2B(1), STAT5B(2) 6077320 62 35 61 20 20 18 2 10 12 0 0.14 0.90 97 NGFPATHWAY Nerve growth factor (NGF) stimulates neural survival and proliferation via the TrkA and p75 receptors, which induce DAG and IP3 production and activate Ras. CSNK2A1, DPM2, ELK1, FOS, GRB2, HRAS, JUN, KLK2, MAP2K1, MAPK3, MAPK8, NGFB, NGFR, PIK3CA, PIK3R1, PLCG1, RAF1, SHC1, SOS1 16 CSNK2A1(4), GRB2(2), MAP2K1(3), MAPK3(2), MAPK8(2), NGFR(2), PIK3R1(5), PLCG1(4), RAF1(4), SHC1(3), SOS1(5) 3797341 36 24 34 7 10 9 4 8 5 0 0.15 0.90 98 CHREBPPATHWAY Carbohydrate responsive element binding protein (chREBP) is a transcription factor inhibited by cAMP and activated by high carbohydrate levels. ADCY1, BG1, BUCS1, GNAS, GNB1, GNGT1, PPP2CA, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKACB, PRKACG, PRKAG1, PRKAG2, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, WBSCR14 17 ADCY1(4), GNAS(6), GNB1(1), PPP2CA(1), PRKAA1(2), PRKAA2(6), PRKAB1(1), PRKAB2(1), PRKACB(1), PRKACG(2), PRKAG1(1), PRKAG2(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 3516126 32 26 32 16 12 6 2 9 3 0 0.15 0.90 99 HSA04630_JAK_STAT_SIGNALING_PATHWAY Genes involved in Jak-STAT signaling pathway AKT1, AKT2, AKT3, BCL2L1, CBL, CBLB, CBLC, CCND1, CCND2, CCND3, CISH, CLCF1, CNTF, CNTFR, CREBBP, CRLF2, CSF2, CSF2RA, CSF2RB, CSF3, CSF3R, CTF1, EP300, EPO, EPOR, GH1, GH2, GHR, GRB2, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNE1, IFNG, IFNGR1, IFNGR2, IFNK, IFNW1, IL10, IL10RA, IL10RB, IL11, IL11RA, IL12A, IL12B, IL12RB1, IL12RB2, IL13, IL13RA1, IL13RA2, IL15, IL15RA, IL19, IL2, IL20, IL20RA, IL21, IL21R, IL22, IL22RA1, IL22RA2, IL23A, IL23R, IL24, IL26, IL28A, IL28B, IL28RA, IL29, IL2RA, IL2RB, IL2RG, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL6ST, IL7, IL7R, IL9, IL9R, IRF9, JAK1, JAK2, JAK3, LEP, LEPR, LIF, LIFR, MPL, MYC, OSM, OSMR, PIAS1, PIAS2, PIAS3, PIAS4, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIM1, PRL, PRLR, PTPN11, PTPN6, SOCS1, SOCS2, SOCS3, SOCS4, SOCS5, SOCS7, SOS1, SOS2, SPRED1, SPRED2, SPRY1, SPRY2, SPRY3, SPRY4, STAM, STAM2, STAT1, STAT2, STAT3, STAT4, STAT5A, STAT5B, STAT6, TPO, TSLP, TYK2 144 AKT1(2), AKT2(5), BCL2L1(1), CBL(2), CBLB(6), CCND2(1), CCND3(1), CNTF(2), CNTFR(2), CREBBP(21), CSF2RB(7), CSF3R(9), EP300(13), GH1(1), GH2(1), GHR(6), GRB2(2), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), IFNAR1(3), IFNAR2(1), IFNB1(1), IFNG(1), IFNGR1(2), IFNGR2(1), IL10(1), IL10RA(1), IL10RB(4), IL11(1), IL11RA(1), IL12B(2), IL12RB1(2), IL12RB2(5), IL13(1), IL13RA1(1), IL13RA2(2), IL15(1), IL15RA(1), IL19(1), IL2(3), IL20(2), IL20RA(4), IL21(2), IL21R(3), IL22(2), IL22RA1(1), IL23R(2), IL24(2), IL26(3), IL28RA(3), IL2RA(2), IL2RB(1), IL3(3), IL4(3), IL4R(1), IL5RA(4), IL6(1), IL6R(2), IL6ST(2), IL7(1), IL7R(2), IL9(1), IRF9(3), JAK1(3), JAK2(6), JAK3(6), LEP(1), LEPR(5), MPL(1), OSM(1), OSMR(4), PIAS1(3), PIAS2(2), PIAS3(4), PIAS4(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PIM1(1), PRL(2), PRLR(2), PTPN11(2), PTPN6(4), SOCS2(2), SOCS5(2), SOS1(5), SOS2(9), SPRED1(6), SPRED2(5), SPRY1(2), SPRY4(2), STAM(1), STAM2(2), STAT1(6), STAT2(5), STAT3(2), STAT5B(2), STAT6(2), TPO(8), TSLP(2), TYK2(1) 32097533 323 79 318 93 118 66 11 91 36 1 0.15 0.90 100 RHOPATHWAY RhoA is a G protein whose active form stabilizes actin structures such as focal adhesions and activates Rock1, which phosphorylates myosin light chains. ACTR2, ACTR3, ARHA, ARHGAP1, ARHGAP4, ARHGAP5, ARHGAP6, ARHGEF1, ARHGEF11, ARHGEF5, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, BAIAP2, CFL1, DIAPH1, GSN, LIMK1, MYL2, MYLK, OPHN1, PFN1, PIP5K1A, PIP5K1B, PPP1R12B, ROCK1, SRC, TLN1, VCL 30 ACTR2(1), ACTR3(2), ARHGAP4(1), ARHGAP5(6), ARHGAP6(1), ARHGEF1(4), ARHGEF11(9), ARHGEF5(7), ARPC1A(5), ARPC1B(2), ARPC2(1), CFL1(1), DIAPH1(1), LIMK1(4), MYL2(1), MYLK(11), OPHN1(4), PIP5K1A(3), PIP5K1B(1), PPP1R12B(5), ROCK1(8), SRC(3), TLN1(5), VCL(1) 10869363 87 49 85 29 32 15 4 21 15 0 0.15 0.90 101 CXCR4PATHWAY CXCR4 is a G-protein coupled receptor that responds to the ligand SDF-1 by activating Ras and PI3 kinase to promote lymphocyte chemotaxis. BCAR1, CRK, CXCL12, CXCR4, GNAI1, GNAQ, GNB1, GNGT1, HRAS, MAP2K1, MAPK1, MAPK3, NFKB1, PIK3C2G, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTK2, PTK2B, PXN, RAF1, RELA 22 CXCL12(1), CXCR4(3), GNAI1(3), GNAQ(3), GNB1(1), MAP2K1(3), MAPK1(2), MAPK3(2), NFKB1(3), PIK3C2G(7), PIK3R1(5), PLCG1(4), PRKCA(2), PTK2(5), PTK2B(1), RAF1(4), RELA(2) 6071426 51 32 50 14 20 10 2 8 11 0 0.16 0.90 102 HSA00400_PHENYLALANINE_TYROSINE_AND_TRYPTOPHAN_BIOSYNTHESIS Genes involved in phenylalanine, tyrosine and tryptophan biosynthesis FARS2, FARSA, FARSB, GOT1, GOT2, PAH, TAT, YARS, YARS2 9 FARS2(4), FARSA(1), FARSB(7), GOT1(5), GOT2(1), PAH(4), TAT(3), YARS(2), YARS2(3) 2030752 30 18 30 5 10 6 1 8 5 0 0.16 0.90 103 IGF1PATHWAY Growth factor IGF-1 stimulates growth and inhibits apoptosis by activating the MAP kinase pathway in a variety of cell types. CSNK2A1, ELK1, FOS, GRB2, HRAS, IGF1, IGF1R, IRS1, JUN, MAP2K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PTPN11, RAF1, RASA1, SHC1, SOS1, SRF 19 CSNK2A1(4), GRB2(2), IGF1(2), IGF1R(7), IRS1(5), MAP2K1(3), MAPK3(2), MAPK8(2), PIK3R1(5), PTPN11(2), RAF1(4), RASA1(5), SHC1(3), SOS1(5), SRF(3) 5212155 54 32 52 10 15 13 3 16 7 0 0.16 0.90 104 BILE_ACID_BIOSYNTHESIS ACAA1, ACAA2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1C4, AKR1D1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, BAAT, CEL, CYP27A1, CYP7A1, HADHB, SOAT2, SRD5A1, SRD5A2 27 ACAA1(2), ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6), AKR1C4(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), BAAT(2), CEL(1), CYP27A1(3), CYP7A1(4), HADHB(1), SOAT2(1), SRD5A1(1), SRD5A2(1) 5464272 65 33 65 11 20 18 1 23 3 0 0.16 0.90 105 HSA04730_LONG_TERM_DEPRESSION Genes involved in long-term depression ARAF, BRAF, C7orf16, CACNA1A, CRH, CRHR1, GNA11, GNA12, GNA13, GNAI1, GNAI2, GNAI3, GNAO1, GNAQ, GNAS, GNAZ, GRIA1, GRIA2, GRIA3, GRID2, GRM1, GRM5, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, HRAS, IGF1, IGF1R, ITPR1, ITPR2, ITPR3, KRAS, LYN, MAP2K1, MAP2K2, MAPK1, MAPK3, NOS1, NOS2A, NOS3, NPR1, NPR2, NRAS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB1, PLCB2, PLCB3, PLCB4, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PRKCA, PRKCB1, PRKCG, PRKG1, PRKG2, RAF1, RYR1 69 ARAF(3), C7orf16(4), CACNA1A(8), CRHR1(1), GNA11(1), GNA12(2), GNA13(2), GNAI1(3), GNAO1(5), GNAQ(3), GNAS(6), GNAZ(1), GRIA2(10), GRIA3(5), GRID2(10), GRM1(9), GRM5(8), GUCY1A2(8), GUCY1B3(7), GUCY2C(7), GUCY2D(4), GUCY2F(7), IGF1(2), IGF1R(7), ITPR1(11), ITPR2(12), ITPR3(11), LYN(4), MAP2K1(3), MAPK1(2), MAPK3(2), NOS1(5), NOS3(2), NPR1(6), NPR2(9), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PPP2CA(1), PPP2R1A(4), PPP2R1B(1), PPP2R2A(1), PPP2R2B(1), PPP2R2C(3), PRKCA(2), PRKCG(8), PRKG1(4), PRKG2(3), RAF1(4), RYR1(19) 24859584 273 79 270 106 117 64 6 66 20 0 0.16 0.90 106 CDC42RACPATHWAY PI3 kinase stimulates cell migration by activating cdc42, which activates ARP2/3, which in turn promotes formation of new actin fibers. ACTR2, ACTR3, ARHA, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, CDC42, PAK1, PDGFRA, PIK3CA, PIK3R1, RAC1, WASL 13 ACTR2(1), ACTR3(2), ARPC1A(5), ARPC1B(2), ARPC2(1), PAK1(4), PDGFRA(13), PIK3R1(5), WASL(5) 2617466 38 18 38 11 9 8 2 10 8 1 0.16 0.90 107 BUTANOATE_METABOLISM AACS, ABAT, ACADS, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH5A1, ALDH9A1, BDH, BUCS1, ECHS1, EHHADH, GAD1, GAD2, HADHA, HMGCL, L2HGDH, OXCT1, PDHA1, PDHA2, PDHB, SDHB, SDS 27 AACS(3), ABAT(5), ACAT1(1), ACAT2(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH5A1(4), ALDH9A1(1), ECHS1(2), EHHADH(2), GAD1(7), GAD2(4), HADHA(2), L2HGDH(3), OXCT1(3), PDHA1(4), PDHA2(6), PDHB(2), SDHB(2), SDS(2) 6031565 82 36 82 14 31 20 0 25 6 0 0.16 0.90 108 FBW7PATHWAY Cyclin E interacts with cell cycle checkpoint kinase cdk2 to allow transcription of genes required for S phase, including transcription of additional cyclin E. CCNE1, CDC34, CDK2, CUL1, E2F1, FBXW7, RB1, SKP1A, TFDP1 7 CCNE1(3), CDK2(2), CUL1(7), RB1(4), TFDP1(4) 1592580 20 15 20 3 4 2 1 9 3 1 0.16 0.90 109 NUCLEOTIDE_GPCRS ADORA1, ADORA2A, ADORA2B, ADORA3, GPR23, LTB4R, P2RY1, P2RY2, P2RY5, P2RY6 8 ADORA1(5), ADORA2A(3), ADORA2B(1), ADORA3(3), P2RY1(3), P2RY2(2) 1317958 17 14 17 4 7 4 1 4 1 0 0.16 0.90 110 ST_MYOCYTE_AD_PATHWAY Cardiac myocytes have a variety of adrenergic receptors that induce subtype-specific signaling effects. ADRB1, AKT1, APC, ASAH1, BF, CAMP, CAV3, DAG1, DLG4, EPHB2, GAS, GNAI1, GNAQ, HTATIP, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, PITX2, PLB, PTX1, PTX3, RAC1, RHO, RYR1 22 ADRB1(2), AKT1(2), ASAH1(3), CAV3(2), DAG1(4), DLG4(2), EPHB2(7), GNAI1(3), GNAQ(3), ITPR1(11), ITPR2(12), ITPR3(11), KCNJ3(6), KCNJ5(3), KCNJ9(2), MAPK1(2), PITX2(2), PTX3(2), RHO(2), RYR1(19) 9580410 100 48 99 45 50 16 4 22 8 0 0.17 0.90 111 ST_G_ALPHA_S_PATHWAY The G-alpha-s protein activates adenylyl cyclases, which catalyze cAMP formation. ASAH1, BF, BFAR, BRAF, CAMP, CREB1, CREB3, CREB5, EPAC, GAS, GRF2, MAPK1, RAF1, SNX13, SRC, TERF2IP 11 ASAH1(3), BFAR(1), CREB1(1), CREB3(2), CREB5(2), MAPK1(2), RAF1(4), SNX13(6), SRC(3), TERF2IP(1) 2376475 25 16 24 11 7 8 0 5 5 0 0.17 0.90 112 CARM1PATHWAY The methyltransferase CARM1 interacts with transcription factors such as CBP/p300 and methylates histones H3 and H4. CARM1, CREB1, CREBBP, EP300, NCOA3, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RARA, RXRA 13 CARM1(2), CREB1(1), CREBBP(21), EP300(13), NCOA3(6), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), RXRA(1) 4756732 51 31 51 12 15 20 2 8 6 0 0.17 0.90 113 IGF1MTORPATHWAY Growth factor IGF-1 activates AKT, Gsk3-beta, and mTOR to promote muscle hypertrophy. AKT1, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF4E, EIF4EBP1, FRAP1, GSK3B, IGF1, IGF1R, INPPL1, PDK2, PDPK1, PIK3CA, PIK3R1, PPP2CA, PTEN, RPS6, RPS6KB1 17 AKT1(2), EIF2B5(5), EIF2S2(1), EIF2S3(1), GSK3B(7), IGF1(2), IGF1R(7), INPPL1(3), PDK2(1), PDPK1(1), PIK3R1(5), PPP2CA(1), RPS6KB1(3) 3913677 39 27 39 9 15 8 3 5 8 0 0.17 0.90 114 METHIONINE_METABOLISM AHCY, BHMT, CBS, CTH, DNMT1, DNMT2, DNMT3A, DNMT3B, MARS, MARS2, MAT1A, MAT2B, MTR 12 AHCY(3), BHMT(3), CBS(2), CTH(1), DNMT1(12), DNMT3A(7), DNMT3B(3), MARS(3), MAT1A(5), MAT2B(2), MTR(6) 4084244 47 29 44 10 23 8 1 8 7 0 0.17 0.90 115 ST_B_CELL_ANTIGEN_RECEPTOR B cell receptors bind antigens and promote B cell activation. AKT1, AKT2, AKT3, BAD, BCR, BLNK, BTK, CD19, CSK, DAG1, EPHB2, GRB2, ITPKA, ITPKB, LYN, MAP2K1, MAP2K2, MAPK1, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PAG, PI3, PIK3CA, PIK3CD, PIK3R1, PLCG2, PPP1R13B, RAF1, SERPINA4, SHC1, SOS1, SOS2, SYK, VAV1 38 AKT1(2), AKT2(5), BAD(1), BCR(6), BTK(6), CD19(3), CSK(1), DAG1(4), EPHB2(7), GRB2(2), ITPKB(4), LYN(4), MAP2K1(3), MAPK1(2), NFAT5(5), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PIK3CD(2), PIK3R1(5), PLCG2(9), PPP1R13B(5), RAF1(4), SERPINA4(2), SHC1(3), SOS1(5), SOS2(9), VAV1(11) 11656552 118 52 114 33 47 24 7 28 12 0 0.17 0.90 116 HSA00720_REDUCTIVE_CARBOXYLATE_CYCLE Genes involved in reductive carboxylate cycle (CO2 fixation) ACLY, ACO1, ACO2, ACSS1, ACSS2, FH, IDH1, IDH2, LOC441996, MDH1, MDH2, SUCLA2 11 ACLY(4), ACO1(3), ACO2(2), ACSS1(3), ACSS2(5), FH(1), IDH1(3), IDH2(7), MDH1(1), MDH2(1), SUCLA2(3) 3092911 33 23 33 6 15 7 0 8 3 0 0.17 0.90 117 SPRYPATHWAY Four members of the Sprouty protein family block proliferative EGF signals by binding Grb-2, preventing Ras and MAP kinase activation. CBL, EGF, EGFR, GRB2, HRAS, MAP2K1, MAPK1, MAPK3, PTPRB, RAF1, RASA1, SHC1, SOS1, SPRY1, SPRY2, SPRY3, SPRY4, SRC 17 CBL(2), EGF(3), EGFR(10), GRB2(2), MAP2K1(3), MAPK1(2), MAPK3(2), PTPRB(4), RAF1(4), RASA1(5), SHC1(3), SOS1(5), SPRY1(2), SPRY4(2), SRC(3) 5720814 52 31 50 19 17 15 4 12 4 0 0.18 0.92 118 HSA04310_WNT_SIGNALING_PATHWAY Genes involved in Wnt signaling pathway APC, APC2, AXIN1, AXIN2, BTRC, CACYBP, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CCND1, CCND2, CCND3, CER1, CHD8, CHP, CREBBP, CSNK1A1, CSNK1A1L, CSNK1E, CSNK2A1, CSNK2A2, CSNK2B, CTBP1, CTBP2, CTNNB1, CTNNBIP1, CUL1, CXXC4, DAAM1, DAAM2, DKK1, DKK2, DKK4, DVL1, DVL2, DVL3, EP300, FBXW11, FOSL1, FRAT1, FRAT2, FZD1, FZD10, FZD2, FZD3, FZD4, FZD5, FZD6, FZD7, FZD8, FZD9, GSK3B, JUN, LEF1, LOC652788, LRP5, LRP6, MAP3K7, MAPK10, MAPK8, MAPK9, MMP7, MYC, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NKD1, NKD2, NLK, PLCB1, PLCB2, PLCB3, PLCB4, PORCN, PPARD, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRICKLE1, PRICKLE2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PSEN1, RAC1, RAC2, RAC3, RBX1, RHOA, ROCK1, ROCK2, RUVBL1, SENP2, SFRP1, SFRP2, SFRP4, SFRP5, SIAH1, SKP1, SMAD2, SMAD3, SMAD4, SOX17, TBL1X, TBL1XR1, TBL1Y, TCF7, TCF7L1, TCF7L2, TP53, VANGL1, VANGL2, WIF1, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B 137 APC2(1), AXIN1(1), AXIN2(7), BTRC(2), CACYBP(1), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CCND2(1), CCND3(1), CER1(3), CHD8(4), CREBBP(21), CSNK1A1(2), CSNK1A1L(5), CSNK2A1(4), CSNK2A2(2), CSNK2B(2), CTBP1(1), CTBP2(2), CTNNB1(8), CTNNBIP1(1), CUL1(7), CXXC4(1), DAAM1(1), DAAM2(5), DKK1(3), DKK4(4), DVL2(8), DVL3(2), EP300(13), FBXW11(7), FZD10(4), FZD2(2), FZD3(10), FZD4(1), FZD6(3), FZD7(3), FZD8(1), GSK3B(7), LEF1(4), LRP5(5), LRP6(10), MAP3K7(2), MAPK10(4), MAPK8(2), MAPK9(3), MMP7(3), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NKD1(3), NKD2(1), NLK(1), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PORCN(2), PPARD(1), PPP2CA(1), PPP2R1A(4), PPP2R1B(1), PPP2R2A(1), PPP2R2B(1), PPP2R2C(3), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRICKLE1(8), PRICKLE2(5), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKX(2), PSEN1(3), ROCK1(8), ROCK2(2), RUVBL1(6), SENP2(2), SFRP1(2), SFRP2(1), SFRP4(3), SFRP5(1), SIAH1(1), SKP1(1), SMAD3(6), SOX17(2), TBL1X(5), TBL1XR1(6), TCF7(3), TCF7L1(3), VANGL1(2), VANGL2(5), WIF1(2), WNT1(1), WNT10B(3), WNT11(3), WNT16(2), WNT2B(1), WNT3(4), WNT3A(1), WNT4(1), WNT5A(3), WNT7A(2), WNT7B(2), WNT8A(1), WNT9A(2), WNT9B(1) 35157650 379 89 375 110 153 83 6 93 44 0 0.18 0.93 119 HSA00533_KERATAN_SULFATE_BIOSYNTHESIS Genes involved in keratan sulfate biosynthesis B3GNT1, B3GNT2, B3GNT7, B4GALT1, B4GALT2, B4GALT3, B4GALT4, CHST1, CHST2, CHST4, CHST6, FUT8, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4 16 B3GNT1(2), B3GNT2(1), B3GNT7(4), B4GALT1(5), B4GALT2(3), B4GALT3(6), CHST1(6), CHST2(1), CHST4(5), FUT8(1), ST3GAL1(1), ST3GAL2(1), ST3GAL3(4), ST3GAL4(2) 2809788 42 27 42 12 25 7 0 7 3 0 0.19 0.96 120 CARDIACEGFPATHWAY Cardiac hypertrophy, a response to high blood pressure, is stimulated by GPCR ligands such as angiotensin II that activate the EGF pathway. ADAM12, AGT, AGTR2, ARHA, EDN1, EDNRA, EDNRB, EGF, EGFR, FOS, HRAS, JUN, MYC, NFKB1, PLCG1, PRKCA, PRKCB1, RELA 16 ADAM12(6), AGT(4), AGTR2(4), EDN1(1), EDNRA(4), EDNRB(7), EGF(3), EGFR(10), NFKB1(3), PLCG1(4), PRKCA(2), RELA(2) 4792058 50 31 50 16 22 9 0 14 5 0 0.19 0.96 121 SA_B_CELL_RECEPTOR_COMPLEXES Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. ATF2, BCR, BLNK, ELK1, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP3K1, MAPK1, MAPK3, MAPK8IP3, PAPPA, RAC1, RPS6KA1, RPS6KA3, SHC1, SOS1, SYK, VAV1, VAV2, VAV3 24 BCR(6), GRB2(2), LYN(4), MAP2K1(3), MAP3K1(6), MAPK1(2), MAPK3(2), MAPK8IP3(1), PAPPA(13), RPS6KA1(1), RPS6KA3(3), SHC1(3), SOS1(5), VAV1(11), VAV2(2), VAV3(10) 7423650 74 38 72 20 30 13 5 20 6 0 0.19 0.99 122 CDK5PATHWAY Cdk5, a regulatory kinase implicated in neuronal development, represses Mek1, which downregulates the MAP kinase pathway. CDK5, CDK5R1, DPM2, EGR1, HRAS, KLK2, MAP2K1, MAP2K2, MAPK1, MAPK3, NGFB, NGFR, RAF1 11 CDK5R1(1), EGR1(2), MAP2K1(3), MAPK1(2), MAPK3(2), NGFR(2), RAF1(4) 1787538 16 14 15 5 6 3 2 2 3 0 0.20 0.99 123 HSA04612_ANTIGEN_PROCESSING_AND_PRESENTATION Genes involved in antigen processing and presentation B2M, CALR, CANX, CD4, CD74, CD8A, CD8B, CIITA, CREB1, CTSB, CTSL1, CTSS, HLA-A, HLA-A29.1, HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, HLA-E, HLA-F, HLA-G, HSP90AA1, HSP90AB1, HSPA5, IFI30, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, KIR2DL1, KIR2DL2, KIR2DL3, KIR2DL4, KIR2DL5A, KIR2DS1, KIR2DS2, KIR2DS3, KIR2DS4, KIR2DS5, KIR3DL1, KIR3DL2, KIR3DL3, KLRC1, KLRC2, KLRC3, KLRC4, KLRD1, LGMN, LTA, NFYA, NFYB, NFYC, PDIA3, PSME1, PSME2, RFX5, RFXANK, RFXAP, TAP1, TAP2, TAPBP 73 B2M(3), CANX(2), CD4(2), CD74(1), CD8B(2), CIITA(6), CREB1(1), CTSB(2), CTSL1(3), CTSS(2), HLA-A(1), HLA-B(3), HLA-C(2), HLA-DMA(2), HLA-DOB(1), HLA-DPA1(1), HLA-DPB1(1), HLA-DQA1(1), HLA-DQA2(1), HLA-DRA(4), HLA-DRB1(1), HLA-E(1), HLA-F(1), HLA-G(1), HSP90AA1(2), HSP90AB1(1), IFI30(1), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), KIR2DL1(2), KIR2DL3(1), KIR2DL4(2), KIR3DL1(3), KIR3DL2(3), KIR3DL3(4), KLRC3(2), KLRC4(1), KLRD1(1), LGMN(1), NFYA(1), NFYB(1), NFYC(3), PDIA3(1), RFX5(1), RFXAP(1), TAP1(3), TAP2(4), TAPBP(3) 10417158 107 41 104 30 21 27 5 32 17 5 0.20 0.99 124 SPPAPATHWAY Thrombin cleaves protease-activated receptors PAR1 and PAR4 to induce calcium influx and activate platelet aggregation, a process inhibited by aspirin. F2, F2R, F2RL3, GNAI1, GNB1, GNGT1, HRAS, ITGA1, ITGB1, MAP2K1, MAPK1, MAPK3, PLA2G4A, PLCB1, PRKCA, PRKCB1, PTGS1, PTK2, RAF1, SRC, SYK, TBXAS1 21 F2(2), GNAI1(3), GNB1(1), ITGA1(3), ITGB1(6), MAP2K1(3), MAPK1(2), MAPK3(2), PLA2G4A(5), PLCB1(8), PRKCA(2), PTGS1(4), PTK2(5), RAF1(4), SRC(3), TBXAS1(5) 5694968 58 32 57 17 23 13 2 17 3 0 0.20 0.99 125 BLYMPHOCYTEPATHWAY B cells express the major histocompatibility complex (class II MHC), immunoglobulins, adhesion proteins, and other factors on their cell surface. CD80, CR1, CR2, FCGR2B, HLA-DRA, HLA-DRB1, ICAM1, ITGAL, ITGB2, PTPRC, TNFRSF5 10 CR1(7), CR2(9), HLA-DRA(4), HLA-DRB1(1), ICAM1(2), ITGAL(5), ITGB2(4), PTPRC(9) 3516085 41 24 41 10 11 14 0 9 5 2 0.21 0.99 126 EXTRINSICPATHWAY The extrinsic prothrombin activation pathway requires the release of thromboplastin from damaged tissues to activate the blood clotting cascade. F10, F2, F2R, F3, F5, F7, FGA, FGB, FGG, PROC, PROS1, SERPINC1, TFPI 13 F10(1), F2(2), F3(1), F5(14), F7(2), FGA(11), FGB(1), FGG(4), PROC(1), PROS1(3), SERPINC1(3) 3779046 43 24 43 10 9 11 1 18 4 0 0.21 0.99 127 CELLCYCLEPATHWAY Cyclins interact with cyclin-dependent kinases to form active kinase complexes that regulate progression through the cell cycle. CCNA1, CCNB1, CCND1, CCND2, CCND3, CCNE1, CCNH, CDC2, CDC25A, CDK2, CDK4, CDK6, CDK7, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CDKN2D, E2F1, RB1, RBL1, TFDP1 22 CCNA1(4), CCNB1(2), CCND2(1), CCND3(1), CCNE1(3), CCNH(2), CDC25A(2), CDK2(2), CDK4(2), CDK6(1), CDK7(1), CDKN1A(1), CDKN1B(1), CDKN2A(1), CDKN2C(1), RB1(4), RBL1(3), TFDP1(4) 3717340 36 26 36 9 11 7 1 13 3 1 0.22 0.99 128 HSA01430_CELL_COMMUNICATION Genes involved in cell communication ACTB, ACTG1, CHAD, COL11A1, COL11A2, COL17A1, COL1A1, COL1A2, COL2A1, COL3A1, COL4A1, COL4A2, COL4A4, COL4A6, COL5A1, COL5A2, COL5A3, COL6A1, COL6A2, COL6A3, COL6A6, COMP, DES, DSC1, DSC2, DSC3, DSG1, DSG2, DSG3, DSG4, FN1, GJA1, GJA10, GJA3, GJA4, GJA5, GJA8, GJA9, GJB1, GJB2, GJB3, GJB4, GJB5, GJB6, GJB7, GJC1, GJC2, GJC3, GJD2, GJD3, GJD4, IBSP, INA, ITGA6, ITGB4, KRT1, KRT10, KRT12, KRT13, KRT14, KRT15, KRT16, KRT17, KRT18, KRT19, KRT2, KRT20, KRT23, KRT24, KRT25, KRT27, KRT28, KRT3, KRT31, KRT32, KRT33A, KRT33B, KRT34, KRT35, KRT36, KRT37, KRT38, KRT39, KRT4, KRT40, KRT5, KRT6A, KRT6B, KRT6C, KRT7, KRT71, KRT72, KRT73, KRT74, KRT75, KRT76, KRT77, KRT78, KRT79, KRT8, KRT81, KRT82, KRT83, KRT84, KRT85, KRT86, KRT9, LAMA1, LAMA2, LAMA3, LAMA4, LAMA5, LAMB1, LAMB2, LAMB3, LAMB4, LAMC1, LAMC2, LAMC3, LMNA, LMNB1, LMNB2, LOC728760, NES, PRPH, RELN, SPP1, THBS1, THBS2, THBS3, THBS4, TNC, TNN, TNR, TNXB, VIM, VTN, VWF 136 ACTB(2), CHAD(6), COL11A1(18), COL11A2(10), COL17A1(6), COL1A1(11), COL1A2(16), COL2A1(8), COL3A1(10), COL4A1(12), COL4A2(3), COL4A4(8), COL4A6(15), COL5A1(13), COL5A2(10), COL5A3(5), COL6A6(15), COMP(2), DES(1), DSC1(7), DSC2(2), DSC3(3), DSG1(6), DSG2(5), DSG3(8), DSG4(5), FN1(17), GJA1(3), GJA10(5), GJA4(2), GJA5(3), GJA8(4), GJA9(3), GJB1(3), GJB3(3), GJB4(1), GJB7(1), GJC1(4), GJC2(1), GJC3(1), GJD4(2), IBSP(3), INA(2), ITGA6(3), ITGB4(2), KRT1(3), KRT10(2), KRT12(1), KRT13(4), KRT15(1), KRT16(2), KRT17(2), KRT18(2), KRT19(2), KRT2(1), KRT23(1), KRT24(1), KRT25(3), KRT27(1), KRT28(1), KRT3(5), KRT31(4), KRT32(1), KRT33A(2), KRT33B(4), KRT34(4), KRT35(1), KRT36(2), KRT37(3), KRT4(2), KRT5(3), KRT6A(3), KRT6B(2), KRT6C(2), KRT7(1), KRT71(3), KRT72(5), KRT73(2), KRT74(2), KRT75(5), KRT76(2), KRT77(1), KRT78(3), KRT79(2), KRT8(1), KRT81(1), KRT82(4), KRT83(1), KRT84(5), KRT85(5), KRT9(4), LAMA1(22), LAMA2(22), LAMA3(12), LAMA4(9), LAMB1(8), LAMB2(2), LAMB3(9), LAMB4(12), LAMC1(7), LAMC2(7), LAMC3(6), LMNB1(2), LMNB2(1), NES(6), PRPH(1), RELN(24), SPP1(1), THBS1(8), THBS2(10), THBS3(2), THBS4(1), TNC(13), TNN(15), TNR(19), TNXB(14), VIM(2), VTN(3), VWF(10) 56175405 630 114 627 234 244 149 9 171 57 0 0.22 0.99 129 TYROSINE_METABOLISM ABP1, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, AOX1, COMT, DBH, DCT, DDC, FAH, GOT1, GOT2, GSTZ1, HGD, HPD, MAOA, MAOB, PNMT, TAT, TH, TPO, TYR 32 ABP1(1), ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A3(4), ALDH3A1(2), ALDH3B1(2), ALDH3B2(1), AOC2(4), AOC3(4), AOX1(5), DBH(4), DCT(9), DDC(1), FAH(1), GOT1(5), GOT2(1), GSTZ1(2), HGD(1), HPD(3), MAOA(2), TAT(3), TPO(8), TYR(2) 7247127 84 40 83 35 35 19 2 25 3 0 0.22 0.99 130 ALANINE_AND_ASPARTATE_METABOLISM AARS, ABAT, ADSL, ADSS, AGXT, AGXT2, ASL, ASNS, ASPA, ASS, CAD, CRAT, DARS, DDO, GAD1, GAD2, GOT1, GOT2, GPT, GPT2, NARS, PC 21 AARS(4), ABAT(5), ADSL(7), ADSS(1), AGXT2(5), ASNS(1), ASPA(3), CAD(10), CRAT(3), DARS(3), DDO(2), GAD1(7), GAD2(4), GOT1(5), GOT2(1), GPT2(2), NARS(2), PC(3) 6093410 68 38 68 18 31 16 0 17 4 0 0.22 0.99 131 KERATAN_SULFATE_BIOSYNTHESIS B3GNT1, B4GALT1, B4GALT2, B4GALT3, B4GALT5, FUT8, SIAT4A, SIAT4B, SIAT6, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4 10 B3GNT1(2), B4GALT1(5), B4GALT2(3), B4GALT3(6), B4GALT5(2), FUT8(1), ST3GAL1(1), ST3GAL2(1), ST3GAL3(4), ST3GAL4(2) 1834737 27 19 27 4 14 6 0 5 2 0 0.23 0.99 132 HSA00940_PHENYLPROPANOID_BIOSYNTHESIS Genes involved in phenylpropanoid biosynthesis EPX, GBA, GBA3, LPO, MPO, PRDX6, TPO 7 EPX(6), GBA3(3), LPO(2), MPO(3), PRDX6(2), TPO(8) 1985837 24 20 23 10 13 3 0 4 4 0 0.23 0.99 133 CLASSICPATHWAY The classic complement pathway is initiated by antibodies and promotes phagocytosis and lysis of foreign cells as well as activating the inflammatory response. C1QA, C1QB, C1QG, C1R, C1S, C2, C3, C4A, C4B, C5, C6, C7, C8A, C9 11 C1QB(1), C1R(2), C1S(3), C3(10), C5(9), C6(10), C7(2), C8A(3), C9(4) 4126764 44 23 44 15 14 9 0 13 7 1 0.23 0.99 134 PTENPATHWAY PTEN suppresses AKT-induced cell proliferation and antagonizes the action of PI3K. AKT1, BCAR1, CDKN1B, FOXO3A, GRB2, ILK, ITGB1, MAPK1, MAPK3, PDK2, PDPK1, PIK3CA, PIK3R1, PTEN, PTK2, SHC1, SOS1, TNFSF6 14 AKT1(2), CDKN1B(1), GRB2(2), ITGB1(6), MAPK1(2), MAPK3(2), PDK2(1), PDPK1(1), PIK3R1(5), PTK2(5), SHC1(3), SOS1(5) 3802176 35 24 34 10 6 9 3 10 7 0 0.23 0.99 135 CARBON_FIXATION ALDOA, ALDOB, ALDOC, FBP1, FBP2, GOT1, GOT2, GPT, GPT2, MDH1, MDH2, ME1, ME2, ME3, PGK1, PKLR, PKM2, RPE, RPE, LOC440001, RPIA, TKT, TPI1 21 ALDOA(1), ALDOB(5), ALDOC(1), FBP2(2), GOT1(5), GOT2(1), GPT2(2), MDH1(1), MDH2(1), ME1(7), ME2(3), ME3(4), PGK1(3), PKM2(2), RPE(2), RPIA(3), TKT(3), TPI1(1) 4107271 47 29 47 10 14 8 1 19 5 0 0.23 0.99 136 HSA00300_LYSINE_BIOSYNTHESIS Genes involved in lysine biosynthesis AADAT, AASDHPPT, AASS, KARS 4 AADAT(1), AASDHPPT(2), AASS(7), KARS(3) 1104643 13 10 13 2 4 2 0 5 2 0 0.23 0.99 137 LEPTINPATHWAY Leptin is a peptide secreted by adipose tissue that, in skeletal muscle, promotes fatty acid oxidation, decreases cells' lipid content, and promotes insulin sensitivity. ACACA, CPT1A, LEP, LEPR, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKAG1, PRKAG2 10 ACACA(14), CPT1A(5), LEP(1), LEPR(5), PRKAA1(2), PRKAA2(6), PRKAB1(1), PRKAB2(1), PRKAG1(1), PRKAG2(2) 3384364 38 23 38 13 13 8 0 12 5 0 0.24 0.99 138 STILBENE_COUMARINE_AND_LIGNIN_BIOSYNTHESIS EPX, GBA3, LPO, MPO, PRDX1, PRDX2, PRDX5, PRDX6, TPO, TYR 10 EPX(6), GBA3(3), LPO(2), MPO(3), PRDX6(2), TPO(8), TYR(2) 2274521 26 21 25 11 13 3 0 6 4 0 0.24 0.99 139 HSA00710_CARBON_FIXATION Genes involved in carbon fixation ALDOA, ALDOB, ALDOC, FBP1, FBP2, GOT1, GOT2, GPT, GPT2, MDH1, MDH2, ME1, ME3, PGK1, PGK2, PKLR, PKM2, RPE, RPIA, TKT, TKTL1, TKTL2, TPI1 23 ALDOA(1), ALDOB(5), ALDOC(1), FBP2(2), GOT1(5), GOT2(1), GPT2(2), MDH1(1), MDH2(1), ME1(7), ME3(4), PGK1(3), PGK2(6), PKM2(2), RPE(2), RPIA(3), TKT(3), TKTL1(4), TKTL2(5), TPI1(1) 4597451 59 32 59 14 19 11 0 23 6 0 0.24 0.99 140 MALATEXPATHWAY The tricarboxylate transfer pathway shuttles acetyl groups of acetyl-CoA between mitochondria and the cytoplasm. ACLY, CS, MDH1, ME1, PC, PDHA1, SLC25A1, SLC25A11 8 ACLY(4), MDH1(1), ME1(7), PC(3), PDHA1(4), SLC25A11(1) 2161140 20 19 20 5 8 5 0 3 4 0 0.24 0.99 141 PLCDPATHWAY Phospholipase C (PLC-d1) hydrolyzes the membrane lipid PIP2 to DAG and IP3, which induce calcium influx and activates protein kinase C. ADRA1B, PLCD1, PRKCA, PRKCB1, TGM2 4 ADRA1B(4), PLCD1(6), PRKCA(2), TGM2(4) 1177758 16 11 16 4 6 2 1 6 1 0 0.24 0.99 142 SA_TRKA_RECEPTOR The TrkA receptor binds nerve growth factor to activate MAP kinase pathways and promote cell growth. AKT1, AKT2, AKT3, ARHA, CDKN1A, ELK1, GRB2, HRAS, MAP2K1, MAP2K2, NGFB, NGFR, NTRK1, PIK3CA, PIK3CD, SHC1, SOS1 14 AKT1(2), AKT2(5), CDKN1A(1), GRB2(2), MAP2K1(3), NGFR(2), NTRK1(6), PIK3CD(2), SHC1(3), SOS1(5) 3308155 31 23 30 10 9 5 5 8 4 0 0.24 0.99 143 HSA00602_GLYCOSPHINGOLIPID_BIOSYNTHESIS_NEO_LACTOSERIES Genes involved in glycosphingolipid biosynthesis - neo-lactoseries ABO, B3GNT1, B3GNT2, B3GNT3, B3GNT4, B3GNT5, B4GALT1, B4GALT2, B4GALT3, B4GALT4, FUT1, FUT2, FUT3, FUT4, FUT5, FUT6, FUT7, FUT9, GCNT2, ST3GAL6, ST8SIA1 21 ABO(2), B3GNT1(2), B3GNT2(1), B3GNT4(1), B3GNT5(1), B4GALT1(5), B4GALT2(3), B4GALT3(6), FUT1(1), FUT2(1), FUT3(3), FUT6(1), FUT9(4), GCNT2(9), ST3GAL6(4), ST8SIA1(3) 3619665 47 27 47 10 20 8 2 13 4 0 0.24 0.99 144 HSA00624_1_AND_2_METHYLNAPHTHALENE_DEGRADATION Genes involved in 1- and 2-methylnaphthalene degradation ACAD8, ACAD9, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ARD1A, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ESCO1, ESCO2, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1 21 ACAD9(3), ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), DHRS1(1), DHRS2(2), DHRS3(2), ESCO1(7), ESCO2(3), MYST3(13), MYST4(5), PNPLA3(4), SH3GLB1(3) 5686988 63 31 63 22 22 16 3 18 4 0 0.25 0.99 145 HSA04140_REGULATION_OF_AUTOPHAGY Genes involved in regulation of autophagy ATG12, ATG3, ATG5, ATG7, BECN1, GABARAP, GABARAPL1, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNG, INS, LOC441925, PIK3C3, PIK3R4, PRKAA1, PRKAA2, ULK1, ULK2, ULK3 29 ATG5(3), ATG7(1), BECN1(2), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), IFNG(1), PIK3C3(5), PIK3R4(12), PRKAA1(2), PRKAA2(6), ULK2(4), ULK3(3) 4875214 59 28 59 14 11 17 2 26 3 0 0.25 0.99 146 CREBPATHWAY CREB is a transcription factor that binds to cAMP-responsive elements (CREs) to activate transcription in response to extracellular signaling. ADCY1, AKT1, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CREB1, GNAS, GRB2, HRAS, MAPK1, MAPK14, MAPK3, PIK3CA, PIK3R1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, RAC1, RPS6KA1, RPS6KA5, SOS1 25 ADCY1(4), AKT1(2), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CREB1(1), GNAS(6), GRB2(2), MAPK1(2), MAPK14(3), MAPK3(2), PIK3R1(5), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), RPS6KA1(1), RPS6KA5(3), SOS1(5) 6234947 52 32 52 20 17 9 6 16 4 0 0.25 0.99 147 ACHPATHWAY Nicotinic acetylcholine receptors are ligand-gated ion channels that primarily mediate neuromuscular signaling and may inhibit neuronal apoptosis via the AKT pathway. AKT1, BAD, CHRNB1, CHRNG, FOXO3A, MUSK, PIK3CA, PIK3R1, PTK2, PTK2B, RAPSN, SRC, TERT, TNFSF6, YWHAH 12 AKT1(2), BAD(1), CHRNB1(3), CHRNG(2), MUSK(2), PIK3R1(5), PTK2(5), PTK2B(1), RAPSN(2), SRC(3), TERT(2) 3390730 28 23 28 14 9 6 1 3 9 0 0.26 0.99 148 HSA03022_BASAL_TRANSCRIPTION_FACTORS Genes involved in basal transcription factors GTF2A1, GTF2A1L, GTF2A2, GTF2B, GTF2E1, GTF2E2, GTF2F1, GTF2F2, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2I, GTF2IRD1, LOC391764, STON1, TAF1, TAF10, TAF12, TAF13, TAF1L, TAF2, TAF4, TAF4B, TAF5, TAF5L, TAF6, TAF6L, TAF7, TAF7L, TAF9, TAF9B, TBPL1, TBPL2 33 GTF2A1(2), GTF2B(1), GTF2E1(5), GTF2F1(3), GTF2H1(2), GTF2H3(4), GTF2H4(1), GTF2IRD1(8), TAF1(7), TAF1L(16), TAF2(6), TAF4(4), TAF4B(4), TAF5(3), TAF5L(1), TAF6(2), TAF6L(2), TAF7(1), TAF7L(3), TAF9B(1), TBPL1(1), TBPL2(1) 8384480 78 41 78 21 30 17 1 24 6 0 0.26 0.99 149 HSA00272_CYSTEINE_METABOLISM Genes involved in cysteine metabolism CARS, CARS2, CDO1, CTH, GOT1, GOT2, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, MPST, SDS, SULT1B1, SULT1C2, SULT1C4, SULT4A1 16 CARS(5), CARS2(1), CDO1(1), CTH(1), GOT1(5), GOT2(1), LDHA(1), LDHAL6A(2), LDHAL6B(1), LDHB(1), LDHC(2), SDS(2), SULT1B1(3), SULT1C2(1), SULT4A1(1) 2773955 28 19 28 3 11 7 1 6 3 0 0.26 0.99 150 IL3PATHWAY IL-3 promotes proliferation and differentiation of hematopoietic cells via a heterodimeric receptor that activates the Stat5 and MAP kinase pathways. CSF2RB, FOS, GRB2, HRAS, IL3, IL3RA, JAK2, MAP2K1, MAPK3, PTPN6, RAF1, SHC1, SOS1, STAT5A, STAT5B 14 CSF2RB(7), GRB2(2), IL3(3), JAK2(6), MAP2K1(3), MAPK3(2), PTPN6(4), RAF1(4), SHC1(3), SOS1(5), STAT5B(2) 3962484 41 24 38 9 17 7 4 8 4 1 0.26 0.99 151 HSA00232_CAFFEINE_METABOLISM Genes involved in caffeine metabolism CYP1A2, CYP2A13, CYP2A6, CYP2A7, NAT1, NAT2, XDH 7 CYP1A2(2), CYP2A13(6), CYP2A6(3), CYP2A7(5), XDH(7) 1858404 23 15 23 9 6 7 1 6 3 0 0.26 0.99 152 STEMPATHWAY In the absence of infection, bone marrow stromal cells release hematopoietic cytokines; activated macrophages and Th cells induce hematopoiesis during infection. CD4, CD8A, CSF1, CSF2, CSF3, EPO, IL11, IL2, IL3, IL4, IL5, IL6, IL7, IL8, IL9 15 CD4(2), CSF1(1), IL11(1), IL2(3), IL3(3), IL4(3), IL6(1), IL7(1), IL9(1) 1462331 16 12 15 4 7 3 0 5 1 0 0.26 0.99 153 NUCLEOTIDE_SUGARS_METABOLISM GALE, GALT, TGDS, UGDH, UXS1 5 GALE(1), GALT(2), UGDH(3), UXS1(6) 939318 12 10 12 4 5 3 0 3 1 0 0.26 0.99 154 GSPATHWAY Activated G-protein coupled receptors stimulate cAMP production and thus activate protein kinase A, involved in a number of signal transduction pathways. ADCY1, GNAS, GNB1, GNGT1, PRKACA, PRKAR1A 6 ADCY1(4), GNAS(6), GNB1(1), PRKAR1A(1) 1505719 12 12 12 8 5 3 1 3 0 0 0.26 0.99 155 PHENYLALANINE_TYROSINE_AND_TRYPTOPHAN_BIOSYNTHESIS ENO1, ENO2, ENO3, FARS2, FARSLB, GOT1, GOT2, PAH, TAT, YARS 9 ENO2(3), ENO3(3), FARS2(4), GOT1(5), GOT2(1), PAH(4), TAT(3), YARS(2) 1924762 25 17 25 5 8 8 0 6 3 0 0.27 0.99 156 WNT_SIGNALING Wnt signaling genes APC, ARHA, AXIN1, C2orf31, CCND1, CCND2, CCND3, CSNK1E, CSNK1E, LOC400927, CTNNB1, DIPA, DVL1, DVL2, DVL3, FBXW2, FOSL1, FRAT1, FZD1, FZD10, FZD2, FZD3, FZD5, FZD6, FZD7, FZD8, FZD9, GSK3B, JUN, LDLR, MAPK10, MAPK9, MYC, PAFAH1B1, PLAU, PPP2R5C, PPP2R5E, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCM, PRKCQ, PRKCZ, PRKD1, RAC1, RHOA, SFRP4, TCF7, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B 56 AXIN1(1), CCND2(1), CCND3(1), CTNNB1(8), DVL2(8), DVL3(2), FBXW2(2), FZD10(4), FZD2(2), FZD3(10), FZD6(3), FZD7(3), FZD8(1), GSK3B(7), LDLR(4), MAPK10(4), MAPK9(3), PAFAH1B1(3), PLAU(2), PPP2R5C(2), PPP2R5E(2), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCI(4), PRKCQ(4), PRKD1(10), SFRP4(3), TCF7(3), WNT1(1), WNT10B(3), WNT11(3), WNT16(2), WNT2B(1), WNT3(4), WNT4(1), WNT5A(3), WNT7A(2), WNT7B(2) 12338700 138 57 136 44 62 27 1 34 14 0 0.27 0.99 157 CBLPATHWAY Activated EGF receptors undergo endocytosis into clathrin-coated vesicles, where they are recycled to the membrane or ubiquitinated by Cbl. CBL, CSF1R, EGF, EGFR, GRB2, MET, PDGFRA, PRKCA, PRKCB1, SH3GLB1, SH3GLB2, SH3KBP1, SRC 12 CBL(2), CSF1R(3), EGF(3), EGFR(10), GRB2(2), MET(4), PDGFRA(13), PRKCA(2), SH3GLB1(3), SH3GLB2(2), SH3KBP1(4), SRC(3) 4549303 51 25 51 25 14 12 3 17 4 1 0.27 0.99 158 FOSBPATHWAY FOSB gene expression and drug abuse CDK5, FOSB, GRIA2, JUND, PPP1R1B 5 FOSB(2), GRIA2(10), PPP1R1B(1) 887324 13 11 13 3 6 3 0 3 1 0 0.27 0.99 159 HSA00472_D_ARGININE_AND_D_ORNITHINE_METABOLISM Genes involved in D-arginine and D-ornithine metabolism DAO 1 DAO(2) 168020 2 2 2 0 1 0 0 0 1 0 0.28 0.99 160 ACETAMINOPHENPATHWAY Acetaminophen selectively inhibits Cox-3, which is localized to the brain, and yields the toxic metabolite NAPQI when processed by CAR in the liver. CYP1A2, CYP2E1, CYP3A, NR1I3, PTGS1, PTGS2 5 CYP1A2(2), CYP2E1(5), NR1I3(2), PTGS1(4), PTGS2(2) 1229609 15 12 15 2 7 4 0 4 0 0 0.28 0.99 161 SA_DIACYLGLYCEROL_SIGNALING DAG (diacylglycerol) signaling activity ESR1, ESR2, ITPKA, PDE1A, PDE1B, PLCB1, PLCB2, PRL, TRH, VIP 10 ESR1(12), ESR2(2), PDE1A(3), PDE1B(2), PLCB1(8), PLCB2(3), PRL(2), TRH(1) 2608397 33 20 33 8 13 9 0 7 4 0 0.28 0.99 162 CFTRPATHWAY The cAMP-regulated chloride channel CFTR (deficient in cystic fibrosis) is regulated by the surface-localized beta-adrenergic receptor. ADCY1, ADRB2, CFTR, GNAS, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, SLC9A3R1, VIL2 11 ADCY1(4), CFTR(8), GNAS(6), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), SLC9A3R1(3) 2969336 28 23 28 10 10 4 1 10 3 0 0.28 0.99 163 NKTPATHWAY T cell differentiation into Th1 and Th2 cells occurs by differential chemokine receptor expression, which mediates tissue localization and immune response. CCL3, CCL4, CCR1, CCR2, CCR3, CCR4, CCR5, CCR7, CD28, CD4, CSF2, CXCR3, CXCR4, IFNG, IFNGR1, IFNGR2, IL12A, IL12B, IL12RB1, IL12RB2, IL18R1, IL2, IL4, IL4R, IL5, TGFB1, TGFB2, TGFB3, TNFSF5 27 CCR1(5), CCR3(3), CCR5(1), CCR7(1), CD28(1), CD4(2), CXCR4(3), IFNG(1), IFNGR1(2), IFNGR2(1), IL12B(2), IL12RB1(2), IL12RB2(5), IL2(3), IL4(3), IL4R(1), TGFB1(1), TGFB2(5) 4276987 42 25 43 25 11 14 0 13 4 0 0.28 0.99 164 HSA00680_METHANE_METABOLISM Genes involved in methane metabolism ADH5, CAT, EPX, LPO, MPO, MTHFR, PRDX6, SHMT1, SHMT2, TPO 10 ADH5(1), CAT(2), EPX(6), LPO(2), MPO(3), MTHFR(6), PRDX6(2), SHMT1(1), SHMT2(2), TPO(8) 2728789 33 23 32 10 18 5 0 7 3 0 0.28 0.99 165 PPARGPATHWAY PPAR-gamma is a nuclear hormone receptor that is activated by fatty acids and regulates transcription through co-activations like Src-1 and Tif2. CREBBP, EP300, LPL, NCOA1, NCOA2, PPARBP, PPARG, PPARGC1, RXRA 7 CREBBP(21), EP300(13), LPL(6), NCOA1(6), NCOA2(4), PPARG(1), RXRA(1) 4305522 52 26 52 18 13 20 3 9 7 0 0.28 0.99 166 HSA04640_HEMATOPOIETIC_CELL_LINEAGE Genes involved in hematopoietic cell lineage ANPEP, CD14, CD19, CD1A, CD1B, CD1C, CD1D, CD1E, CD2, CD22, CD24, CD33, CD34, CD36, CD37, CD38, CD3D, CD3E, CD3G, CD4, CD44, CD5, CD55, CD59, CD7, CD8A, CD8B, CD9, CR1, CR2, CSF1, CSF1R, CSF2, CSF2RA, CSF3, CSF3R, DNTT, EPO, EPOR, FCER2, FCGR1A, FLT3, FLT3LG, GP1BA, GP1BB, GP5, GP9, GYPA, HLA-DRA, HLA-DRB1, HLA-DRB3, HLA-DRB4, HLA-DRB5, IL11, IL11RA, IL1A, IL1B, IL1R1, IL1R2, IL2RA, IL3, IL3RA, IL4, IL4R, IL5, IL5RA, IL6, IL6R, IL7, IL7R, IL9R, ITGA1, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGAM, ITGB3, KIT, KITLG, MME, MS4A1, TFRC, THPO, TNF, TPO 81 ANPEP(5), CD14(1), CD19(3), CD1A(2), CD1D(1), CD1E(5), CD2(3), CD22(8), CD33(1), CD34(1), CD36(1), CD37(2), CD38(1), CD3D(1), CD3G(2), CD4(2), CD44(3), CD5(2), CD55(3), CD7(1), CD8B(2), CD9(1), CR1(7), CR2(9), CSF1(1), CSF1R(3), CSF3R(9), DNTT(5), FCER2(1), FCGR1A(1), FLT3(3), FLT3LG(1), GP1BA(1), GP5(5), GYPA(1), HLA-DRA(4), HLA-DRB1(1), IL11(1), IL11RA(1), IL1A(1), IL1R1(3), IL1R2(3), IL2RA(2), IL3(3), IL4(3), IL4R(1), IL5RA(4), IL6(1), IL6R(2), IL7(1), IL7R(2), ITGA1(3), ITGA2(5), ITGA2B(2), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGAM(5), ITGB3(7), KIT(6), KITLG(2), MME(6), MS4A1(4), TFRC(2), THPO(1), TPO(8) 18923288 199 61 196 59 78 40 3 59 17 2 0.28 0.99 167 ACE_INHIBITOR_PATHWAY_PHARMGKB ACE, AGT, AGTR1, AGTR2, BDKRB2, KNG1, NOS3, REN 8 ACE(2), AGT(4), AGTR1(3), AGTR2(4), BDKRB2(2), KNG1(3), NOS3(2), REN(3) 2299989 23 19 23 5 8 5 0 6 4 0 0.28 0.99 168 HSA02010_ABC_TRANSPORTERS_GENERAL Genes involved in ABC transporters - general ABCA1, ABCA10, ABCA12, ABCA13, ABCA2, ABCA3, ABCA4, ABCA5, ABCA6, ABCA7, ABCA8, ABCA9, ABCB1, ABCB10, ABCB11, ABCB4, ABCB5, ABCB6, ABCB7, ABCB8, ABCB9, ABCC1, ABCC10, ABCC11, ABCC12, ABCC2, ABCC3, ABCC4, ABCC5, ABCC6, ABCC8, ABCC9, ABCD1, ABCD2, ABCD3, ABCD4, ABCG1, ABCG2, ABCG4, ABCG5, ABCG8, CFTR, TAP1, TAP2 44 ABCA1(17), ABCA10(7), ABCA12(22), ABCA13(23), ABCA3(5), ABCA4(10), ABCA5(15), ABCA6(12), ABCA7(5), ABCA8(10), ABCA9(12), ABCB1(6), ABCB10(3), ABCB11(8), ABCB4(8), ABCB5(10), ABCB6(3), ABCB7(3), ABCB8(4), ABCB9(2), ABCC1(8), ABCC10(7), ABCC11(9), ABCC12(7), ABCC2(11), ABCC3(5), ABCC4(9), ABCC5(5), ABCC6(5), ABCC8(7), ABCC9(7), ABCD1(3), ABCD2(8), ABCD3(3), ABCD4(5), ABCG1(5), ABCG2(5), ABCG4(3), ABCG5(1), ABCG8(4), CFTR(8), TAP1(3), TAP2(4) 27623963 317 72 315 96 100 74 7 94 40 2 0.28 0.99 169 CYSTEINE_METABOLISM CARS, CTH, GOT1, GOT2, LDHA, LDHB, LDHC, MPST 8 CARS(5), CTH(1), GOT1(5), GOT2(1), LDHA(1), LDHB(1), LDHC(2) 1567834 16 13 16 2 7 4 0 3 2 0 0.28 0.99 170 HBXPATHWAY Hbx is a hepatitis B protein that activates a number of transcription factors, possibly by inducing calcium release from the mitochondrion to the cytoplasm. CREB1, GRB2, HBXIP, HRAS, PTK2B, SHC1, SOS1, SRC 8 CREB1(1), GRB2(2), HBXIP(2), PTK2B(1), SHC1(3), SOS1(5), SRC(3) 2056413 17 15 16 6 2 4 2 6 3 0 0.29 0.99 171 PARKINPATHWAY In Parkinson's disease, dopaminergic neurons contain Lewy bodies consisting of alpha-synuclein and parkin, an E3 ubiquitin ligase that targets glycosylated alpha-synuclein. GPR37, PARK2, PNUTL1, SNCA, SNCAIP, UBE2E2, UBE2F, UBE2G1, UBE2G2, UBE2L3, UBE2L6, UBL1 10 GPR37(6), PARK2(4), SNCA(1), SNCAIP(1), UBE2F(1), UBE2G1(2), UBE2L3(2) 1480553 17 13 17 7 5 5 0 6 1 0 0.29 0.99 172 INSULINPATHWAY Insulin regulates glucose levels via Ras-mediated transcriptional activation. CSNK2A1, ELK1, FOS, GRB2, HRAS, INS, INSR, IRS1, JUN, MAP2K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PTPN11, RAF1, RASA1, SHC1, SLC2A4, SOS1, SRF 20 CSNK2A1(4), GRB2(2), INSR(5), IRS1(5), MAP2K1(3), MAPK3(2), MAPK8(2), PIK3R1(5), PTPN11(2), RAF1(4), RASA1(5), SHC1(3), SLC2A4(3), SOS1(5), SRF(3) 5390958 53 32 51 16 12 14 3 17 7 0 0.29 0.99 173 HSA00271_METHIONINE_METABOLISM Genes involved in methionine metabolism AHCY, AMD1, BHMT, CBS, CTH, DNMT1, DNMT3A, DNMT3B, KIAA0828, MARS, MARS2, MAT1A, MAT2B, MTAP, MTFMT, MTR, SRM, TAT 17 AHCY(3), BHMT(3), CBS(2), CTH(1), DNMT1(12), DNMT3A(7), DNMT3B(3), MARS(3), MAT1A(5), MAT2B(2), MTFMT(1), MTR(6), TAT(3) 4869342 51 31 48 13 24 10 1 8 8 0 0.29 0.99 174 HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 Genes involved in glycan structures - biosynthesis 1 A4GNT, ALG1, ALG10, ALG10B, ALG11, ALG12, ALG13, ALG14, ALG2, ALG3, ALG6, ALG8, ALG9, B3GALT6, B3GNT1, B3GNT2, B3GNT6, B3GNT7, B4GALT1, B4GALT2, B4GALT3, B4GALT4, B4GALT5, B4GALT7, C1GALT1, C1GALT1C1, ChGn, CHPF, CHST1, CHST11, CHST12, CHST13, CHST14, CHST2, CHST3, CHST4, CHST6, CHST7, CHSY-2, CHSY1, CSGlcA-T, DAD1, DDOST, DPAGT1, EXT1, EXT2, EXTL1, EXTL2, EXTL3, FUT11, FUT8, GALNAC4S-6ST, GALNACT-2, GALNT1, GALNT10, GALNT11, GALNT12, GALNT13, GALNT14, GALNT17, GALNT2, GALNT3, GALNT4, GALNT5, GALNT6, GALNT7, GALNT8, GALNT9, GALNTL1, GALNTL2, GALNTL4, GALNTL5, GANAB, GCNT1, GCNT3, GCNT4, GCS1, HS2ST1, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, HS3ST5, HS6ST1, HS6ST2, HS6ST3, LOC728969, MAN1A1, MAN1A2, MAN1B1, MAN1C1, MAN2A1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, MGAT5B, NDST1, NDST2, NDST3, NDST4, OGT, RPN1, RPN2, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4, ST6GAL1, ST6GALNAC1, STT3B, UST, WBSCR17, XYLT1, XYLT2 107 A4GNT(2), ALG10(3), ALG10B(4), ALG11(1), ALG12(2), ALG13(1), ALG2(3), ALG3(1), ALG6(3), ALG8(5), ALG9(1), B3GNT1(2), B3GNT2(1), B3GNT7(4), B4GALT1(5), B4GALT2(3), B4GALT3(6), B4GALT5(2), C1GALT1C1(2), CHPF(3), CHST1(6), CHST11(2), CHST12(2), CHST13(1), CHST14(1), CHST2(1), CHST4(5), CHSY1(5), DAD1(2), DDOST(2), DPAGT1(1), EXT1(10), EXTL1(3), EXTL2(3), EXTL3(7), FUT8(1), GALNT1(2), GALNT10(5), GALNT11(4), GALNT12(1), GALNT13(5), GALNT2(3), GALNT3(4), GALNT5(6), GALNT6(2), GALNT7(2), GALNT8(1), GALNT9(2), GALNTL1(3), GALNTL2(6), GALNTL4(1), GALNTL5(5), GANAB(4), GCNT1(3), GCNT3(2), GCNT4(5), HS2ST1(3), HS3ST1(1), HS3ST2(1), HS3ST3B1(2), HS3ST5(4), HS6ST2(2), HS6ST3(2), MAN1A1(4), MAN1A2(2), MAN1B1(2), MAN1C1(4), MAN2A1(8), MGAT1(1), MGAT3(2), MGAT4A(2), MGAT4B(1), MGAT5(3), MGAT5B(2), NDST1(3), NDST2(5), NDST3(7), NDST4(4), OGT(4), ST3GAL1(1), ST3GAL2(1), ST3GAL3(4), ST3GAL4(2), ST6GAL1(1), ST6GALNAC1(2), STT3B(4), UST(1), XYLT1(4), XYLT2(2) 25199584 263 74 262 77 103 60 7 66 27 0 0.29 0.99 175 G1PATHWAY CDK4/6-cyclin D and CDK2-cyclin E phosphorylate Rb, which allows the transcription of genes needed for the G1/S cell cycle transition. ABL1, ATM, ATR, CCNA1, CCND1, CCNE1, CDC2, CDC25A, CDK2, CDK4, CDK6, CDKN1A, CDKN1B, CDKN2A, CDKN2B, DHFR, E2F1, GSK3B, HDAC1, MADH3, MADH4, RB1, SKP2, TFDP1, TGFB1, TGFB2, TGFB3, TP53 23 ABL1(4), ATR(13), CCNA1(4), CCNE1(3), CDC25A(2), CDK2(2), CDK4(2), CDK6(1), CDKN1A(1), CDKN1B(1), CDKN2A(1), GSK3B(7), HDAC1(2), RB1(4), SKP2(1), TFDP1(4), TGFB1(1), TGFB2(5) 5339997 58 29 58 11 20 11 2 16 8 1 0.29 0.99 176 SA_REG_CASCADE_OF_CYCLIN_EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. CCNA1, CCNA2, CCND1, CCNE1, CCNE2, CDK2, CDK4, CDKN1B, CDKN2A, E2F1, E2F2, E2F4, PRB1 13 CCNA1(4), CCNA2(3), CCNE1(3), CCNE2(1), CDK2(2), CDK4(2), CDKN1B(1), CDKN2A(1), E2F2(1), E2F4(1) 2032164 19 16 19 4 6 3 0 9 1 0 0.29 0.99 177 APOPTOSIS_KEGG APAF1, BAD, BAX, BCL2, BCL2A1, BCL2L1, BCL2L2, BOK, CASP1, CASP1, COPl, CASP10, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CD40, CD40LG, CRADD, CYCS, DAXX, DFFA, DFFB, FADD, FAS, FASLG, HRK, IKBKE, LTA, MCL1, NFKB1, NFKBIA, NGFB, NGFR, NR3C1, NTRK1, PTPN13, RIPK1, SFRS2IP, TFG, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF1, TRAF2, TRAF3, TRAF6 46 APAF1(7), BAD(1), BAX(1), BCL2(1), BCL2L1(1), BOK(1), CASP1(2), CASP10(2), CASP2(4), CASP3(1), CASP4(1), CASP6(1), CASP7(1), CASP9(2), CD40LG(6), CRADD(1), DFFA(2), DFFB(2), FASLG(1), IKBKE(3), NFKB1(3), NGFR(2), NR3C1(3), NTRK1(6), PTPN13(8), RIPK1(2), SFRS2IP(3), TFG(6), TNFRSF1A(1), TRADD(1), TRAF1(1), TRAF2(1), TRAF3(4), TRAF6(4) 10067013 86 44 85 40 27 16 4 27 11 1 0.29 0.99 178 HSA04670_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION Genes involved in Leukocyte transendothelial migration ACTN1, ACTN2, ACTN3, ACTN4, ARHGAP5, BCAR1, CD99, CDC42, CDH5, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTNND1, CXCL12, CXCR4, CYBA, CYBB, ESAM, EZR, F11R, GNAI1, GNAI2, GNAI3, GRLF1, ICAM1, ITGA4, ITGAL, ITGAM, ITGB1, ITGB2, ITK, JAM2, JAM3, MAPK11, MAPK12, MAPK13, MAPK14, MLLT4, MMP2, MMP9, MRCL3, MRLC2, MSN, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLPF, NCF1, NCF2, NCF4, NOX1, NOX3, OCLN, PECAM1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCG, PTK2, PTK2B, PTPN11, PXN, RAC1, RAC2, RAP1A, RAP1B, RAPGEF3, RAPGEF4, RASSF5, RHOA, RHOH, ROCK1, ROCK2, SIPA1, THY1, TXK, VASP, VAV1, VAV2, VAV3, VCAM1, VCL 107 ACTN1(3), ACTN2(7), ACTN3(2), ACTN4(2), ARHGAP5(6), CDH5(2), CLDN10(2), CLDN11(1), CLDN15(1), CLDN16(4), CLDN17(5), CLDN18(2), CLDN19(1), CLDN6(2), CLDN7(2), CLDN8(3), CLDN9(1), CTNNA1(10), CTNNA2(10), CTNNA3(9), CTNNB1(8), CTNND1(5), CXCL12(1), CXCR4(3), CYBB(1), ESAM(3), EZR(2), F11R(1), GNAI1(3), GRLF1(7), ICAM1(2), ITGA4(3), ITGAL(5), ITGAM(5), ITGB1(6), ITGB2(4), ITK(8), JAM3(3), MAPK12(2), MAPK14(3), MLLT4(3), MMP2(2), MMP9(6), MSN(3), MYL2(1), MYL7(1), NCF1(1), NCF2(1), NCF4(2), NOX1(1), NOX3(5), OCLN(1), PECAM1(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLCG1(4), PLCG2(9), PRKCA(2), PRKCG(8), PTK2(5), PTK2B(1), PTPN11(2), RAP1A(1), RAP1B(2), RAPGEF3(3), RAPGEF4(7), RASSF5(3), RHOH(2), ROCK1(8), ROCK2(2), SIPA1(1), TXK(4), VASP(3), VAV1(11), VAV2(2), VAV3(10), VCAM1(7), VCL(1) 28752058 299 79 294 87 121 60 5 72 41 0 0.30 0.99 179 HSA00031_INOSITOL_METABOLISM Genes involved in inositol metabolism ALDH6A1, TPI1 2 ALDH6A1(3), TPI1(1) 369810 4 4 4 0 0 0 0 4 0 0 0.30 0.99 180 GPCRDB_CLASS_B_SECRETIN_LIKE ADCYAP1R1, CALCR, CALCRL, CD97, CRHR1, CRHR2, ELTD1, EMR1, EMR2, GCGR, GHRHR, GIPR, GLP1R, GLP2R, GPR64, LPHN1, LPHN2, LPHN3, PTHR1, PTHR2, SCTR, VIPR1, VIPR2 20 ADCYAP1R1(1), CALCR(3), CALCRL(5), CD97(3), CRHR1(1), CRHR2(4), ELTD1(5), EMR1(5), EMR2(2), GHRHR(2), GLP1R(2), GLP2R(3), GPR64(5), LPHN1(3), LPHN2(10), LPHN3(10), SCTR(3), VIPR1(3), VIPR2(3) 6457175 73 35 71 25 25 14 1 24 9 0 0.30 0.99 181 OVARIAN_INFERTILITY_GENES ATM, BMPR1B, CCND2, CDK4, CDKN1B, CEBPB, DAZL, DMC1, EGR1, ESR2, FSHR, GJA4, INHA, LHCGR, MLH1, MSH5, NCOR1, NR5A1, NRIP1, PGR, PRLR, PTGER2, SMPD1, VDR, ZP2 24 BMPR1B(9), CCND2(1), CDK4(2), CDKN1B(1), DAZL(1), DMC1(3), EGR1(2), ESR2(2), FSHR(6), GJA4(2), INHA(2), LHCGR(4), MLH1(5), MSH5(4), NCOR1(7), NRIP1(5), PGR(4), PRLR(2), PTGER2(1), SMPD1(6), VDR(1), ZP2(6) 6638066 76 34 76 24 25 17 1 22 11 0 0.30 0.99 182 ERK5PATHWAY Signaling between a tissue and its innervating axon stimulates retrograde transport via Trk receptors, which activate Erk5, which induces transcription of anti-apoptotic factors. AKT1, CREB1, GRB2, HRAS, MAPK1, MAPK3, MAPK7, MEF2A, MEF2B, MEF2C, MEF2D, NTRK1, PIK3CA, PIK3R1, PLCG1, RPS6KA1, SHC1 16 AKT1(2), CREB1(1), GRB2(2), MAPK1(2), MAPK3(2), MAPK7(3), MEF2A(3), MEF2C(7), MEF2D(1), NTRK1(6), PIK3R1(5), PLCG1(4), RPS6KA1(1), SHC1(3) 4024684 42 25 41 13 14 11 2 9 6 0 0.30 0.99 183 TH1TH2PATHWAY Helper T subtype Th1 produces pro-inflammatory cytokines that stimulate phagocytosis, while Th2 cells promote antibody production and activate eosinophils. CD28, CD86, HLA-DRA, HLA-DRB1, IFNG, IFNGR1, IFNGR2, IL12A, IL12B, IL12RB1, IL12RB2, IL18, IL18R1, IL2, IL2RA, IL4, IL4R, TNFRSF5, TNFSF5 16 CD28(1), HLA-DRA(4), HLA-DRB1(1), IFNG(1), IFNGR1(2), IFNGR2(1), IL12B(2), IL12RB1(2), IL12RB2(5), IL2(3), IL2RA(2), IL4(3), IL4R(1) 2673996 28 17 28 11 10 7 0 8 1 2 0.31 0.99 184 PAR1PATHWAY Activated extracellular thrombin cleaves and activates the G-protein coupled receptors PAR1 and PAR4, which activate platelets. ADCY1, ARHA, ARHGEF1, F2, F2R, F2RL3, GNA12, GNA13, GNAI1, GNAQ, GNB1, GNGT1, MAP3K7, PIK3CA, PIK3R1, PLCB1, PPP1R12B, PRKCA, PRKCB1, PTK2B, ROCK1 18 ADCY1(4), ARHGEF1(4), F2(2), GNA12(2), GNA13(2), GNAI1(3), GNAQ(3), GNB1(1), MAP3K7(2), PIK3R1(5), PLCB1(8), PPP1R12B(5), PRKCA(2), PTK2B(1), ROCK1(8) 5535913 52 29 51 17 16 7 2 17 10 0 0.31 0.99 185 GCRPATHWAY Corticosteroids activate the glucocorticoid receptor (GR), which inhibits NF-kB and activates Annexin-1, thus inhibiting the inflammatory response. ADRB2, AKT1, ANXA1, CALM1, CALM2, CALM3, CRN, GNAS, GNB1, GNGT1, HSPCA, NFKB1, NOS3, NPPA, NR3C1, PIK3CA, PIK3R1, RELA, SYT1 16 AKT1(2), GNAS(6), GNB1(1), NFKB1(3), NOS3(2), NPPA(1), NR3C1(3), PIK3R1(5), RELA(2), SYT1(1) 3648440 26 22 26 13 9 2 2 7 6 0 0.31 0.99 186 HSA00480_GLUTATHIONE_METABOLISM Genes involved in glutathione metabolism ANPEP, G6PD, GCLC, GCLM, GGT1, GGTL3, GGTL4, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSR, GSS, GSTA1, GSTA2, GSTA3, GSTA4, GSTA5, GSTK1, GSTM1, GSTM2, GSTM3, GSTM4, GSTM5, GSTO2, GSTP1, GSTT1, GSTT2, GSTZ1, IDH1, IDH2, MGST1, MGST2, MGST3, OPLAH, TXNDC12 34 ANPEP(5), G6PD(2), GCLC(4), GCLM(1), GPX1(1), GPX2(2), GPX3(1), GPX5(4), GPX6(2), GSR(1), GSS(4), GSTA1(1), GSTA3(3), GSTA5(1), GSTM2(2), GSTM3(2), GSTM4(2), GSTM5(1), GSTZ1(2), IDH1(3), IDH2(7), MGST1(2), MGST3(1) 4822561 54 29 54 8 11 13 2 21 7 0 0.31 0.99 187 ACTINYPATHWAY The Arp 2/3 complex localizes to the Y-junction of polymerizing actin fibers that enable lamellipod extension and consequent cell motility. ABI-2, ACTA1, ACTR2, ACTR3, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, NCK1, NCKAP1, NTRK1, PIR, PSMA7, RAC1, WASF1, WASF2, WASF3, WASL 18 ACTA1(3), ACTR2(1), ACTR3(2), ARPC1A(5), ARPC1B(2), ARPC2(1), NCKAP1(8), NTRK1(6), WASF1(1), WASF2(2), WASF3(2), WASL(5) 3602417 38 24 38 9 12 9 2 11 4 0 0.31 0.99 188 HSA04664_FC_EPSILON_RI_SIGNALING_PATHWAY Genes involved in Fc epsilon RI signaling pathway AKT1, AKT2, AKT3, BTK, CSF2, FCER1A, FCER1G, FYN, GAB2, GRB2, HRAS, IL13, IL3, IL4, IL5, INPP5D, KRAS, LAT, LCP2, LYN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK9, MS4A2, NRAS, PDK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCG1, PLCG2, PRKCA, PRKCB1, PRKCD, PRKCE, RAC1, RAC2, RAC3, RAF1, SOS1, SOS2, SYK, TNF, VAV1, VAV2, VAV3 70 AKT1(2), AKT2(5), BTK(6), FCER1A(2), FYN(4), GAB2(1), GRB2(2), IL13(1), IL3(3), IL4(3), INPP5D(2), LCP2(2), LYN(4), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK8(2), MAPK9(3), MS4A2(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLCG1(4), PLCG2(9), PRKCA(2), PRKCD(3), PRKCE(4), RAF1(4), SOS1(5), SOS2(9), VAV1(11), VAV2(2), VAV3(10) 15953147 158 56 154 43 60 36 7 41 14 0 0.31 0.99 189 GPCRDB_OTHER ADORA3, ALG6, C5R1, CCKBR, CCR2, CCR3, CCR5, CELSR1, CELSR2, CELSR3, CHRM2, CHRM3, CIDEB, CXCR3, DRD4, EBI2, EDG1, EDNRA, ELA3A, EMR2, EMR3, F2R, FSHR, FY, GHRHR, GNRHR, GPR, GPR116, GPR132, GPR133, GPR135, GPR143, GPR145, GPR17, GPR18, GPR55, GPR56, GPR61, GPR73L1, GPR77, GPR84, GPR88, GRCA, GRM1, GRPR, HRH4, IL8RA, IL8RB, LGR6, LGR7, LPHN2, LPHN3, LTB4R2, MASS1, NTSR1, OR2A9P, OR2M4, OR5E1P, OR7E19P, OR7E47P, OR7E37P, OR7E18P, OR7E35P, LOC441453, OR8G1, LOC442754, OR8G2, P2RY11, P2RY13, PTGFR, RLN3R1, SMO, SSTR2, TAAR5, TSHR, VN1R1 52 ADORA3(3), ALG6(3), CCKBR(3), CCR3(3), CCR5(1), CELSR1(8), CELSR2(8), CELSR3(5), CHRM2(8), CHRM3(4), EDNRA(4), EMR2(2), EMR3(7), FSHR(6), GHRHR(2), GNRHR(4), GPR116(7), GPR132(1), GPR133(7), GPR143(2), GPR17(1), GPR55(1), GPR56(1), GPR61(4), GPR77(1), GPR84(3), GPR88(1), GRM1(9), GRPR(3), HRH4(2), LPHN2(10), LPHN3(10), NTSR1(1), OR8G2(1), P2RY13(2), PTGFR(6), SSTR2(2), TAAR5(5), TSHR(6), VN1R1(4) 15218959 161 59 158 60 62 34 3 47 15 0 0.31 0.99 190 PDGFPATHWAY Platelet-derived growth factor (PDGF) receptor is phosphorylated on ligand binding and promotes cell proliferation. CSNK2A1, ELK1, FOS, GRB2, HRAS, JAK1, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, PDGFA, PDGFRA, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, SRF, STAT1, STAT3, STAT5A 24 CSNK2A1(4), GRB2(2), JAK1(3), MAP2K1(3), MAP3K1(6), MAPK3(2), MAPK8(2), PDGFA(1), PDGFRA(13), PIK3R1(5), PLCG1(4), PRKCA(2), RAF1(4), RASA1(5), SHC1(3), SOS1(5), SRF(3), STAT1(6), STAT3(2) 7431062 75 34 72 22 22 19 5 17 11 1 0.31 0.99 191 ERYTHPATHWAY Erythropoietin selectively stimulates erythrocyte differentiation from CFU-GEMM cells in bone marrow. CCL3, CSF2, CSF3, EPO, FLT3, IGF1, IL11, IL1A, IL3, IL6, IL9, KITLG, TGFB1, TGFB2, TGFB3 15 FLT3(3), IGF1(2), IL11(1), IL1A(1), IL3(3), IL6(1), IL9(1), KITLG(2), TGFB1(1), TGFB2(5) 1978587 20 16 19 8 8 1 0 8 3 0 0.31 0.99 192 TERCPATHWAY hTERC, the RNA subunit of telomerase, and hTERT, the catalytic protein subunit, are required for telomerase activity and are overexpressed in many cancers. NFYA, NFYB, NFYC, RB1, SP1, SP3 6 NFYA(1), NFYB(1), NFYC(3), RB1(4), SP1(2), SP3(2) 1558682 13 11 13 3 2 4 1 5 0 1 0.32 0.99 193 INTEGRINPATHWAY Integrins are cell surface receptors commonly present at focal adhensions that interact with the extracellular matrix and transduce extracellular signaling. ACTA1, ACTN1, ACTN2, ACTN3, ARHA, BCAR1, BCR, CAPN1, CAPNS1, CAPNS2, CAV1, CRKL, CSK, FYN, GRB2, GRF2, HRAS, ITGA1, ITGB1, JUN, MAP2K1, MAP2K2, MAPK1, MAPK3, MAPK8, PPP1R12B, PTK2, PXN, RAF1, RAP1A, ROCK1, SHC1, SOS1, SRC, TLN1, TNS, VCL, ZYX 35 ACTA1(3), ACTN1(3), ACTN2(7), ACTN3(2), BCR(6), CAPN1(2), CAPNS1(1), CAPNS2(1), CRKL(2), CSK(1), FYN(4), GRB2(2), ITGA1(3), ITGB1(6), MAP2K1(3), MAPK1(2), MAPK3(2), MAPK8(2), PPP1R12B(5), PTK2(5), RAF1(4), RAP1A(1), ROCK1(8), SHC1(3), SOS1(5), SRC(3), TLN1(5), VCL(1) 11063818 92 48 89 29 38 22 3 22 7 0 0.32 0.99 194 D4GDIPATHWAY D4-GDI inhibits the pro-apoptotic Rho GTPases and is cleaved by caspase-3. ADPRT, APAF1, ARHGAP5, ARHGDIB, CASP1, CASP10, CASP3, CASP8, CASP9, CYCS, GZMB, JUN, PRF1 11 APAF1(7), ARHGAP5(6), ARHGDIB(3), CASP1(2), CASP10(2), CASP3(1), CASP9(2), GZMB(1) 2723642 24 20 23 9 4 4 0 10 6 0 0.32 0.99 195 ST_JAK_STAT_PATHWAY The Janus kinase-signal transducer and activator of transcription (JAK-STAT) pathway transduces extracellular signals to promote gene activation. CISH, JAK1, JAK2, JAK3, PIAS1, PIAS3, PTPRU, REG1A, SOAT1 9 JAK1(3), JAK2(6), JAK3(6), PIAS1(3), PIAS3(4), PTPRU(6), REG1A(3), SOAT1(1) 3286069 32 22 30 11 15 7 1 3 5 1 0.33 0.99 196 ST_ERK1_ERK2_MAPK_PATHWAY The Erk1 and Erk2 MAP kinase pathways are regulated by Raf, Mos, and Tpl-2. ARAF1, ATF1, BAD, BRAF, COPEB, CREB1, CREB3, CREB5, DUSP4, DUSP6, DUSP9, EEF2K, EIF4E, GRB2, HTATIP, MAP2K1, MAP2K2, MAP3K8, MAPK1, MAPK3, MKNK1, MKNK2, MOS, NFKB1, RAP1A, RPS6KA1, RPS6KA2, RPS6KA3, SHC1, SOS1, SOS2, TRAF3 28 ATF1(1), BAD(1), CREB1(1), CREB3(2), CREB5(2), DUSP4(1), DUSP6(4), DUSP9(1), GRB2(2), MAP2K1(3), MAP3K8(2), MAPK1(2), MAPK3(2), MKNK1(1), MKNK2(2), MOS(2), NFKB1(3), RAP1A(1), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), SHC1(3), SOS1(5), SOS2(9), TRAF3(4) 6634387 66 34 65 21 20 16 3 16 11 0 0.33 0.99 197 PLK3PATHWAY Active Plk3 phosphorylates CDC25c, blocking the G2/M transition, and phosphorylates p53 to induce apoptosis. ATM, ATR, CDC25C, CHEK1, CHEK2, CNK, TP53, YWHAH 5 ATR(13), CDC25C(3), CHEK1(1), CHEK2(1) 2066153 18 13 18 1 6 3 2 4 3 0 0.33 0.99 198 HSA00791_ATRAZINE_DEGRADATION Genes involved in atrazine degradation ADAR, APOBEC1, APOBEC2, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3F, APOBEC3G, APOBEC4 9 ADAR(6), APOBEC1(2), APOBEC2(1), APOBEC3A(1), APOBEC3C(3), APOBEC3F(1), APOBEC3G(2), APOBEC4(2) 1709552 18 14 18 3 7 4 0 5 2 0 0.33 0.99 199 HSA00730_THIAMINE_METABOLISM Genes involved in thiamine metabolism LHPP, MTMR1, MTMR2, MTMR6, NFS1, PHPT1, THTPA, TPK1 8 LHPP(1), MTMR1(4), MTMR2(1), MTMR6(4), NFS1(2), PHPT1(1), THTPA(1) 1492282 14 12 14 4 4 3 1 4 2 0 0.33 0.99 200 HSA00643_STYRENE_DEGRADATION Genes involved in styrene degradation FAH, GSTZ1, HGD 3 FAH(1), GSTZ1(2), HGD(1) 388272 4 3 4 3 0 1 0 2 1 0 0.33 0.99 201 HSA04720_LONG_TERM_POTENTIATION Genes involved in long-term potentiation ADCY1, ADCY8, ARAF, ATF4, BRAF, CACNA1C, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CHP, CREBBP, EP300, GNAQ, GRIA1, GRIA2, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, GRM1, GRM5, HRAS, ITPR1, ITPR2, ITPR3, KRAS, MAP2K1, MAP2K2, MAPK1, MAPK3, NRAS, PLCB1, PLCB2, PLCB3, PLCB4, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PPP1R1A, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, RAF1, RAP1A, RAP1B, RAPGEF3, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6 63 ADCY1(4), ADCY8(11), ARAF(3), CACNA1C(10), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CAMK4(2), CREBBP(21), EP300(13), GNAQ(3), GRIA2(10), GRIN1(1), GRIN2A(15), GRIN2B(8), GRIN2C(2), GRIN2D(3), GRM1(9), GRM5(8), ITPR1(11), ITPR2(12), ITPR3(11), MAP2K1(3), MAPK1(2), MAPK3(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PPP1CB(1), PPP1CC(1), PPP1R12A(2), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKX(2), RAF1(4), RAP1A(1), RAP1B(2), RAPGEF3(3), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KA6(5) 22946411 250 69 249 97 107 62 9 48 24 0 0.33 0.99 202 HSA00950_ALKALOID_BIOSYNTHESIS_I Genes involved in alkaloid biosynthesis I DDC, GOT1, GOT2, TAT, TYR 5 DDC(1), GOT1(5), GOT2(1), TAT(3), TYR(2) 1092102 12 10 12 5 5 3 0 3 1 0 0.34 0.99 203 ERBB4PATHWAY ErbB4 (aka HER4) is a receptor tyrosine kinase that binds neuregulins as well as members of the EGF family, which also target EGF receptors. ADAM17, ERBB4, NRG2, NRG3, PRKCA, PRKCB1, PSEN1 5 ADAM17(6), NRG2(4), NRG3(3), PRKCA(2), PSEN1(3) 1472165 18 13 18 2 6 5 0 4 3 0 0.34 0.99 204 ST_WNT_CA2_CYCLIC_GMP_PATHWAY Some Wnt glycoprotein/Frizzled receptor interactions increase intracellular calcium and decrease cGMP. BF, CAMK2A, CAMK2B, CAMK2D, CAMK2G, DAG1, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, NFAT5, PDE6A, PDE6B, PDE6C, PDE6D, PDE6G, PDE6H, SLC6A13, TF 19 CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), DAG1(4), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), NFAT5(5), PDE6A(6), PDE6B(5), PDE6C(8), PDE6D(1), SLC6A13(5), TF(7) 8482305 86 38 86 26 35 13 7 23 8 0 0.34 0.99 205 ST_STAT3_PATHWAY The transcription factor STAT3 is involved in cell growth regulation and is commonly upregulated in tumors. CISH, IL6, IL6R, JAK1, JAK2, JAK3, PIAS3, PTPRU, REG1A, SRC, STAT3 11 IL6(1), IL6R(2), JAK1(3), JAK2(6), JAK3(6), PIAS3(4), PTPRU(6), REG1A(3), SRC(3), STAT3(2) 3626098 36 24 34 16 17 10 1 4 3 1 0.34 0.99 206 LYSINE_BIOSYNTHESIS AADAT, AASDH, AASDHPPT, AASS, KARS 5 AADAT(1), AASDH(3), AASDHPPT(2), AASS(7), KARS(3) 1623775 16 12 16 5 5 3 0 6 2 0 0.34 0.99 207 ST_GA12_PATHWAY G-alpha-12 promotes cell survival and proliferation, is involved in the stress response, and activates JNK. BF, BTK, DLG4, EPHB2, F2, F2RL1, F2RL2, F2RL3, JUN, MAP2K5, MAPK1, MAPK7, MAPK8, MYEF2, PLD1, PLD2, PLD3, PTK2, RAF1, RASAL1, SRC, TEC, VAV1 22 BTK(6), DLG4(2), EPHB2(7), F2(2), F2RL2(2), MAP2K5(2), MAPK1(2), MAPK7(3), MAPK8(2), MYEF2(7), PLD1(8), PLD2(1), PLD3(5), PTK2(5), RAF1(4), RASAL1(1), SRC(3), TEC(1), VAV1(11) 6501690 74 36 72 24 36 18 1 14 5 0 0.34 0.99 208 IL18PATHWAY Pro-inflammatory IL-18 is activated in macrophages by caspase-1 cleavage and, in conjunction with IL-12, stimulates Th1 cell differentiation. CASP1, IFNG, IL12A, IL12B, IL18, IL2 6 CASP1(2), IFNG(1), IL12B(2), IL2(3) 706519 8 6 8 5 0 3 0 5 0 0 0.34 0.99 209 GLUTAMATE_METABOLISM ABAT, ALDH4A1, ALDH5A1, CAD, CPS1, EPRS, GAD1, GAD2, GCLC, GCLM, GFPT1, GLS, GLS2, GLUD1, GLUL, GMPS, GOT1, GOT2, GPT, GPT2, GSS, NADSYN1, PPAT, QARS 24 ABAT(5), ALDH4A1(2), ALDH5A1(4), CAD(10), CPS1(8), EPRS(10), GAD1(7), GAD2(4), GCLC(4), GCLM(1), GFPT1(3), GLS2(2), GLUD1(2), GLUL(3), GMPS(5), GOT1(5), GOT2(1), GPT2(2), GSS(4), NADSYN1(2), PPAT(3), QARS(7) 7705366 94 37 94 17 31 26 2 28 7 0 0.34 0.99 210 TOB1PATHWAY TGF-beta signaling activates SMADs, which interact with intracellular Tob to maintain unstimulated T cells by repressing IL-2 expression. CD28, CD3D, CD3E, CD3G, CD3Z, IFNG, IL2, IL2RA, IL4, MADH3, MADH4, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TGFBR3, TOB1, TOB2, TRA@, TRB@ 15 CD28(1), CD3D(1), CD3G(2), IFNG(1), IL2(3), IL2RA(2), IL4(3), TGFB1(1), TGFB2(5), TGFBR1(6), TGFBR3(5), TOB2(1) 2218490 31 16 30 11 14 4 0 9 4 0 0.34 0.99 211 BIOGENIC_AMINE_SYNTHESIS AANAT, ACHE, CHAT, COMT, DBH, DDC, DXYS155E, GAD1, GAD2, HDC, MAOA, PAH, PNMT, SLC18A3, TH, TPH1 15 CHAT(6), DBH(4), DDC(1), GAD1(7), GAD2(4), HDC(3), MAOA(2), PAH(4), SLC18A3(6), TPH1(1) 3367631 38 26 38 18 16 10 1 10 1 0 0.34 0.99 212 SIG_CD40PATHWAYMAP Genes related to CD40 signaling DUSP1, GORASP1, IKBKG, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MAPKAPK5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PIK3CA, PIK3CD, PIK3R1, SYT1, TNFRSF5, TRAF2, TRAF3, TRAF5, TRAF6 30 DUSP1(2), GORASP1(3), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3), MAPKAPK5(1), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PIK3CD(2), PIK3R1(5), SYT1(1), TRAF2(1), TRAF3(4), TRAF5(4), TRAF6(4) 7023570 56 36 56 19 15 11 0 19 11 0 0.34 0.99 213 RACCYCDPATHWAY Ras, Rac, and Rho coordinate to induce cyclin D1 expression and activate cdk2 to promote the G1/S transition. AKT1, ARHA, CCND1, CCNE1, CDK2, CDK4, CDK6, CDKN1A, CDKN1B, E2F1, HRAS, MAPK1, MAPK3, NFKB1, NFKBIA, PAK1, PIK3CA, PIK3R1, RAC1, RAF1, RB1, RELA, TFDP1 21 AKT1(2), CCNE1(3), CDK2(2), CDK4(2), CDK6(1), CDKN1A(1), CDKN1B(1), MAPK1(2), MAPK3(2), NFKB1(3), PAK1(4), PIK3R1(5), RAF1(4), RB1(4), RELA(2), TFDP1(4) 4260658 42 25 41 8 11 10 2 12 6 1 0.34 0.99 214 TALL1PATHWAY APRIL and BAFF bind to BCMA and TACI receptors on B cell surfaces, promoting immunoglobulin production and cell proliferation. CHUK, MAP3K14, MAPK14, MAPK8, NFKB1, RELA, TNFRSF13B, TNFRSF13C, TNFRSF17, TNFSF13, TNFSF13B, TRAF2, TRAF3, TRAF5, TRAF6 15 CHUK(4), MAP3K14(2), MAPK14(3), MAPK8(2), NFKB1(3), RELA(2), TNFRSF13B(4), TNFRSF17(2), TNFSF13(2), TRAF2(1), TRAF3(4), TRAF5(4), TRAF6(4) 3439420 37 25 36 11 17 6 0 8 6 0 0.35 1.00 215 SA_PROGRAMMED_CELL_DEATH Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. APAF1, BAD, BAK1, BAX, BCL10, BCL2, BCL2L1, BCL2L11, BID, CASP8AP2, CASP9, CES1 12 APAF1(7), BAD(1), BAK1(1), BAX(1), BCL10(3), BCL2(1), BCL2L1(1), BCL2L11(2), BID(1), CASP8AP2(12), CASP9(2), CES1(4) 2680079 36 21 36 8 11 5 0 13 7 0 0.35 1.00 216 HSA00401_NOVOBIOCIN_BIOSYNTHESIS Genes involved in novobiocin biosynthesis GOT1, GOT2, TAT 3 GOT1(5), GOT2(1), TAT(3) 610827 9 7 9 1 4 3 0 1 1 0 0.35 1.00 217 HSA04320_DORSO_VENTRAL_AXIS_FORMATION Genes involved in dorso-ventral axis formation BRAF, CPEB1, EGFR, ERBB2, ERBB4, ETS1, ETS2, ETV6, ETV7, FMN2, GRB2, KRAS, MAP2K1, MAPK1, MAPK3, NOTCH1, NOTCH2, NOTCH3, NOTCH4, PIWIL1, PIWIL2, PIWIL3, PIWIL4, RAF1, SOS1, SOS2, SPIRE1, SPIRE2 25 CPEB1(2), EGFR(10), ERBB2(6), ETS2(2), ETV6(4), FMN2(4), GRB2(2), MAP2K1(3), MAPK1(2), MAPK3(2), NOTCH2(11), NOTCH3(12), NOTCH4(3), PIWIL1(5), PIWIL2(6), PIWIL3(8), PIWIL4(6), RAF1(4), SOS1(5), SOS2(9), SPIRE1(2), SPIRE2(1) 10862836 109 49 107 35 41 27 3 32 6 0 0.36 1.00 218 HSA00290_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS Genes involved in valine, leucine and isoleucine biosynthesis BCAT1, BCAT2, IARS, IARS2, ILVBL, LARS, LARS2, PDHA1, PDHA2, PDHB, VARS, VARS2 12 BCAT1(1), BCAT2(1), IARS(5), IARS2(6), ILVBL(2), LARS(4), LARS2(2), PDHA1(4), PDHA2(6), PDHB(2), VARS(1), VARS2(6) 4119857 40 25 40 8 18 10 0 6 6 0 0.36 1.00 219 TERTPATHWAY hTERC, the RNA subunit of telomerase, and hTERT, the catalytic protein subunit, are required for telomerase activity and are overexpressed in many cancers. HDAC1, MAX, MYC, SP1, SP3, TP53, WT1, ZNF42 6 HDAC1(2), MAX(1), SP1(2), SP3(2), WT1(4) 1424606 11 10 11 3 6 3 1 1 0 0 0.37 1.00 220 1_2_DICHLOROETHANE_DEGRADATION ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1 8 ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1) 1866808 28 17 28 3 12 8 0 8 0 0 0.38 1.00 221 ASCORBATE_AND_ALDARATE_METABOLISM ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1 8 ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1) 1866808 28 17 28 3 12 8 0 8 0 0 0.38 1.00 222 HSA04350_TGF_BETA_SIGNALING_PATHWAY Genes involved in TGF-beta signaling pathway ACVR1, ACVR1B, ACVR1C, ACVR2A, ACVR2B, ACVRL1, AMH, AMHR2, BMP2, BMP4, BMP5, BMP6, BMP7, BMP8A, BMP8B, BMPR1A, BMPR1B, BMPR2, CDKN2B, CHRD, COMP, CREBBP, CUL1, DCN, E2F4, E2F5, EP300, FST, GDF5, GDF6, GDF7, hCG_1982709, ID1, ID2, ID3, ID4, IFNG, INHBA, INHBB, INHBC, INHBE, LEFTY1, LEFTY2, LTBP1, MAPK1, MAPK3, MYC, NODAL, NOG, PITX2, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, RBL1, RBL2, RBX1, RHOA, ROCK1, ROCK2, RPS6KB1, RPS6KB2, SKP1, SMAD1, SMAD2, SMAD3, SMAD4, SMAD5, SMAD6, SMAD7, SMAD9, SMURF1, SMURF2, SP1, TFDP1, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, THBS1, THBS2, THBS3, THBS4, TNF, ZFYVE16, ZFYVE9 82 ACVR1(3), ACVR1C(2), ACVR2B(3), ACVRL1(3), AMHR2(2), BMP4(1), BMP5(4), BMP6(3), BMP7(5), BMP8A(1), BMPR1A(4), BMPR1B(9), BMPR2(7), CHRD(5), COMP(2), CREBBP(21), CUL1(7), DCN(3), E2F4(1), E2F5(2), EP300(13), FST(2), GDF5(1), GDF6(2), IFNG(1), INHBB(1), INHBC(2), LTBP1(8), MAPK1(2), MAPK3(2), NODAL(1), PITX2(2), PPP2CA(1), PPP2R1A(4), PPP2R1B(1), PPP2R2A(1), PPP2R2B(1), PPP2R2C(3), RBL1(3), RBL2(8), ROCK1(8), ROCK2(2), RPS6KB1(3), RPS6KB2(1), SKP1(1), SMAD1(2), SMAD3(6), SMAD9(2), SMURF1(1), SMURF2(2), SP1(2), TFDP1(4), TGFB1(1), TGFB2(5), TGFBR1(6), THBS1(8), THBS2(10), THBS3(2), THBS4(1), ZFYVE16(9), ZFYVE9(6) 21662371 229 67 226 91 78 60 2 56 33 0 0.38 1.00 223 HSA00053_ASCORBATE_AND_ALDARATE_METABOLISM Genes involved in ascorbate and aldarate metabolism ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, MIOX, UGDH 9 ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), MIOX(1), UGDH(3) 1989268 24 17 24 5 9 7 0 6 2 0 0.38 1.00 224 CERAMIDEPATHWAY Ceramide is a lipid signaling molecule that can activate proliferative or apoptotic pathways, depending on signaling context, localization, and cell type. BAD, BAX, BCL2, CASP8, CYCS, FADD, MAP2K1, MAP2K4, MAP3K1, MAPK1, MAPK3, MAPK8, NFKB1, NSMAF, PDCD8, RAF1, RELA, RIPK1, SMPD1, TNFRSF1A, TRADD, TRAF2 19 BAD(1), BAX(1), BCL2(1), MAP2K1(3), MAP3K1(6), MAPK1(2), MAPK3(2), MAPK8(2), NFKB1(3), NSMAF(1), RAF1(4), RELA(2), RIPK1(2), SMPD1(6), TNFRSF1A(1), TRADD(1), TRAF2(1) 4378809 39 25 38 10 19 10 2 5 3 0 0.38 1.00 225 HCMVPATHWAY Cytomegalovirus activates MAP kinase pathways in the host cell, inducing transcription of viral genes. AKT1, CREB1, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAP3K1, MAPK1, MAPK14, MAPK3, NFKB1, PIK3CA, PIK3R1, RB1, RELA, SP1 15 AKT1(2), CREB1(1), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAPK1(2), MAPK14(3), MAPK3(2), NFKB1(3), PIK3R1(5), RB1(4), RELA(2), SP1(2) 4083729 39 22 39 10 12 9 3 8 6 1 0.39 1.00 226 RECKPATHWAY RECK is a membrane-anchored inhibitor of matrix metalloproteinases, which are expressed by tumor cells and promote metastasis. HRAS, MMP14, MMP2, MMP9, RECK, TIMP1, TIMP2, TIMP3, TIMP4 9 MMP14(4), MMP2(2), MMP9(6), RECK(3), TIMP1(1), TIMP2(2), TIMP3(2), TIMP4(2) 1761554 22 16 22 5 13 3 2 4 0 0 0.39 1.00 227 PKCPATHWAY Gq-coupled receptors promote hydrolysis of PIP2 to DAG and IP3, which causes calcium influx and activates protein kinase C. GNAQ, NFKB1, NFKBIA, PLCB1, PRKCA, PRKCB1, RELA 6 GNAQ(3), NFKB1(3), PLCB1(8), PRKCA(2), RELA(2) 1929359 18 14 18 5 6 3 0 6 3 0 0.39 1.00 228 EPHA4PATHWAY Eph Kinases and ephrins support platelet aggregation ACTA1, EPHA4, EPHB1, FYN, ITGA1, ITGB1, L1CAM, LYN, RAP1B, SELP 10 ACTA1(3), EPHA4(4), EPHB1(6), FYN(4), ITGA1(3), ITGB1(6), L1CAM(2), LYN(4), RAP1B(2), SELP(4) 3670551 38 23 38 8 14 12 0 9 3 0 0.40 1.00 229 HSA00780_BIOTIN_METABOLISM Genes involved in biotin metabolism BTD, HLCS, SPCS1, SPCS3 4 BTD(2), HLCS(4), SPCS1(1) 729739 7 7 6 2 4 0 0 1 2 0 0.40 1.00 230 EIF2PATHWAY Eukaryotic initiation factor 2 (EIF2) initiates translation by transferring Met-tRNA to the 40S ribosome in a GTP-dependent process. EIF2AK3, EIF2AK4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF5, GSK3B, HRI, PPP1CA, PRKR 9 EIF2AK3(1), EIF2AK4(5), EIF2B5(5), EIF2S2(1), EIF2S3(1), EIF5(3), GSK3B(7) 2699673 23 17 23 3 6 7 2 3 5 0 0.40 1.00 231 LIMONENE_AND_PINENE_DEGRADATION ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, ECHS1, EHHADH, HADHA, SDS 12 ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), ECHS1(2), EHHADH(2), HADHA(2), SDS(2) 2851021 36 21 36 4 15 10 0 8 3 0 0.40 1.00 232 RASPATHWAY Ras activation stimulates many signaling cascades, including PI3K/AKT activation to inhibit apoptosis. AKT1, ARHA, BAD, BCL2L1, CASP9, CDC42, CHUK, ELK1, H2AFX, HRAS, MAP2K1, MAPK3, MLLT7, NFKB1, PIK3CA, PIK3R1, RAC1, RAF1, RALA, RALBP1, RALGDS, RELA, RHOA 19 AKT1(2), BAD(1), BCL2L1(1), CASP9(2), CHUK(4), MAP2K1(3), MAPK3(2), NFKB1(3), PIK3R1(5), RAF1(4), RALBP1(4), RALGDS(1), RELA(2) 3894891 34 24 33 8 16 7 2 3 6 0 0.40 1.00 233 GHPATHWAY Growth hormone receptors dimerize on ligand binding and activate the JAK2 protein kinase. GH1, GHR, GRB2, HRAS, INS, INSR, IRS1, JAK2, MAP2K1, MAPK1, MAPK3, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTPN6, RAF1, RPS6KA1, SHC1, SLC2A4, SOCS1, SOS1, SRF, STAT5A, STAT5B, TCF1 24 GH1(1), GHR(6), GRB2(2), INSR(5), IRS1(5), JAK2(6), MAP2K1(3), MAPK1(2), MAPK3(2), PIK3R1(5), PLCG1(4), PRKCA(2), PTPN6(4), RAF1(4), RPS6KA1(1), SHC1(3), SLC2A4(3), SOS1(5), SRF(3), STAT5B(2) 7177880 68 34 66 25 24 11 4 22 6 1 0.41 1.00 234 ST_T_CELL_SIGNAL_TRANSDUCTION On activation of the T cell receptor, phospholipase C is activated to produce second messengers DAG and PIP3, both required for T cell activation. CBL, CD28, CD3D, CSK, CTLA4, DAG1, DTYMK, EPHB2, FBXW7, GRAP2, GRB2, ITK, ITPKA, ITPKB, LAT, LCK, LCP2, MAPK1, NCK1, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PAG, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PLCG1, PTPRC, RAF1, RASGRP1, RASGRP2, RASGRP3, RASGRP4, SOS1, SOS2, VAV1, ZAP70 43 CBL(2), CD28(1), CD3D(1), CSK(1), CTLA4(1), DAG1(4), EPHB2(7), GRAP2(2), GRB2(2), ITK(8), ITPKB(4), LCK(2), LCP2(2), MAPK1(2), NFAT5(5), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PLCG1(4), PTPRC(9), RAF1(4), RASGRP1(2), RASGRP2(5), RASGRP3(4), RASGRP4(1), SOS1(5), SOS2(9), VAV1(11), ZAP70(4) 12661658 124 48 121 48 47 29 8 32 8 0 0.41 1.00 235 HSA00785_LIPOIC_ACID_METABOLISM Genes involved in lipoic acid metabolism LIAS, LIPT1, LOC387787 2 LIAS(3), LIPT1(2) 354795 5 4 5 0 0 2 0 2 1 0 0.41 1.00 236 PS1PATHWAY Presenilin is required for gamma-secretase activity to activate Notch signaling; presenilin also inhibits beta-catenin in the Wnt/Frizzled pathway. ADAM17, APC, AXIN1, BTRC, CTNNB1, DLL1, DVL1, FZD1, GSK3B, NOTCH1, PSEN1, RBPSUH, TCF1, WNT1 11 ADAM17(6), AXIN1(1), BTRC(2), CTNNB1(8), DLL1(1), GSK3B(7), PSEN1(3), WNT1(1) 3384248 29 20 29 9 11 7 0 5 6 0 0.41 1.00 237 HSA00660_C5_BRANCHED_DIBASIC_ACID_METABOLISM Genes involved in C5-branched dibasic acid metabolism ILVBL, SUCLA2 2 ILVBL(2), SUCLA2(3) 501186 5 5 5 2 3 1 0 0 1 0 0.41 1.00 238 HSA00471_D_GLUTAMINE_AND_D_GLUTAMATE_METABOLISM Genes involved in D-glutamine and D-glutamate metabolism GLS, GLS2, GLUD1, GLUD2 4 GLS2(2), GLUD1(2), GLUD2(4) 1001674 8 8 8 5 6 1 0 1 0 0 0.41 1.00 239 TIDPATHWAY On ligand binding, interferon gamma receptors stimulate JAK2 kinase to phosphorylate STAT transcription factors, which promote expression of interferon responsive genes. DNAJA3, HSPA1A, IFNG, IFNGR1, IFNGR2, IKBKB, JAK2, LIN7A, NFKB1, NFKBIA, RB1, RELA, TIP-1, TNF, TNFRSF1A, TNFRSF1B, TP53, USH1C, WT1 16 DNAJA3(3), IFNG(1), IFNGR1(2), IFNGR2(1), IKBKB(2), JAK2(6), LIN7A(2), NFKB1(3), RB1(4), RELA(2), TNFRSF1A(1), USH1C(5), WT1(4) 4044561 36 21 36 13 12 4 3 11 4 2 0.41 1.00 240 TCRPATHWAY T cell receptors bind to foreign peptides presented by MHC molecules and induce T cell activation. CALM1, CALM2, CALM3, CD3D, CD3E, CD3G, CD3Z, ELK1, FOS, FYN, GRB2, HRAS, JUN, LAT, LCK, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKBIA, PIK3CA, PIK3R1, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, PTPN7, RAC1, RAF1, RASA1, RELA, SHC1, SOS1, SYT1, TRA@, TRB@, VAV1, ZAP70 40 CD3D(1), CD3G(2), FYN(4), GRB2(2), LCK(2), MAP2K1(3), MAP3K1(6), MAPK3(2), MAPK8(2), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NFKB1(3), PIK3R1(5), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKCA(2), PTPN7(1), RAF1(4), RASA1(5), RELA(2), SHC1(3), SOS1(5), SYT1(1), VAV1(11), ZAP70(4) 10424316 94 42 92 29 36 16 6 17 19 0 0.41 1.00 241 TPOPATHWAY Thrombopoietin binds to its receptor and activates cell growth through the Erk and JNK MAP kinase pathways, protein kinase C, and JAK/STAT activation. CSNK2A1, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAPK3, MPL, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, STAT1, STAT3, STAT5A, STAT5B, THPO 21 CSNK2A1(4), GRB2(2), JAK2(6), MAP2K1(3), MAPK3(2), MPL(1), PIK3R1(5), PLCG1(4), PRKCA(2), RAF1(4), RASA1(5), SHC1(3), SOS1(5), STAT1(6), STAT3(2), STAT5B(2), THPO(1) 6489648 57 29 55 17 16 11 5 16 8 1 0.42 1.00 242 SA_FAS_SIGNALING The TNF-type receptor Fas induces apoptosis on ligand binding. BCL2, CASP3, CASP8, CFL1, CFLAR, P11, PDE6D, TNFRSF6, TNFSF6 5 BCL2(1), CASP3(1), CFL1(1), CFLAR(2), PDE6D(1) 618404 6 6 6 2 2 0 0 4 0 0 0.42 1.00 243 AKTPATHWAY Second messenger PIP3 promotes cell survival by activating the anti-apoptotic kinase AKT. AKT1, BAD, CASP9, CHUK, FOXO1A, FOXO3A, GH1, GHR, HSPCA, MLLT7, NFKB1, NFKBIA, PDPK1, PIK3CA, PIK3R1, PPP2CA, RELA, TNFSF6, YWHAH 13 AKT1(2), BAD(1), CASP9(2), CHUK(4), GH1(1), GHR(6), NFKB1(3), PDPK1(1), PIK3R1(5), PPP2CA(1), RELA(2) 2805002 28 18 28 8 9 5 1 8 5 0 0.42 1.00 244 BOTULINPATHWAY Blockade of Neurotransmitter Relase by Botulinum Toxin CHRM1, CHRNA1, SNAP25, STX1A, VAMP2 5 CHRM1(3), CHRNA1(2), SNAP25(1), STX1A(2) 757122 8 8 8 4 6 1 0 1 0 0 0.42 1.00 245 NTHIPATHWAY Hemophilus influenzae infections activate NF-kB via several pathways, inducing the inflammatory response. CHUK, CREBBP, DUSP1, EP300, IKBKB, IL1B, IL8, MADH3, MADH4, MAP2K3, MAP2K6, MAP3K14, MAP3K7, MAPK11, MAPK14, MYD88, NFKB1, NFKBIA, NR3C1, RELA, TGFBR1, TGFBR2, TLR2, TNF 21 CHUK(4), CREBBP(21), DUSP1(2), EP300(13), IKBKB(2), MAP2K3(2), MAP2K6(2), MAP3K14(2), MAP3K7(2), MAPK14(3), MYD88(1), NFKB1(3), NR3C1(3), RELA(2), TGFBR1(6), TLR2(2) 6662110 70 33 69 25 24 18 3 18 7 0 0.43 1.00 246 PROPANOATE_METABOLISM ABAT, ACACA, ACADL, ACADM, ACADSB, ACAS2, ACAS2L, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH9A1, ECHS1, EHHADH, HADHA, LDHA, LDHB, LDHC, MCEE, MLYCD, MUT, PCCA, PCCB, SDS, SUCLA2, SUCLG1, SUCLG2 31 ABAT(5), ACACA(14), ACADM(3), ACADSB(5), ACAT1(1), ACAT2(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH6A1(3), ALDH9A1(1), ECHS1(2), EHHADH(2), HADHA(2), LDHA(1), LDHB(1), LDHC(2), MCEE(1), MLYCD(1), MUT(3), PCCA(3), PCCB(3), SDS(2), SUCLA2(3), SUCLG1(1) 7714134 88 35 88 16 33 22 0 23 10 0 0.43 1.00 247 BLOOD_CLOTTING_CASCADE F10, F11, F12, F13B, F2, F5, F7, F8, F8A1, F9, FGA, FGB, FGG, LPA, PLG, PLAT, PLAU, PLG, SERPINB2, SERPINE1, SERPINF2, VWF 20 F10(1), F11(4), F12(2), F13B(3), F2(2), F5(14), F7(2), F8(15), F9(6), FGA(11), FGB(1), FGG(4), LPA(9), PLAT(4), PLAU(2), PLG(7), SERPINB2(4), SERPINE1(1), VWF(10) 8145268 102 36 100 31 23 29 3 33 14 0 0.43 1.00 248 HSA00120_BILE_ACID_BIOSYNTHESIS Genes involved in bile acid biosynthesis ACAA1, ACAA2, ACAD8, ACAD9, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1B10, AKR1C4, AKR1D1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, BAAT, CEL, CYP27A1, CYP7A1, HADHB, HSD3B7, LIPA, RDH11, RDH12, RDH13, RDH14, SLC27A5, SOAT1, SOAT2, SRD5A1, SRD5A2 38 ACAA1(2), ACAD9(3), ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), AKR1C4(2), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), BAAT(2), CEL(1), CYP27A1(3), CYP7A1(4), HADHB(1), HSD3B7(2), LIPA(1), RDH12(2), RDH13(1), SLC27A5(3), SOAT1(1), SOAT2(1), SRD5A1(1), SRD5A2(1) 7496503 71 36 71 20 20 21 2 23 5 0 0.43 1.00 249 EIF4PATHWAY The eIF-4F complex recognizes 5' mRNA caps, recruits RNA helicases, and maintains mRNA-ribosome bridging. AKT1, EIF4A1, EIF4A2, EIF4E, EIF4EBP1, EIF4G1, EIF4G2, EIF4G3, FRAP1, GHR, IRS1, MAPK1, MAPK14, MAPK3, MKNK1, PABPC1, PDK2, PDPK1, PIK3CA, PIK3R1, PRKCA, PRKCB1, PTEN, RPS6KB1 20 AKT1(2), EIF4A2(4), EIF4G1(8), EIF4G2(7), EIF4G3(8), GHR(6), IRS1(5), MAPK1(2), MAPK14(3), MAPK3(2), MKNK1(1), PABPC1(3), PDK2(1), PDPK1(1), PIK3R1(5), PRKCA(2), RPS6KB1(3) 5823365 63 32 62 15 15 17 1 22 8 0 0.43 1.00 250 VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS BCAT1, IARS, LARS, LARS2, PDHA1, PDHA2, PDHB 7 BCAT1(1), IARS(5), LARS(4), LARS2(2), PDHA1(4), PDHA2(6), PDHB(2) 2336623 24 15 24 4 9 6 0 5 4 0 0.44 1.00 251 FREEPATHWAY Neutrophils release superoxide to induce lysis in invading bacteria; in neighboring endothelial cells, superoxide dismutase scavenges radicals but produces pro-apoptotic peroxides. GPX1, GSR, GSS, IL8, NFKB1, NOX1, RELA, SOD1, TNF, XDH 10 GPX1(1), GSR(1), GSS(4), NFKB1(3), NOX1(1), RELA(2), XDH(7) 2317098 19 15 19 6 5 7 1 3 3 0 0.44 1.00 252 SALMONELLAPATHWAY Salmonella induces membrane ruffling in infected cells via bacterial proteins including SipA, SipC, and SopE, which alter actin structure. ACTA1, ACTR2, ACTR3, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, CDC42, RAC1, WASF1, WASL 12 ACTA1(3), ACTR2(1), ACTR3(2), ARPC1A(5), ARPC1B(2), ARPC2(1), WASF1(1), WASL(5) 1905526 20 15 20 5 7 5 1 6 1 0 0.44 1.00 253 EGFPATHWAY The epidermal growth factor (EGF) peptide stimulates the EGF receptor to promote cell proliferation via the MAP kinase and Ras pathways. CSNK2A1, EGF, EGFR, ELK1, FOS, GRB2, HRAS, JAK1, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, RAF1, RASA1, SHC1, SOS1, SRF, STAT1, STAT3, STAT5A 24 CSNK2A1(4), EGF(3), EGFR(10), GRB2(2), JAK1(3), MAP2K1(3), MAP3K1(6), MAPK3(2), MAPK8(2), PIK3R1(5), PLCG1(4), PRKCA(2), RAF1(4), RASA1(5), SHC1(3), SOS1(5), SRF(3), STAT1(6), STAT3(2) 8055116 74 36 71 21 27 17 4 18 8 0 0.44 1.00 254 HSA00640_PROPANOATE_METABOLISM Genes involved in propanoate metabolism ABAT, ACACA, ACACB, ACADM, ACAT1, ACAT2, ACSS1, ACSS2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH7A1, ALDH9A1, ECHS1, EHHADH, HADHA, HIBCH, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, LOC283398, MCEE, MLYCD, MUT, PCCA, PCCB, SUCLA2, SUCLG1, SUCLG2 33 ABAT(5), ACACA(14), ACACB(14), ACADM(3), ACAT1(1), ACAT2(2), ACSS1(3), ACSS2(5), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH6A1(3), ALDH7A1(1), ALDH9A1(1), ECHS1(2), EHHADH(2), HADHA(2), LDHA(1), LDHAL6A(2), LDHAL6B(1), LDHB(1), LDHC(2), MCEE(1), MLYCD(1), MUT(3), PCCA(3), PCCB(3), SUCLA2(3), SUCLG1(1) 9246828 98 40 98 23 37 23 0 28 10 0 0.45 1.00 255 SARSPATHWAY The SARS coronavirus has a 30kb RNA genome containing rep, a large gene encoding viral protease Mpro. ANPEP, CKM, EIF4E, FBL, GPT, LDHA, LDHB, LDHC, MAPK14, NCL 10 ANPEP(5), CKM(4), FBL(3), LDHA(1), LDHB(1), LDHC(2), MAPK14(3), NCL(2) 2073625 21 16 21 10 9 4 1 6 1 0 0.45 1.00 256 CALCINEURIN_NF_AT_SIGNALING Mouse genes associated with signal transduction through calcium, calcineurin, and NF-AT. ACTB, BAD, BCL2, CABIN1, CALM1, CALM2, CALM3, CAMK2B, CAMK4, CD3E, CD3G, CD3Z, CD69, CDKN1A, CEBPB, CNR1, CREBBP, CSF2, CSNK2A1, CSNK2B, CTLA4, EGR2, EGR3, EP300, FCER1A, FCGR3A, FKBP1B, FLJ14639, FOS, FOSL1, GAPD, GATA3, GATA4, GRLF1, GSK3A, GSK3B, HRAS, ICOS, IFNA1, IFNB1, IFNG, IL10, IL13, IL1B, IL2, IL2RA, IL3, IL4, IL6, IL8, IL8RA, ITK, JUNB, KPNA5, KPNB3, MAP2K7, MAPK14, MAPK8, MAPK9, MEF2A, MEF2B, MEF2D, MYF5, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB2, NFKBIB, NFKBIE, NPPB, NUP214, OPRD1, P2RX7, PAK1, PIN1, PPIA, PPP3CB, PPP3CC, PPP3R1, PTPRC, RELA, RPL13A, SFN, SLA, SP1, SP3, TGFB1, TNF, TNFSF5, TNFSF6, TRAF2, TRPV6, VAV1, VAV2, VAV3, VEGF, XPO5 92 ACTB(2), BAD(1), BCL2(1), CABIN1(9), CAMK2B(2), CAMK4(2), CD3G(2), CDKN1A(1), CNR1(3), CREBBP(21), CSNK2A1(4), CSNK2B(2), CTLA4(1), EGR2(6), EGR3(2), EP300(13), FCER1A(2), GATA3(4), GATA4(1), GRLF1(7), GSK3A(2), GSK3B(7), ICOS(1), IFNA1(1), IFNB1(1), IFNG(1), IL10(1), IL13(1), IL2(3), IL2RA(2), IL3(3), IL4(3), IL6(1), ITK(8), KPNA5(4), MAPK14(3), MAPK8(2), MAPK9(3), MEF2A(3), MEF2D(1), MYF5(2), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NFKB2(2), NFKBIB(1), NFKBIE(2), NUP214(4), OPRD1(1), P2RX7(2), PAK1(4), PIN1(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PTPRC(9), RELA(2), SLA(4), SP1(2), SP3(2), TGFB1(1), TRAF2(1), TRPV6(9), VAV1(11), VAV2(2), VAV3(10) 21191838 234 64 230 77 84 63 6 53 28 0 0.45 1.00 257 ST_GRANULE_CELL_SURVIVAL_PATHWAY The survival and differentiation of granule cells in the brain is controlled by pro-growth PACAP and pro-apoptotic ceramides. ADPRT, APC, ASAH1, CAMP, CASP3, CERK, CREB1, CREB3, CREB5, CXCL2, DAG1, EPHB2, FOS, GNAQ, IL8RB, ITPKA, ITPKB, JUN, MAP2K4, MAP2K7, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, PACAP 23 ASAH1(3), CASP3(1), CERK(1), CREB1(1), CREB3(2), CREB5(2), DAG1(4), EPHB2(7), GNAQ(3), ITPKB(4), MAPK1(2), MAPK10(4), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3) 5055680 42 26 41 18 12 10 2 12 6 0 0.45 1.00 258 TSP1PATHWAY Thrombospondin-1 (TSP-1) inhibits angiogenesis by inducing caspase-dependent apoptosis in microvascular endothelial cells. CASP3, CD36, FOS, FYN, JUN, MAPK14, THBS1 7 CASP3(1), CD36(1), FYN(4), MAPK14(3), THBS1(8) 1711033 17 14 17 7 5 6 0 4 2 0 0.46 1.00 259 LDLPATHWAY Low density lipoproteins (LDL) are present in blood plasma, contain cholesterol and triglycerides, and contribute to atherogenic plaque formation. ACAT1, CCL2, CSF1, IL6, LDLR, LPL 6 ACAT1(1), CSF1(1), IL6(1), LDLR(4), LPL(6) 1235536 13 10 13 2 3 3 0 5 2 0 0.46 1.00 260 HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM Genes involved in androgen and estrogen metabolism AKR1C4, AKR1D1, ARSD, ARSE, CARM1, CYP11B1, CYP11B2, CYP19A1, HEMK1, HSD11B1, HSD11B2, HSD17B1, HSD17B12, HSD17B2, HSD17B3, HSD17B7, HSD17B8, HSD3B1, HSD3B2, LCMT1, LCMT2, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SRD5A1, SRD5A2, STS, SULT1E1, SULT2A1, SULT2B1, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, WBSCR22 54 AKR1C4(2), ARSD(3), ARSE(2), CARM1(2), CYP11B1(5), CYP11B2(5), CYP19A1(5), HSD11B1(1), HSD17B12(2), HSD17B2(1), HSD17B3(1), HSD17B8(1), HSD3B1(2), LCMT1(1), LCMT2(2), METTL2B(1), METTL6(5), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), SRD5A1(1), SRD5A2(1), STS(6), SULT1E1(1), SULT2A1(1), SULT2B1(1), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2A1(8), UGT2A3(5), UGT2B10(1), UGT2B11(4), UGT2B15(2), UGT2B17(4), UGT2B28(2), UGT2B4(2), UGT2B7(4), WBSCR22(1) 11208616 110 44 109 24 35 26 3 30 16 0 0.46 1.00 261 GLYCOLYSISPATHWAY Glycolysis is an evolutionarily conserved pathway by which one glucose molecule is converted to two pyruvate molecules for a gain of 2 ATP. ALDOB, ENO1, GAPD, GPI, HK1, PFKL, PGAM1, PGK1, PKLR, TPI1 9 ALDOB(5), GPI(1), HK1(6), PFKL(1), PGAM1(3), PGK1(3), TPI1(1) 2039075 20 19 19 10 9 1 0 10 0 0 0.46 1.00 262 AGPCRPATHWAY G-protein coupled receptors (GPCRs) transduce extracellular signals across the plasma membrane; attenuation occurs by signal molecule degradation or receptor-mediated endocytosis. ARRB1, GNAS, GNB1, GNGT1, GPRK2L, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1 11 ARRB1(1), GNAS(6), GNB1(1), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2) 2191467 17 16 17 6 7 1 2 6 1 0 0.46 1.00 263 VEGFPATHWAY Vascular endothelial growth factor (VEGF) is upregulated by hypoxic conditions and promotes normal blood vessel formation and angiogenesis related to tumor growth or cardiac disease. ARNT, EIF1, EIF1A, EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, ELAVL1, FLT1, FLT4, HIF1A, HRAS, KDR, NOS3, PIK3CA, PIK3R1, PLCG1, PRKCA, PRKCB1, PTK2, PXN, SHC1, VEGF, VHL 24 ARNT(4), EIF2B1(2), EIF2B3(2), EIF2B5(5), EIF2S2(1), EIF2S3(1), ELAVL1(3), FLT1(9), FLT4(4), HIF1A(1), KDR(8), NOS3(2), PIK3R1(5), PLCG1(4), PRKCA(2), PTK2(5), SHC1(3) 7355367 61 36 60 21 19 15 2 14 11 0 0.47 1.00 264 HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES Genes involved in glycosphingolipid biosynthesis - globoseries A4GALT, B3GALNT1, B3GALT5, FUT1, FUT2, FUT9, GBGT1, GLA, HEXA, HEXB, NAGA, ST3GAL1, ST3GAL2, ST8SIA1 14 A4GALT(3), B3GALNT1(3), B3GALT5(2), FUT1(1), FUT2(1), FUT9(4), GLA(4), HEXB(1), NAGA(1), ST3GAL1(1), ST3GAL2(1), ST8SIA1(3) 2466179 25 16 25 8 8 6 0 6 5 0 0.47 1.00 265 HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY Genes involved in T cell receptor signaling pathway AKT1, AKT2, AKT3, BCL10, CARD11, CBL, CBLB, CBLC, CD247, CD28, CD3D, CD3E, CD3G, CD4, CD40LG, CD8A, CD8B, CDC42, CDK4, CHP, CHUK, CSF2, CTLA4, FOS, FYN, GRAP2, GRB2, HRAS, ICOS, IFNG, IKBKB, IKBKG, IL10, IL2, IL4, IL5, ITK, JUN, KRAS, LAT, LCK, LCP2, MALT1, MAP3K14, MAP3K8, NCK1, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NRAS, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDCD1, PDK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCQ, PTPN6, PTPRC, RASGRP1, RHOA, SOS1, SOS2, TEC, TNF, VAV1, VAV2, VAV3, ZAP70 88 AKT1(2), AKT2(5), BCL10(3), CARD11(6), CBL(2), CBLB(6), CD247(2), CD28(1), CD3D(1), CD3G(2), CD4(2), CD40LG(6), CD8B(2), CDK4(2), CHUK(4), CTLA4(1), FYN(4), GRAP2(2), GRB2(2), ICOS(1), IFNG(1), IKBKB(2), IL10(1), IL2(3), IL4(3), ITK(8), LCK(2), LCP2(2), MALT1(6), MAP3K14(2), MAP3K8(2), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKCQ(4), PTPN6(4), PTPRC(9), RASGRP1(2), SOS1(5), SOS2(9), TEC(1), VAV1(11), VAV2(2), VAV3(10), ZAP70(4) 22911314 225 66 223 85 84 47 9 60 25 0 0.47 1.00 266 HSA04742_TASTE_TRANSDUCTION Genes involved in taste transduction ACCN1, ADCY4, ADCY6, ADCY8, CACNA1A, CACNA1B, GNAS, GNAT3, GNB1, GNB3, GNG13, GNG3, GRM4, ITPR3, KCNB1, PDE1A, PLCB2, PRKACA, PRKACB, PRKACG, PRKX, PRKY, SCNN1A, SCNN1B, SCNN1G, TAS1R1, TAS1R2, TAS1R3, TAS2R1, TAS2R10, TAS2R13, TAS2R14, TAS2R16, TAS2R3, TAS2R38, TAS2R39, TAS2R4, TAS2R40, TAS2R41, TAS2R42, TAS2R43, TAS2R44, TAS2R45, TAS2R46, TAS2R48, TAS2R49, TAS2R5, TAS2R50, TAS2R60, TAS2R7, TAS2R8, TAS2R9, TRPM5 47 ACCN1(6), ADCY4(9), ADCY6(1), ADCY8(11), CACNA1A(8), CACNA1B(7), GNAS(6), GNAT3(1), GNB1(1), GNB3(3), GNG3(2), GRM4(7), ITPR3(11), KCNB1(2), PDE1A(3), PLCB2(3), PRKACB(1), PRKACG(2), PRKX(2), SCNN1A(3), SCNN1B(3), SCNN1G(2), TAS1R1(6), TAS1R2(5), TAS2R1(1), TAS2R10(3), TAS2R13(3), TAS2R16(1), TAS2R3(1), TAS2R38(2), TAS2R39(2), TAS2R4(1), TAS2R41(1), TAS2R46(1), TAS2R5(1), TAS2R50(4), TAS2R60(1), TAS2R8(1), TAS2R9(1) 13278827 129 53 129 46 52 24 3 40 10 0 0.48 1.00 267 MITOCHONDRIAPATHWAY Pro-apoptotic signaling induces mitochondria to release cytochrome c, which stimulates Apaf-1 to activate caspase 9. APAF1, BAK1, BAX, BCL2, BCL2L1, BID, BIK, BIRC2, BIRC3, BIRC4, CASP3, CASP6, CASP7, CASP8, CASP9, CYCS, DFFA, DFFB, DIABLO, ENDOG, PDCD8 18 APAF1(7), BAK1(1), BAX(1), BCL2(1), BCL2L1(1), BID(1), BIK(1), BIRC2(2), BIRC3(2), CASP3(1), CASP6(1), CASP7(1), CASP9(2), DFFA(2), DFFB(2), DIABLO(1) 2910381 27 21 27 8 8 7 0 10 2 0 0.48 1.00 268 P53HYPOXIAPATHWAY Hypoxia induces p53 accumulation and consequent apoptosis with p53-mediated cell cycle arrest, which is present under conditions of DNA damage. ABCB1, AKT1, ATM, BAX, CDKN1A, CPB2, CSNK1A1, CSNK1D, FHL2, GADD45A, HIC1, HIF1A, HSPA1A, HSPCA, IGFBP3, MAPK8, MDM2, NFKBIB, NQO1, TP53 16 ABCB1(6), AKT1(2), BAX(1), CDKN1A(1), CPB2(1), CSNK1A1(2), CSNK1D(3), FHL2(1), HIF1A(1), IGFBP3(2), MAPK8(2), MDM2(4), NFKBIB(1), NQO1(1) 3096419 28 20 28 4 4 11 1 11 1 0 0.48 1.00 269 CDMACPATHWAY Cadmium 2+ promotes cell proliferation in cultured macrophages by entering the cell via calcium channels and activating the MAP kinase pathway. CUZD1, FOS, HRAS, JUN, MAP2K1, MAPK1, MAPK3, MYC, NFKB1, NFKBIA, PLCB1, PRKCA, PRKCB1, RAF1, RELA, TNF 15 CUZD1(2), MAP2K1(3), MAPK1(2), MAPK3(2), NFKB1(3), PLCB1(8), PRKCA(2), RAF1(4), RELA(2) 3579458 28 20 27 9 11 6 1 7 3 0 0.49 1.00 270 GPCRPATHWAY G-protein coupled receptors activate adenylyl cyclase, which converts ATP to cAMP, to activate second messenger pathways. ADCY1, CALM1, CALM2, CALM3, CREB1, ELK1, FOS, GNAI1, GNAQ, GNAS, GNB1, GNGT1, HRAS, JUN, MAP2K1, MAPK3, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, RAF1, RPS6KA3, SYT1 34 ADCY1(4), CREB1(1), GNAI1(3), GNAQ(3), GNAS(6), GNB1(1), MAP2K1(3), MAPK3(2), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), RAF1(4), RPS6KA3(3), SYT1(1) 8000868 64 39 63 23 30 9 3 14 8 0 0.49 1.00 271 BCRPATHWAY B cell antigen receptors (BCRs) activate tyrosine kinases and transiently increase tyrosine phosphorylation on binding to antigen. BLNK, BTK, CALM1, CALM2, CALM3, CD79A, CD79B, ELK1, FOS, GRB2, HRAS, JUN, LYN, MAP2K1, MAP3K1, MAPK14, MAPK3, MAPK8, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, RAC1, RAF1, SHC1, SOS1, SYK, SYT1, VAV1 34 BTK(6), CD79A(3), GRB2(2), LYN(4), MAP2K1(3), MAP3K1(6), MAPK14(3), MAPK3(2), MAPK8(2), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKCA(2), RAF1(4), SHC1(3), SOS1(5), SYT1(1), VAV1(11) 8861105 81 38 79 23 34 15 4 17 11 0 0.49 1.00 272 SIG_CHEMOTAXIS Genes related to chemotaxis ACTR2, ACTR3, AKT1, AKT2, AKT3, ANGPTL2, ARHGAP1, ARHGAP4, ARHGEF11, BTK, CDC42, CFL1, CFL2, GDI1, GDI2, INPPL1, ITPR1, ITPR2, ITPR3, LIMK1, MYLK, MYLK2, P101-PI3K, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDK1, PIK3CA, PIK3CD, PIK3CG, PIK3R1, PITX2, PPP1R13B, PTEN, RACGAP1, RHO, ROCK1, ROCK2, RPS4X, SAG, WASF1, WASL 42 ACTR2(1), ACTR3(2), AKT1(2), AKT2(5), ANGPTL2(8), ARHGAP4(1), ARHGEF11(9), BTK(6), CFL1(1), GDI1(1), GDI2(1), INPPL1(3), ITPR1(11), ITPR2(12), ITPR3(11), LIMK1(4), MYLK(11), MYLK2(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PIK3CD(2), PIK3CG(12), PIK3R1(5), PITX2(2), PPP1R13B(5), RACGAP1(2), RHO(2), ROCK1(8), ROCK2(2), RPS4X(1), SAG(1), WASF1(1), WASL(5) 15879847 153 55 153 51 52 34 6 43 18 0 0.49 1.00 273 AT1RPATHWAY Binding of angiotensin II to AT1-R activates Ca2+ signaling and the JNK pathway. AGT, AGTR1, ATF2, CALM1, CALM2, CALM3, EGFR, ELK1, GNAQ, GRB2, HRAS, JUN, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAPK1, MAPK3, MAPK8, MEF2A, MEF2B, MEF2C, MEF2D, PAK1, PRKCA, PRKCB1, PTK2, PTK2B, RAC1, RAF1, SHC1, SOS1, SRC, SYT1 32 AGT(4), AGTR1(3), EGFR(10), GNAQ(3), GRB2(2), MAP2K1(3), MAP3K1(6), MAPK1(2), MAPK3(2), MAPK8(2), MEF2A(3), MEF2C(7), MEF2D(1), PAK1(4), PRKCA(2), PTK2(5), PTK2B(1), RAF1(4), SHC1(3), SOS1(5), SRC(3), SYT1(1) 7761291 76 35 74 26 25 20 3 19 9 0 0.50 1.00 274 SMALL_LIGAND_GPCRS C9orf47, CNR1, CNR2, DNMT1, EDG1, EDG2, EDG5, EDG6, MTNR1A, MTNR1B, PTAFR, PTGDR, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, TBXA2R 13 C9orf47(1), CNR1(3), DNMT1(12), MTNR1B(3), PTAFR(1), PTGER2(1), PTGFR(6), PTGIR(1) 2598614 28 19 25 7 11 3 1 12 1 0 0.50 1.00 275 PROSTAGLANDIN_SYNTHESIS_REGULATION ANXA1, ANXA2, ANXA3, ANXA4, ANXA5, ANXA6, ANXA8, CYP11A1, EDN1, EDNRA, EDNRB, HPGD, HSD11B1, HSD11B2, PLA2G4A, PRL, PTGDR, PTGDS, PTGER1, PTGER2, PTGER4, PTGFR, PTGIR, PTGIS, PTGS1, PTGS2, S100A6, SCGB1A1, TBXAS1 27 ANXA2(2), ANXA3(1), ANXA4(4), ANXA5(1), ANXA6(2), CYP11A1(2), EDN1(1), EDNRA(4), EDNRB(7), HSD11B1(1), PLA2G4A(5), PRL(2), PTGER2(1), PTGFR(6), PTGIR(1), PTGIS(4), PTGS1(4), PTGS2(2), TBXAS1(5) 4812483 55 26 55 14 22 7 0 21 5 0 0.50 1.00 276 HSA00252_ALANINE_AND_ASPARTATE_METABOLISM Genes involved in alanine and aspartate metabolism AARS, AARS2, ABAT, ACY3, ADSL, ADSS, ADSSL1, AGXT, AGXT2, ASL, ASNS, ASPA, ASRGL1, ASS1, CAD, CRAT, DARS, DARS2, DDO, DLAT, DLD, GAD1, GAD2, GOT1, GOT2, GPT, GPT2, NARS, NARS2, PC, PDHA1, PDHA2, PDHB 33 AARS(4), AARS2(6), ABAT(5), ADSL(7), ADSS(1), AGXT2(5), ASNS(1), ASPA(3), ASS1(1), CAD(10), CRAT(3), DARS(3), DARS2(2), DDO(2), DLAT(2), GAD1(7), GAD2(4), GOT1(5), GOT2(1), GPT2(2), NARS(2), NARS2(3), PC(3), PDHA1(4), PDHA2(6), PDHB(2) 8866226 94 43 94 23 41 23 0 21 9 0 0.50 1.00 277 HSA00040_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS Genes involved in pentose and glucuronate interconversions AKR1B1, DCXR, GUSB, RPE, UGDH, UGP2, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, XYLB 25 AKR1B1(2), GUSB(2), RPE(2), UGDH(3), UGP2(5), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2A1(8), UGT2A3(5), UGT2B10(1), UGT2B11(4), UGT2B15(2), UGT2B17(4), UGT2B28(2), UGT2B4(2), UGT2B7(4), XYLB(2) 5829064 63 27 62 15 16 17 1 18 11 0 0.50 1.00 278 IL6PATHWAY IL-6 binding to its receptor activates JAK kinases and a variety of transcription factors, with effects in neuronal differentiation, bone loss, and inflammation. CEBPB, CSNK2A1, ELK1, FOS, GRB2, HRAS, IL6, IL6R, IL6ST, JAK1, JAK2, JAK3, JUN, MAP2K1, MAPK3, PTPN11, RAF1, SHC1, SOS1, SRF, STAT3 21 CSNK2A1(4), GRB2(2), IL6(1), IL6R(2), IL6ST(2), JAK1(3), JAK2(6), JAK3(6), MAP2K1(3), MAPK3(2), PTPN11(2), RAF1(4), SHC1(3), SOS1(5), SRF(3), STAT3(2) 5611554 50 28 47 13 16 10 4 14 5 1 0.51 1.00 279 ST_DICTYOSTELIUM_DISCOIDEUM_CAMP_CHEMOTAXIS_PATHWAY The fungus Dictyostelium discoideum is a model system for cytoskeletal organization during chemotaxis. ACTR2, ACTR3, AKT1, ANGPTL2, BF, DAG1, DGKA, ETFA, GCA, ITGA9, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, MAP2K1, MAPK1, MAPK3, NR1I3, PAK1, PDE3A, PDE3B, PI3, PIK3C2G, PIK3CA, PIK3CD, PIK3R1, PLDN, PSME1, RIPK3, RPS4X, SGCB, VASP 31 ACTR2(1), ACTR3(2), AKT1(2), ANGPTL2(8), DAG1(4), DGKA(1), ETFA(2), ITGA9(4), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), MAP2K1(3), MAPK1(2), MAPK3(2), NR1I3(2), PAK1(4), PDE3A(5), PDE3B(2), PIK3C2G(7), PIK3CD(2), PIK3R1(5), PLDN(1), RIPK3(4), RPS4X(1), VASP(3) 11091427 105 44 105 34 38 21 6 22 18 0 0.51 1.00 280 HSA00020_CITRATE_CYCLE Genes involved in citrate cycle (TCA cycle) ACLY, ACO1, ACO2, CLYBL, CS, DLD, DLST, FH, IDH1, IDH2, IDH3A, IDH3B, IDH3G, LOC283398, LOC441996, MDH1, MDH2, OGDH, OGDHL, PC, PCK1, PCK2, SDHA, SDHB, SDHC, SDHD, SUCLA2, SUCLG1, SUCLG2 27 ACLY(4), ACO1(3), ACO2(2), CLYBL(5), FH(1), IDH1(3), IDH2(7), IDH3A(1), IDH3G(2), MDH1(1), MDH2(1), OGDH(4), OGDHL(8), PC(3), PCK2(3), SDHA(5), SDHB(2), SDHD(1), SUCLA2(3), SUCLG1(1) 6978907 60 36 60 19 27 14 0 14 5 0 0.52 1.00 281 HSA04912_GNRH_SIGNALING_PATHWAY Genes involved in GnRH signaling pathway ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ATF4, CACNA1C, CACNA1D, CACNA1F, CACNA1S, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CDC42, CGA, EGFR, ELK1, FSHB, GNA11, GNAQ, GNAS, GNRH1, GNRH2, GNRHR, GRB2, HBEGF, HRAS, ITPR1, ITPR2, ITPR3, JUN, KRAS, LHB, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K1, MAP3K2, MAP3K3, MAP3K4, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK7, MAPK8, MAPK9, MMP14, MMP2, NRAS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB1, PLCB2, PLCB3, PLCB4, PLD1, PLD2, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCD, PRKX, PRKY, PTK2B, RAF1, SOS1, SOS2, SRC 92 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), CACNA1C(10), CACNA1D(7), CACNA1F(12), CACNA1S(10), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CGA(1), EGFR(10), FSHB(1), GNA11(1), GNAQ(3), GNAS(6), GNRHR(4), GRB2(2), HBEGF(1), ITPR1(11), ITPR2(12), ITPR3(11), LHB(1), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAP3K2(2), MAP3K3(2), MAP3K4(15), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK7(3), MAPK8(2), MAPK9(3), MMP14(4), MMP2(2), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLD1(8), PLD2(1), PRKACB(1), PRKACG(2), PRKCA(2), PRKCD(3), PRKX(2), PTK2B(1), RAF1(4), SOS1(5), SOS2(9), SRC(3) 30039013 295 75 292 115 116 63 10 82 24 0 0.52 1.00 282 SIG_BCR_SIGNALING_PATHWAY Members of the BCR signaling pathway AKT1, AKT2, AKT3, BAD, BCL2, BCR, BLNK, BTK, CD19, CD22, CD81, CR2, CSK, DAG1, FLOT1, FLOT2, GRB2, GSK3A, GSK3B, INPP5D, ITPR1, ITPR2, ITPR3, LYN, MAP4K1, MAPK1, MAPK3, NFATC1, NFATC2, NR0B2, PDK1, PIK3CA, PIK3CD, PIK3R1, PLCG2, PPP1R13B, PPP3CA, PPP3CB, PPP3CC, PTPRC, RAF1, SHC1, SOS1, SOS2, SYK, VAV1 45 AKT1(2), AKT2(5), BAD(1), BCL2(1), BCR(6), BTK(6), CD19(3), CD22(8), CR2(9), CSK(1), DAG1(4), FLOT1(3), GRB2(2), GSK3A(2), GSK3B(7), INPP5D(2), ITPR1(11), ITPR2(12), ITPR3(11), LYN(4), MAP4K1(2), MAPK1(2), MAPK3(2), NFATC1(1), NFATC2(3), PIK3CD(2), PIK3R1(5), PLCG2(9), PPP1R13B(5), PPP3CA(1), PPP3CB(4), PPP3CC(3), PTPRC(9), RAF1(4), SHC1(3), SOS1(5), SOS2(9), VAV1(11) 16756538 180 56 177 48 68 39 7 41 25 0 0.52 1.00 283 PHENYLALANINE_METABOLISM ABP1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, DDC, EPX, GOT1, GOT2, HPD, LPO, MAOA, MAOB, MPO, PRDX1, PRDX2, PRDX5, PRDX6, TAT, TPO 22 ABP1(1), ALDH1A3(4), ALDH3A1(2), ALDH3B1(2), ALDH3B2(1), AOC2(4), AOC3(4), DDC(1), EPX(6), GOT1(5), GOT2(1), HPD(3), LPO(2), MAOA(2), MPO(3), PRDX6(2), TAT(3), TPO(8) 5142775 54 33 53 16 29 12 0 10 3 0 0.53 1.00 284 HSA05050_DENTATORUBROPALLIDOLUYSIAN_ATROPHY Genes involved in dentatorubropallidoluysian atrophy (DRPLA) ATN1, BAIAP2, CASP1, CASP3, CASP7, CASP8, GAPDH, INS, INSR, ITCH, MAGI1, MAGI2, RERE, WWP1, WWP2 14 ATN1(3), CASP1(2), CASP3(1), CASP7(1), INSR(5), ITCH(3), MAGI1(10), MAGI2(6), RERE(3), WWP1(5), WWP2(4) 5217887 43 32 43 19 15 9 0 13 6 0 0.53 1.00 285 ST_G_ALPHA_I_PATHWAY Gi and Go proteins are members of the same family that transduce cellular signals through both their alpha and beta subunits. AKT1, AKT2, AKT3, ASAH1, BF, BRAF, DAG1, DRD2, EGFR, EPHB2, GRB2, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, KCNJ3, KCNJ5, KCNJ9, MAPK1, PI3, PIK3CB, PITX2, PLCB1, PLCB2, PLCB3, PLCB4, RAF1, RAP1GA1, RGS20, SHC1, SOS1, SOS2, SRC, STAT3, TERF2IP 33 AKT1(2), AKT2(5), ASAH1(3), DAG1(4), DRD2(3), EGFR(10), EPHB2(7), GRB2(2), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), KCNJ3(6), KCNJ5(3), KCNJ9(2), MAPK1(2), PIK3CB(2), PITX2(2), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), RAF1(4), RGS20(3), SHC1(3), SOS1(5), SOS2(9), SRC(3), STAT3(2), TERF2IP(1) 13480958 144 52 141 48 58 30 7 38 11 0 0.53 1.00 286 METHANE_METABOLISM ADH5, ATP6V0C, SHMT1, CAT, EPX, LPO, MPO, PRDX1, PRDX2, PRDX5, PRDX6, SHMT1, SHMT2, TPO 13 ADH5(1), CAT(2), EPX(6), LPO(2), MPO(3), PRDX6(2), SHMT1(1), SHMT2(2), TPO(8) 2777048 27 21 26 9 17 3 0 4 3 0 0.54 1.00 287 G_PROTEIN_SIGNALING ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, AKAP1, AKAP10, AKAP11, AKAP12, AKAP2, PALM2_AKAP2, AKAP3, AKAP4, AKAP5, AKAP6, AKAP7, AKAP8, AKAP9, ARHGEF1, CALM1, CALM2, CALM3, CHMP1B, GNA11, GNA12, GNA13, GNA14, GNA15, GNAI2, GNAI3, GNAL, GNAO1, GNAQ, GNAZ, GNB1, GNB2, GNB3, GNB5, GNG10, GNG10, LOC552891, GNG12, GNG13, GNG3, GNG4, GNG5, GNG7, GNGT1, GNGT2, HRAS, IL18BP, ITPR1, KCNJ3, KRAS, MGC11266, NRAS, PALM2, PALM2_AKAP2, PALM2_AKAP2, PDE1A, PDE1B, PDE1C, PDE4A, PDE4B, PDE4C, PDE4D, PDE7A, PDE7B, PDE8A, PDE8B, PLCB3, PPP3CA, PPP3CC, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCQ, PRKCZ, PRKD1, PRKD3, RHOA, RRAS, SARA1, SLC9A1, USP5 89 ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), AKAP10(2), AKAP11(4), AKAP12(11), AKAP3(6), AKAP4(2), AKAP5(3), AKAP6(10), AKAP7(2), AKAP8(3), AKAP9(20), ARHGEF1(4), GNA11(1), GNA12(2), GNA13(2), GNA14(5), GNA15(3), GNAL(3), GNAO1(5), GNAQ(3), GNAZ(1), GNB1(1), GNB3(3), GNB5(1), GNG3(2), GNG7(1), ITPR1(11), KCNJ3(6), PDE1A(3), PDE1B(2), PDE1C(7), PDE4A(4), PDE4B(2), PDE4C(2), PDE4D(3), PDE7A(3), PDE7B(3), PDE8A(1), PDE8B(6), PLCB3(3), PPP3CA(1), PPP3CC(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCI(4), PRKCQ(4), PRKD1(10), PRKD3(6), SLC9A1(2), USP5(3) 27230201 268 70 264 108 106 57 9 65 30 1 0.54 1.00 288 SIG_IL4RECEPTOR_IN_B_LYPHOCYTES Genes related to IL4 rceptor signaling in B lymphocytes AKT1, AKT2, AKT3, BAD, BCL2, GRB2, GSK3A, GSK3B, IL4R, IRS1, IRS2, JAK1, JAK3, MAP4K1, MAPK1, MAPK3, PDK1, PIK3CA, PIK3CD, PIK3R1, PPP1R13B, RAF1, SHC1, SOCS1, SOS1, SOS2, STAT6 26 AKT1(2), AKT2(5), BAD(1), BCL2(1), GRB2(2), GSK3A(2), GSK3B(7), IL4R(1), IRS1(5), JAK1(3), JAK3(6), MAP4K1(2), MAPK1(2), MAPK3(2), PIK3CD(2), PIK3R1(5), PPP1R13B(5), RAF1(4), SHC1(3), SOS1(5), SOS2(9), STAT6(2) 7998198 76 38 73 20 24 16 3 19 14 0 0.54 1.00 289 ETCPATHWAY Energy is extracted from carbohydrates via oxidation and transferred to the mitochondrial electron transport chain, which couples ATP synthesis to the reduction of oxygen to water. ATP5A1, CYCS, GPD2, MTCO1, NDUFA1, SDHA, SDHB, SDHC, SDHD, UQCRC1 9 ATP5A1(2), GPD2(3), NDUFA1(1), SDHA(5), SDHB(2), SDHD(1), UQCRC1(2) 1524607 16 11 16 3 5 5 0 5 1 0 0.54 1.00 290 HSA03020_RNA_POLYMERASE Genes involved in RNA polymerase POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, ZNRD1 23 POLR1A(7), POLR1B(6), POLR1C(2), POLR1D(2), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLR3A(7), POLR3B(6), POLR3GL(1), POLR3H(1) 5436528 47 28 47 9 17 17 1 9 3 0 0.54 1.00 291 GLOBOSIDE_METABOLISM A4GALT, FUT1, FUT2, FUT9, GBGT1, GLA, HEXA, HEXB, NAGA, SIAT4A, SIAT4B, ST3GAL1, ST3GAL2, ST3GAL4, ST8SIA1 13 A4GALT(3), FUT1(1), FUT2(1), FUT9(4), GLA(4), HEXB(1), NAGA(1), ST3GAL1(1), ST3GAL2(1), ST3GAL4(2), ST8SIA1(3) 2323554 22 15 22 8 5 6 0 6 5 0 0.54 1.00 292 CARM_ERPATHWAY Methyltransferase CARM1 methylates CBP and co-activates estrogen receptors via Grip1. BRCA1, CARM1, CCND1, CREBBP, EP300, ERCC3, ESR1, GRIP1, GTF2A1, GTF2E1, GTF2F1, HDAC1, HDAC2, HDAC3, HDAC4, HDAC5, HDAC6, HIST2H3C, MEF2C, NCOR2, NR0B1, NRIP1, PELP1, POLR2A, PPARBP, PPARGC1, REA, SHARP, SRA1, TBP 25 BRCA1(5), CARM1(2), CREBBP(21), EP300(13), ERCC3(6), ESR1(12), GRIP1(7), GTF2A1(2), GTF2E1(5), GTF2F1(3), HDAC1(2), HDAC2(2), HDAC3(2), HDAC4(5), HDAC5(1), HDAC6(4), MEF2C(7), NCOR2(2), NR0B1(2), NRIP1(5), PELP1(2), POLR2A(6), TBP(1) 11062438 117 46 117 24 45 34 2 21 15 0 0.55 1.00 293 PMLPATHWAY Ring-shaped PML nuclear bodies regulate transcription and are required co-activators in p53- and DAXX-mediated apoptosis. CREBBP, DAXX, HRAS, PAX3, PML, PRAM-1, RARA, RB1, SIRT1, SP100, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TP53, UBL1 12 CREBBP(21), PAX3(5), PML(3), RB1(4), SIRT1(4), SP100(4), TNFRSF1A(1) 4246522 42 24 41 18 13 12 3 8 5 1 0.55 1.00 294 AMINOACYL_TRNA_BIOSYNTHESIS AARS, CARS, DARS, EPRS, FARS2, FARSLB, GARS, HARS, HARSL, IARS, KARS, LARS, LARS2, MARS, MARS2, NARS, QARS, RARS, SARS, TARS, WARS, WARS2, YARS 21 AARS(4), CARS(5), DARS(3), EPRS(10), FARS2(4), GARS(3), HARS(2), IARS(5), KARS(3), LARS(4), LARS2(2), MARS(3), NARS(2), QARS(7), RARS(2), SARS(1), TARS(3), WARS(1), WARS2(2), YARS(2) 7445501 68 33 68 11 27 15 1 18 7 0 0.55 1.00 295 ALKALOID_BIOSYNTHESIS_II ABP1, AOC2, AOC3, CES1, ESD 5 ABP1(1), AOC2(4), AOC3(4), CES1(4) 1372948 13 12 13 4 6 3 0 4 0 0 0.55 1.00 296 HSA03050_PROTEASOME Genes involved in proteasome PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMC2, PSMC3, PSMD1, PSMD11, PSMD12, PSMD13, PSMD2, PSMD6 22 PSMA1(1), PSMA2(1), PSMA3(2), PSMA4(2), PSMA5(1), PSMB2(2), PSMB5(2), PSMB6(2), PSMC2(1), PSMC3(3), PSMD1(4), PSMD11(3), PSMD12(2), PSMD13(1), PSMD2(3), PSMD6(2) 3732013 32 22 32 15 10 7 2 10 3 0 0.55 1.00 297 CK1PATHWAY Caseine kinase 1 (CK1) and cdk5 phosphorylate DARPP32 in the dopamine signaling pathway. CDK5, CDK5R1, CSNK1D, DRD1, DRD2, GRM1, PLCB1, PPP1CA, PPP1R1B, PPP2CA, PPP3CA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 17 CDK5R1(1), CSNK1D(3), DRD1(1), DRD2(3), GRM1(9), PLCB1(8), PPP1R1B(1), PPP2CA(1), PPP3CA(1), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 3680070 35 25 35 13 14 7 1 8 5 0 0.55 1.00 298 IFNGPATHWAY IFN gamma signaling pathway IFNG, IFNGR1, IFNGR2, JAK1, JAK2, STAT1 6 IFNG(1), IFNGR1(2), IFNGR2(1), JAK1(3), JAK2(6), STAT1(6) 1919055 19 13 18 6 7 1 2 7 1 1 0.55 1.00 299 HSA00561_GLYCEROLIPID_METABOLISM Genes involved in glycerolipid metabolism ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AGK, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, AKR1A1, AKR1B1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, CEL, DAK, DGAT1, DGAT2, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, GK, GK2, GLA, GLB1, GPAM, LCT, LIPA, LIPC, LIPF, LIPG, LPL, LYCAT, MGLL, PNLIP, PNLIPRP1, PNLIPRP2, PNPLA3, PPAP2A, PPAP2B, PPAP2C, UGCGL1, UGCGL2 54 ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), AGK(2), AGPAT1(1), AGPAT3(3), AGPAT4(6), AGPAT6(1), AKR1B1(2), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), CEL(1), DAK(3), DGAT2(3), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKI(6), DGKZ(2), GK(3), GK2(3), GLA(4), GLB1(3), GPAM(2), LCT(15), LIPA(1), LIPC(3), LIPF(1), LIPG(2), LPL(6), PNLIP(5), PNLIPRP1(4), PNLIPRP2(1), PNPLA3(4), PPAP2B(1) 13623017 154 50 153 50 49 32 2 59 12 0 0.56 1.00 300 MTA3PATHWAY The estrogen receptor regulates proliferation in mammary epithelia via MTA3 activation; loss of either protein is implicated in breast cancer. ALDOA, CTSD, ESR1, GAPD, GREB1, HSPB1, HSPB2, MTA1, MTA3, PDZK1, TUBA1, TUBA2, TUBA3, TUBA4, TUBA6, TUBA8 10 ALDOA(1), CTSD(3), ESR1(12), GREB1(10), HSPB2(1), MTA1(1), PDZK1(1), TUBA8(1) 2515789 30 18 30 8 10 6 0 9 5 0 0.56 1.00 301 HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC Genes involved in pathogenic Escherichia coli infection - EHEC ABL1, ACTB, ACTG1, ARHGEF2, ARPC5, ARPC5L, CD14, CDC42, CDH1, CLDN1, CTNNB1, CTTN, EZR, FYN, HCLS1, ITGB1, KRT18, LOC643224, LOC654264, LY96, NCK1, NCK2, NCL, OCLN, PRKCA, RHOA, ROCK1, ROCK2, TLR4, TLR5, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8, WAS, WASL, YWHAQ, YWHAZ 50 ABL1(4), ACTB(2), ARHGEF2(4), ARPC5(1), ARPC5L(1), CD14(1), CDH1(4), CTNNB1(8), EZR(2), FYN(4), HCLS1(7), ITGB1(6), KRT18(2), LY96(2), NCL(2), OCLN(1), PRKCA(2), ROCK1(8), ROCK2(2), TLR4(7), TLR5(3), TUBA3C(9), TUBA3D(2), TUBA3E(4), TUBA4A(1), TUBA8(1), TUBAL3(3), TUBB(1), TUBB1(2), TUBB2A(1), TUBB2B(3), TUBB3(1), TUBB4(2), TUBB4Q(2), TUBB6(3), TUBB8(2), WAS(1), WASL(5), YWHAQ(1) 12024242 117 46 116 44 43 23 1 38 12 0 0.56 1.00 302 HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC Genes involved in pathogenic Escherichia coli infection - EPEC ABL1, ACTB, ACTG1, ARHGEF2, ARPC5, ARPC5L, CD14, CDC42, CDH1, CLDN1, CTNNB1, CTTN, EZR, FYN, HCLS1, ITGB1, KRT18, LOC643224, LOC654264, LY96, NCK1, NCK2, NCL, OCLN, PRKCA, RHOA, ROCK1, ROCK2, TLR4, TLR5, TUBA1A, TUBA1B, TUBA1C, TUBA3C, TUBA3D, TUBA3E, TUBA4A, TUBA8, TUBAL3, TUBB, TUBB1, TUBB2A, TUBB2B, TUBB2C, TUBB3, TUBB4, TUBB4Q, TUBB6, TUBB8, WAS, WASL, YWHAQ, YWHAZ 50 ABL1(4), ACTB(2), ARHGEF2(4), ARPC5(1), ARPC5L(1), CD14(1), CDH1(4), CTNNB1(8), EZR(2), FYN(4), HCLS1(7), ITGB1(6), KRT18(2), LY96(2), NCL(2), OCLN(1), PRKCA(2), ROCK1(8), ROCK2(2), TLR4(7), TLR5(3), TUBA3C(9), TUBA3D(2), TUBA3E(4), TUBA4A(1), TUBA8(1), TUBAL3(3), TUBB(1), TUBB1(2), TUBB2A(1), TUBB2B(3), TUBB3(1), TUBB4(2), TUBB4Q(2), TUBB6(3), TUBB8(2), WAS(1), WASL(5), YWHAQ(1) 12024242 117 46 116 44 43 23 1 38 12 0 0.56 1.00 303 EPONFKBPATHWAY The cytokine erythropoietin (Epo) prevents stress-induced neuronal apoptosis by stimulating anti-apoptotic pathways through JAK2 kinase and NF-kB. ARNT, CDKN1A, EPO, EPOR, GRIN1, HIF1A, JAK2, NFKB1, NFKBIA, RELA, SOD2 11 ARNT(4), CDKN1A(1), GRIN1(1), HIF1A(1), JAK2(6), NFKB1(3), RELA(2), SOD2(4) 2988368 22 18 22 5 6 6 1 6 2 1 0.56 1.00 304 BETA_ALANINE_METABOLISM ABAT, ABP1, ACADL, ACADM, ACADSB, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, AOC2, AOC3, CNDP1, DPYD, DPYS, ECHS1, EHHADH, GAD1, GAD2, HADHA, MLYCD, SDS, SMS, UPB1 27 ABAT(5), ABP1(1), ACADM(3), ACADSB(5), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), AOC2(4), AOC3(4), CNDP1(3), DPYD(8), DPYS(6), ECHS1(2), EHHADH(2), GAD1(7), GAD2(4), HADHA(2), MLYCD(1), SDS(2), SMS(2), UPB1(3) 6763780 92 34 92 16 34 25 1 25 7 0 0.56 1.00 305 HSA00590_ARACHIDONIC_ACID_METABOLISM Genes involved in arachidonic acid metabolism AKR1C3, ALOX12, ALOX12B, ALOX15, ALOX15B, ALOX5, CBR1, CBR3, CYP2B6, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2J2, CYP2U1, CYP4A11, CYP4A22, CYP4F2, CYP4F3, DHRS4, EPHX2, GGT1, GGTL3, GGTL4, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, LTA4H, LTC4S, PGDS, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PTGDS, PTGES, PTGES2, PTGIS, PTGS1, PTGS2, TBXAS1 50 ALOX12(2), ALOX12B(2), ALOX15B(5), ALOX5(4), CYP2C19(4), CYP2C8(2), CYP2C9(4), CYP2E1(5), CYP2J2(3), CYP2U1(1), CYP4A11(2), CYP4A22(2), CYP4F2(8), CYP4F3(2), EPHX2(1), GPX1(1), GPX2(2), GPX3(1), GPX5(4), GPX6(2), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PTGIS(4), PTGS1(4), PTGS2(2), TBXAS1(5) 8922607 81 41 81 28 30 12 0 34 5 0 0.57 1.00 306 GLEEVECPATHWAY The drug Gleevec specifically targets the abnormal bcr-abl protein, an apoptosis inhibitor present in chronic myeloid leukemia. AKT1, BCL2, BCR, CRKL, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAP2K4, MAP3K1, MAPK3, MAPK8, MYC, PIK3CA, PIK3R1, RAF1, SOS1, STAT1, STAT5A, STAT5B 20 AKT1(2), BCL2(1), BCR(6), CRKL(2), GRB2(2), JAK2(6), MAP2K1(3), MAP3K1(6), MAPK3(2), MAPK8(2), PIK3R1(5), RAF1(4), SOS1(5), STAT1(6), STAT5B(2) 5782025 54 28 53 13 20 12 6 10 5 1 0.57 1.00 307 ST_TYPE_I_INTERFERON_PATHWAY Type I interferon is an antiviral cytokine that induces a JAK-STAT type pathway leading to ISGF3 activation and a cellular antiviral response. IFNAR1, IFNB1, ISGF3G, JAK1, PTPRU, REG1A, STAT1, STAT2, TYK2 8 IFNAR1(3), IFNB1(1), JAK1(3), PTPRU(6), REG1A(3), STAT1(6), STAT2(5), TYK2(1) 2929916 28 19 26 7 13 6 1 5 3 0 0.57 1.00 308 PYK2PATHWAY Pyk2 and Rac1 stimulate the JNK cascade and activate MKK3, which activates p38. BCAR1, CALM1, CALM2, CALM3, CRKL, GNAQ, GRB2, HRAS, JUN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP3K1, MAPK1, MAPK14, MAPK3, MAPK8, PAK1, PLCG1, PRKCA, PRKCB1, PTK2B, RAC1, RAF1, SHC1, SOS1, SRC, SYT1 27 CRKL(2), GNAQ(3), GRB2(2), MAP2K1(3), MAP2K3(2), MAP3K1(6), MAPK1(2), MAPK14(3), MAPK3(2), MAPK8(2), PAK1(4), PLCG1(4), PRKCA(2), PTK2B(1), RAF1(4), SHC1(3), SOS1(5), SRC(3), SYT1(1) 6489532 54 29 52 20 15 13 4 15 7 0 0.57 1.00 309 STATIN_PATHWAY_PHARMGKB ABCA1, APOA1, APOA1, LOC440837, APOA4, APOC1, APOC2, APOC3, APOC3, LOC440838, APOE, CETP, CYP7A1, DGAT1, HMGCR, LCAT, LDLR, LIPC, LPL, LRP1, SCARB1, SOAT1 16 ABCA1(17), APOE(1), CETP(6), CYP7A1(4), HMGCR(2), LCAT(1), LDLR(4), LIPC(3), LPL(6), LRP1(14), SOAT1(1) 5920255 59 31 59 18 22 14 2 16 5 0 0.57 1.00 310 PTC1PATHWAY The binding of extracellular signaling protein Sonic hedgehog to the Patched receptor (Ptc1) allows progression through G1 and may inhibit the G2/M transition. CCNB1, CCNH, CDC2, CDC25A, CDC25B, CDC25C, CDK7, MNAT1, PTCH, SHH, XPO1 9 CCNB1(2), CCNH(2), CDC25A(2), CDC25B(5), CDC25C(3), CDK7(1), MNAT1(1), XPO1(1) 2033422 17 12 17 7 5 5 0 6 1 0 0.57 1.00 311 TCRMOLECULE T Cell Receptor and CD3 Complex CD3D, CD3E, CD3G, CD3Z, TRA@, TRB@ 3 CD3D(1), CD3G(2) 267557 3 2 3 1 1 1 0 0 1 0 0.57 1.00 312 PROTEASOME PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB10, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMB8, PSMB9 17 PSMA1(1), PSMA2(1), PSMA3(2), PSMA4(2), PSMA5(1), PSMB2(2), PSMB5(2), PSMB6(2), PSMB9(4) 1978560 17 14 17 6 6 3 2 3 3 0 0.57 1.00 313 ST_INTERFERON_GAMMA_PATHWAY The interferon gamma pathway resembles the JAK-STAT pathway and activates STAT transcription factors. CISH, IFNG, IFNGR1, JAK1, JAK2, PLA2G2A, PTPRU, REG1A, STAT1, STATIP1 9 IFNG(1), IFNGR1(2), JAK1(3), JAK2(6), PTPRU(6), REG1A(3), STAT1(6) 2691658 27 16 25 9 11 4 2 7 2 1 0.58 1.00 314 HSA00130_UBIQUINONE_BIOSYNTHESIS Genes involved in ubiquinone biosynthesis COQ2, COQ3, COQ5, COQ6, COQ7, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, NDUFA12, NDUFA13, NDUFB11 8 COQ2(2), COQ6(1), COQ7(1), NDUFA12(2), NDUFA13(1) 970068 7 7 7 2 1 2 0 2 2 0 0.58 1.00 315 P53PATHWAY p53 induces cell cycle arrest or apoptosis under conditions of DNA damage. APAF1, ATM, BAX, BCL2, CCND1, CCNE1, CDK2, CDK4, CDKN1A, E2F1, GADD45A, MDM2, PCNA, RB1, TIMP3, TP53 14 APAF1(7), BAX(1), BCL2(1), CCNE1(3), CDK2(2), CDK4(2), CDKN1A(1), MDM2(4), PCNA(2), RB1(4), TIMP3(2) 2627691 29 17 29 6 7 6 0 14 1 1 0.58 1.00 316 HSA00750_VITAMIN_B6_METABOLISM Genes involved in vitamin B6 metabolism AOX1, PDXK, PDXP, PNPO, PSAT1 5 AOX1(5), PNPO(1), PSAT1(3) 1131397 9 8 9 5 4 4 0 0 1 0 0.59 1.00 317 TCAPOPTOSISPATHWAY HIV infection upregulates Fas ligand in macrophages and CD4 in helper T cells, leading to widespread Fas-induced T cell apoptosis. CCR5, CD28, CD3D, CD3E, CD3G, CD3Z, CD4, TNFRSF6, TNFSF6, TRA@, TRB@ 6 CCR5(1), CD28(1), CD3D(1), CD3G(2), CD4(2) 647850 7 6 8 5 2 4 0 0 1 0 0.59 1.00 318 PEPIPATHWAY Proepithelin (PEPI) induces epithelial cells to secrete IL-8, which promotes elastase secretion by neutrophils. ELA1, ELA2, ELA2A, ELA2B, ELA3B, GRN, IL8, SLPI 3 GRN(2) 394729 2 2 2 3 0 0 0 1 1 0 0.59 1.00 319 ST_PAC1_RECEPTOR_PATHWAY The signaling peptide PACAP binds to its receptor, PAC1R, which activates adenylyl cyclase and phospholipase C. ASAH1, CAMP, DAG1, GAS, GNAQ, ITPKA, ITPKB, PACAP 6 ASAH1(3), DAG1(4), GNAQ(3), ITPKB(4) 1393084 14 10 14 5 5 3 2 2 2 0 0.59 1.00 320 EEA1PATHWAY The FYVE-finger proteins EEA1 and HRS are localized to endosome membranes and regulate sorting and ubiquitination in the vesicle transport system. EEA1, EGF, EGFR, HGS, RAB5A, TF, TFRC 7 EEA1(5), EGF(3), EGFR(10), TF(7), TFRC(2) 2993749 27 18 27 6 14 4 1 5 2 1 0.59 1.00 321 GPCRDB_CLASS_A_RHODOPSIN_LIKE2 CYSLTR1, CYSLTR2, GPR109B, GPR161, GPR171, GPR18, GPR34, GPR39, GPR41, GPR42, GPR45, GPR65, GPR68, GPR75, GPR81, LYPDC1 13 CYSLTR1(3), CYSLTR2(3), GPR161(5), GPR171(3), GPR34(5), GPR39(2), GPR45(4), GPR75(1) 2298965 26 17 26 9 12 4 1 7 2 0 0.59 1.00 322 HSA00510_N_GLYCAN_BIOSYNTHESIS Genes involved in N-glycan biosynthesis ALG1, ALG10, ALG10B, ALG11, ALG12, ALG13, ALG14, ALG2, ALG3, ALG5, ALG6, ALG8, ALG9, B4GALT1, B4GALT2, B4GALT3, DAD1, DDOST, DHDDS, DOLPP1, DPAGT1, DPM1, FUT8, GANAB, GCS1, MAN1A1, MAN1A2, MAN1B1, MAN1C1, MAN2A1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, MGAT5B, RFT1, RPN1, RPN2, ST6GAL1, STT3B 41 ALG10(3), ALG10B(4), ALG11(1), ALG12(2), ALG13(1), ALG2(3), ALG3(1), ALG5(2), ALG6(3), ALG8(5), ALG9(1), B4GALT1(5), B4GALT2(3), B4GALT3(6), DAD1(2), DDOST(2), DPAGT1(1), DPM1(1), FUT8(1), GANAB(4), MAN1A1(4), MAN1A2(2), MAN1B1(2), MAN1C1(4), MAN2A1(8), MGAT1(1), MGAT3(2), MGAT4A(2), MGAT4B(1), MGAT5(3), MGAT5B(2), ST6GAL1(1), STT3B(4) 9897871 87 44 86 17 30 17 2 33 5 0 0.60 1.00 323 HSA00440_AMINOPHOSPHONATE_METABOLISM Genes involved in aminophosphonate metabolism CARM1, CHPT1, HEMK1, LCMT1, LCMT2, METTL2B, METTL6, PCYT1A, PCYT1B, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, WBSCR22 16 CARM1(2), LCMT1(1), LCMT2(2), METTL2B(1), METTL6(5), PCYT1A(4), PCYT1B(5), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), WBSCR22(1) 3297159 31 21 31 14 9 9 0 11 2 0 0.60 1.00 324 HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES Genes involved in glycosphingolipid biosynthesis - ganglioseries B3GALT4, B4GALNT1, GLB1, HEXA, HEXB, LCT, SLC33A1, ST3GAL1, ST3GAL2, ST3GAL5, ST6GALNAC3, ST6GALNAC4, ST6GALNAC5, ST6GALNAC6, ST8SIA1, ST8SIA5 16 B3GALT4(1), B4GALNT1(3), GLB1(3), HEXB(1), LCT(15), SLC33A1(1), ST3GAL1(1), ST3GAL2(1), ST6GALNAC3(3), ST6GALNAC4(1), ST6GALNAC5(4), ST6GALNAC6(3), ST8SIA1(3), ST8SIA5(4) 3840766 44 25 44 15 20 8 2 9 5 0 0.60 1.00 325 HSA00591_LINOLEIC_ACID_METABOLISM Genes involved in linoleic acid metabolism AKR1B10, ALOX15, ALOX5, CYP1A2, CYP2C18, CYP2C19, CYP2C8, CYP2C9, CYP2E1, CYP2J2, CYP3A4, CYP3A43, CYP3A5, CYP3A7, HSD3B7, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, RDH11, RDH12, RDH13, RDH14 31 ALOX5(4), CYP1A2(2), CYP2C19(4), CYP2C8(2), CYP2C9(4), CYP2E1(5), CYP2J2(3), CYP3A4(1), CYP3A5(3), CYP3A7(4), HSD3B7(2), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), RDH12(2), RDH13(1) 5589290 46 26 46 22 17 10 1 15 2 1 0.60 1.00 326 IL4PATHWAY IL-4 promotes Th2 cell differentiation via a heterodimeric receptor that activates Stat6/JAK and MAP kinase pathways. AKT1, GRB2, IL2RG, IL4, IL4R, IRS1, JAK1, JAK3, RPS6KB1, SHC1, STAT6 11 AKT1(2), GRB2(2), IL4(3), IL4R(1), IRS1(5), JAK1(3), JAK3(6), RPS6KB1(3), SHC1(3), STAT6(2) 3442589 30 21 28 10 10 7 2 6 5 0 0.60 1.00 327 HSA00363_BISPHENOL_A_DEGRADATION Genes involved in bisphenol A degradation AKR1B10, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, HSD3B7, PON1, PON2, PON3, RDH11, RDH12, RDH13, RDH14 13 DHRS1(1), DHRS2(2), DHRS3(2), HSD3B7(2), PON1(5), PON2(1), PON3(2), RDH12(2), RDH13(1) 1963562 18 14 18 7 7 3 1 3 4 0 0.60 1.00 328 SYNTHESIS_AND_DEGRADATION_OF_KETONE_BODIES ACAT1, ACAT2, BDH, HMGCL, OXCT1 4 ACAT1(1), ACAT2(2), OXCT1(3) 785385 6 6 6 2 1 1 0 4 0 0 0.60 1.00 329 TELPATHWAY Telomerase is a ribonucleotide protein that adds telomeric repeats to the 3' ends of chromosomes. AKT1, BCL2, EGFR, G22P1, HSPCA, IGF1R, KRAS2, MYC, POLR2A, PPP2CA, PRKCA, RB1, TEP1, TERF1, TERT, TNKS, TP53, XRCC5 14 AKT1(2), BCL2(1), EGFR(10), IGF1R(7), POLR2A(6), PPP2CA(1), PRKCA(2), RB1(4), TEP1(7), TERT(2), TNKS(4), XRCC5(4) 6400586 50 33 50 15 24 7 1 14 3 1 0.61 1.00 330 HSA05110_CHOLERA_INFECTION Genes involved in cholera - infection ACTG1, ACTG2, ADCY3, ADCY9, AK1, ARF1, ARF3, ARF4, ARF5, ARF6, ARL4D, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ERO1L, GNAS, PDIA4, PLCG1, PLCG2, PRKCA, SEC61A1, SEC61A2, SEC61B, SEC61G, TRIM23 41 ACTG2(3), ADCY3(1), ADCY9(4), ARF4(2), ARF6(1), ARL4D(1), ATP6V0A1(2), ATP6V0A2(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V0D2(6), ATP6V1A(2), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1E2(2), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), ERO1L(1), GNAS(6), PDIA4(4), PLCG1(4), PLCG2(9), PRKCA(2), SEC61A1(5), SEC61A2(1), SEC61B(1), TRIM23(5) 8616822 79 39 75 27 38 19 3 13 6 0 0.61 1.00 331 CASPASEPATHWAY Caspases are cysteine proteases active in apoptosis; caspase-8 and 9 cleave and activate other caspases, while 3, 6, and 7 cleave cellular targets. ADPRT, APAF1, ARHGDIB, BIRC2, BIRC3, BIRC4, CASP1, CASP10, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CYCS, DFFA, DFFB, GZMB, LMNA, LMNB1, LMNB2, PRF1 20 APAF1(7), ARHGDIB(3), BIRC2(2), BIRC3(2), CASP1(2), CASP10(2), CASP2(4), CASP3(1), CASP4(1), CASP6(1), CASP7(1), CASP9(2), DFFA(2), DFFB(2), GZMB(1), LMNB1(2), LMNB2(1) 4232493 36 24 36 12 8 8 1 16 3 0 0.61 1.00 332 GANGLIOSIDE_BIOSYNTHESIS B3GALT4, GALGT, SIAT4A, SIAT4B, SIAT7B, SIAT7D, SIAT9, ST3GAL1, ST3GAL2, ST3GAL4, ST3GAL5, ST6GALNAC2, ST6GALNAC4, ST8SIA1 8 B3GALT4(1), ST3GAL1(1), ST3GAL2(1), ST3GAL4(2), ST6GALNAC2(1), ST6GALNAC4(1), ST8SIA1(3) 1310750 10 9 10 2 2 2 1 3 2 0 0.62 1.00 333 PLCEPATHWAY Gs-coupled receptors activate adenylyl cyclase, which activates Epac1, leading to the stimulation of PLC and subsequent DAG and IP3 production. ADCY1, ADRB2, GNAS, PLCE1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTGER1, RAP2B 11 ADCY1(4), GNAS(6), PLCE1(7), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 3351631 24 20 24 9 10 4 2 5 3 0 0.62 1.00 334 ANDROGEN_AND_ESTROGEN_METABOLISM AKR1C4, AKR1D1, ARSB, ARSD, ARSE, CYP11B1, CYP11B2, HSD11B1, HSD11B2, HSD17B2, HSD17B3, HSD17B8, HSD3B1, HSD3B2, SRD5A1, SRD5A2, STS, SULT1E1, SULT2A1, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4 30 AKR1C4(2), ARSB(5), ARSD(3), ARSE(2), CYP11B1(5), CYP11B2(5), HSD11B1(1), HSD17B2(1), HSD17B3(1), HSD17B8(1), HSD3B1(2), SRD5A1(1), SRD5A2(1), STS(6), SULT1E1(1), SULT2A1(1), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2B15(2), UGT2B4(2) 6081638 57 29 57 8 29 10 1 10 7 0 0.62 1.00 335 SIG_PIP3_SIGNALING_IN_B_LYMPHOCYTES Genes related to PIP3 signaling in B lymphocytes AKT1, AKT2, AKT3, BCR, BTK, CD19, CDKN2A, DAPP1, FLOT1, FLOT2, FOXO3A, GAB1, ITPR1, ITPR2, ITPR3, LYN, NR0B2, P101-PI3K, PDK1, PHF11, PIK3CA, PITX2, PLCG2, PPP1R13B, PREX1, PSCD3, PTEN, PTPRC, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SAG, SYK, TEC, VAV1 31 AKT1(2), AKT2(5), BCR(6), BTK(6), CD19(3), CDKN2A(1), DAPP1(1), FLOT1(3), GAB1(6), ITPR1(11), ITPR2(12), ITPR3(11), LYN(4), PHF11(2), PITX2(2), PLCG2(9), PPP1R13B(5), PREX1(14), PTPRC(9), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KB1(3), SAG(1), TEC(1), VAV1(11) 12327039 140 48 138 45 56 33 4 32 15 0 0.63 1.00 336 BENZOATE_DEGRADATION_VIA_COA_LIGATION ACAT1, ACAT2, ACYP1, ACYP2, ECHS1, EHHADH, GCDH, HADHA, SDHB, SDS 10 ACAT1(1), ACAT2(2), ACYP1(1), ECHS1(2), EHHADH(2), GCDH(3), HADHA(2), SDHB(2), SDS(2) 1831399 17 11 17 1 5 3 0 5 4 0 0.63 1.00 337 METHIONINEPATHWAY Catabolic Pathways for Methionine, Isoleucine, Threonine and Valine BCKDHB, BCKDK, CBS, CTH, MUT 5 BCKDHB(1), BCKDK(2), CBS(2), CTH(1), MUT(3) 1136819 9 8 9 1 4 2 0 0 3 0 0.63 1.00 338 HSA00970_AMINOACYL_TRNA_BIOSYNTHESIS Genes involved in aminoacyl-tRNA biosynthesis AARS, AARS2, CARS, CARS2, DARS, DARS2, EARS2, EPRS, FARS2, FARSA, FARSB, GARS, HARS, HARS2, IARS, IARS2, KARS, LARS, LARS2, MARS, MARS2, MTFMT, NARS, NARS2, PARS2, QARS, RARS, RARS2, SARS, SARS2, TARS, TARS2, VARS, VARS2, WARS, WARS2, YARS, YARS2 38 AARS(4), AARS2(6), CARS(5), CARS2(1), DARS(3), DARS2(2), EPRS(10), FARS2(4), FARSA(1), FARSB(7), GARS(3), HARS(2), HARS2(2), IARS(5), IARS2(6), KARS(3), LARS(4), LARS2(2), MARS(3), MTFMT(1), NARS(2), NARS2(3), QARS(7), RARS(2), RARS2(3), SARS(1), SARS2(2), TARS(3), TARS2(4), VARS(1), VARS2(6), WARS(1), WARS2(2), YARS(2), YARS2(3) 12430833 116 44 116 19 45 23 2 30 16 0 0.63 1.00 339 IL2PATHWAY IL-2 promotes proliferation via JAK and MAP kinase and has surface receptors on activated B cells, LPS-treated monocytes, and many T cells. CSNK2A1, ELK1, FOS, GRB2, HRAS, IL2, IL2RA, IL2RB, IL2RG, JAK1, JAK3, JUN, LCK, MAP2K1, MAPK3, MAPK8, RAF1, SHC1, SOS1, STAT5A, STAT5B, SYK 22 CSNK2A1(4), GRB2(2), IL2(3), IL2RA(2), IL2RB(1), JAK1(3), JAK3(6), LCK(2), MAP2K1(3), MAPK3(2), MAPK8(2), RAF1(4), SHC1(3), SOS1(5), STAT5B(2) 5512650 44 26 41 16 14 11 4 12 3 0 0.63 1.00 340 NO1PATHWAY Shear stress in endothelial cells increases cytoplasmic calcium, which activates nitric oxide synthase III to release NO, which in turn regulates cardiac contractions. ACTA1, AKT1, BDK, BDKRB2, CALM1, CALM2, CALM3, CAV1, CHRM1, CHRNA1, FLT1, FLT4, HSPCA, KDR, NOS3, PDE2A, PDE3A, PDE3B, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKG1, PRKG2, RYR2, SLC7A1, SYT1, TNNI1, VEGF 28 ACTA1(3), AKT1(2), BDKRB2(2), CHRM1(3), CHRNA1(2), FLT1(9), FLT4(4), KDR(8), NOS3(2), PDE3A(5), PDE3B(2), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKG1(4), PRKG2(3), RYR2(48), SLC7A1(2), SYT1(1), TNNI1(2) 9560554 109 41 109 44 39 26 4 30 10 0 0.64 1.00 341 NFATPATHWAY Cardiac hypertrophy is induced by NF-ATc4 and GATA4, which are stimulated through calcineurin activated by CaMK. ACTA1, AGT, AKT1, CALM1, CALM2, CALM3, CALR, CAMK1, CAMK1G, CAMK4, CREBBP, CSNK1A1, CTF1, DTR, EDN1, ELSPBP1, F2, FGF2, FKBP1A, GATA4, GSK3B, HAND1, HAND2, HRAS, IGF1, LIF, MAP2K1, MAPK1, MAPK14, MAPK3, MAPK8, MEF2C, MYH2, NFATC1, NFATC2, NFATC3, NFATC4, NKX2-5, NPPA, PIK3CA, PIK3R1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RAF1, RPS6KB1, SYT1 50 ACTA1(3), AGT(4), AKT1(2), CAMK1(1), CAMK1G(3), CAMK4(2), CREBBP(21), CSNK1A1(2), EDN1(1), ELSPBP1(1), F2(2), GATA4(1), GSK3B(7), HAND1(1), HAND2(1), IGF1(2), MAP2K1(3), MAPK1(2), MAPK14(3), MAPK3(2), MAPK8(2), MEF2C(7), MYH2(9), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NKX2-5(1), NPPA(1), PIK3R1(5), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), RAF1(4), RPS6KB1(3), SYT1(1) 11197322 124 44 123 32 43 34 4 24 19 0 0.64 1.00 342 STREPTOMYCIN_BIOSYNTHESIS GCK, HK1, HK2, HK3, IMPA1, PGM1, PGM3, TGDS 8 GCK(1), HK1(6), HK2(3), HK3(4), IMPA1(2), PGM1(2), PGM3(4) 2372138 22 16 22 11 6 6 0 10 0 0 0.64 1.00 343 HIFPATHWAY Under normal conditions, hypoxia inducible factor HIF-1 is degraded; under hypoxic conditions, it activates transcription of genes controlled by hpoxic response elements (HREs). ARNT, ASPH, COPS5, CREB1, EDN1, EP300, EPO, HIF1A, HSPCA, JUN, LDHA, NOS3, P4HB, VEGF, VHL 13 ARNT(4), ASPH(2), CREB1(1), EDN1(1), EP300(13), HIF1A(1), LDHA(1), NOS3(2), P4HB(2) 3890309 27 21 27 10 8 11 0 6 2 0 0.64 1.00 344 GLYCOSAMINOGLYCAN_DEGRADATION ARSB, GALNS, GLB1, GNS, GUSB, HEXA, HEXB, IDS, IDUA, LCT, NAGLU 11 ARSB(5), GALNS(4), GLB1(3), GNS(1), GUSB(2), HEXB(1), IDS(2), IDUA(1), LCT(15), NAGLU(3) 3395950 37 22 37 10 16 6 2 9 4 0 0.64 1.00 345 UCALPAINPATHWAY Calpains promote formation of integrin adhesion clusters which recruit Rac to enable the formation of mature focal adhesions that do not contain calpain. ACTA1, ACTN1, ACTN2, ACTN3, ARHA, CAPN1, CAPNS1, CAPNS2, ITGA1, ITGB1, ITGB3, PTK2, PXN, RAC1, SPTAN1, SRC, TLN1, VIL2 16 ACTA1(3), ACTN1(3), ACTN2(7), ACTN3(2), CAPN1(2), CAPNS1(1), CAPNS2(1), ITGA1(3), ITGB1(6), ITGB3(7), PTK2(5), SPTAN1(9), SRC(3), TLN1(5) 6771248 57 33 57 25 28 11 0 15 2 1 0.64 1.00 346 HSA00350_TYROSINE_METABOLISM Genes involved in tyrosine metabolism ABP1, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, AOX1, ARD1A, CARM1, COMT, DBH, DCT, DDC, ECH1, ESCO1, ESCO2, FAH, GOT1, GOT2, GSTZ1, HEMK1, HGD, HPD, LCMT1, LCMT2, LYCAT, MAOA, MAOB, METTL2B, METTL6, MIF, MYST3, MYST4, NAT5, NAT6, PNMT, PNPLA3, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SH3GLB1, TAT, TH, TPO, TYR, TYRP1, WBSCR22 56 ABP1(1), ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A3(4), ALDH3A1(2), ALDH3B1(2), ALDH3B2(1), AOC2(4), AOC3(4), AOX1(5), CARM1(2), DBH(4), DCT(9), DDC(1), ECH1(1), ESCO1(7), ESCO2(3), FAH(1), GOT1(5), GOT2(1), GSTZ1(2), HGD(1), HPD(3), LCMT1(1), LCMT2(2), MAOA(2), METTL2B(1), METTL6(5), MYST3(13), MYST4(5), PNPLA3(4), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), SH3GLB1(3), TAT(3), TPO(8), TYR(2), TYRP1(2), WBSCR22(1) 13717989 145 49 144 56 58 37 3 40 7 0 0.64 1.00 347 HSA01040_POLYUNSATURATED_FATTY_ACID_BIOSYNTHESIS Genes involved in polyunsaturated fatty acid biosynthesis ACAA1, ACOX1, ACOX3, ELOVL2, ELOVL5, ELOVL6, FADS1, FADS2, FASN, GPSN2, HADHA, HSD17B12, PECR, SCD 13 ACAA1(2), ACOX1(3), ACOX3(5), ELOVL2(3), ELOVL5(1), ELOVL6(1), FADS2(3), FASN(1), HADHA(2), HSD17B12(2), SCD(2) 3222844 25 19 25 4 11 6 1 4 3 0 0.64 1.00 348 AHSPPATHWAY Alpha-hemoglobin stabilizing protein (AHSP) prevents precitipation of hemoglobin alpha-subunits. ALAD, ALAS1, ALAS2, CPO, ERAF, FECH, GATA1, HBA1, HBA2, HBB, HMBS, UROD, UROS 12 ALAS1(5), ALAS2(5), CPO(3), FECH(2), GATA1(4), HBB(2), HMBS(2), UROS(1) 1917806 24 14 24 5 13 5 0 5 1 0 0.64 1.00 349 VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION ACAA1, ACAA2, ACADL, ACADM, ACADS, ACADSB, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH9A1, AOX1, BCAT1, BCKDHA, BCKDHB, ECHS1, EHHADH, HADHA, HADHB, HIBADH, HMGCL, IVD, MCCC1, MCCC2, MCEE, MUT, OXCT1, PCCA, PCCB, SDS 36 ACAA1(2), ACADM(3), ACADSB(5), ACAT1(1), ACAT2(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH6A1(3), ALDH9A1(1), AOX1(5), BCAT1(1), BCKDHA(3), BCKDHB(1), ECHS1(2), EHHADH(2), HADHA(2), HADHB(1), MCCC1(7), MCCC2(2), MCEE(1), MUT(3), OXCT1(3), PCCA(3), PCCB(3), SDS(2) 8419881 85 37 85 18 33 19 0 24 9 0 0.64 1.00 350 HSA00360_PHENYLALANINE_METABOLISM Genes involved in phenylalanine metabolism ABP1, ALDH1A3, ALDH3A1, ALDH3B1, ALDH3B2, AOC2, AOC3, ARD1A, DDC, EPX, ESCO1, ESCO2, GOT1, GOT2, HPD, LPO, LYCAT, MAOA, MAOB, MIF, MPO, MYST3, MYST4, NAT5, NAT6, PNPLA3, PRDX6, SH3GLB1, TAT, TPO 27 ABP1(1), ALDH1A3(4), ALDH3A1(2), ALDH3B1(2), ALDH3B2(1), AOC2(4), AOC3(4), DDC(1), EPX(6), ESCO1(7), ESCO2(3), GOT1(5), GOT2(1), HPD(3), LPO(2), MAOA(2), MPO(3), MYST3(13), MYST4(5), PNPLA3(4), PRDX6(2), SH3GLB1(3), TAT(3), TPO(8) 7975789 89 39 88 26 45 22 1 16 5 0 0.64 1.00 351 GLYCEROLIPID_METABOLISM ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AKR1A1, AKR1B1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, CEL, DGAT1, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, GK, GLA, GLB1, LCT, LIPC, LIPF, LIPG, LPL, PNLIP, PNLIPRP1, PNLIPRP2, PPAP2A, PPAP2B, PPAP2C 44 ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6), AGPAT1(1), AGPAT3(3), AGPAT4(6), AKR1B1(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), CEL(1), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKZ(2), GK(3), GLA(4), GLB1(3), LCT(15), LIPC(3), LIPF(1), LIPG(2), LPL(6), PNLIP(5), PNLIPRP1(4), PNLIPRP2(1), PPAP2B(1) 11147525 136 43 135 36 43 31 2 49 11 0 0.64 1.00 352 SA_PTEN_PATHWAY PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. AKT1, AKT2, AKT3, BPNT1, GRB2, ILK, MAPK1, MAPK3, PDK1, PIK3CA, PIK3CD, PIP3-E, PTEN, PTK2B, RBL2, SHC1, SOS1 14 AKT1(2), AKT2(5), BPNT1(1), GRB2(2), MAPK1(2), MAPK3(2), PIK3CD(2), PTK2B(1), RBL2(8), SHC1(3), SOS1(5) 4048623 33 21 32 10 9 7 3 8 6 0 0.65 1.00 353 SA_G2_AND_M_PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. CDC2, CDC25A, CDC25B, CDK7, CDKN1A, CHEK1, NEK1, WEE1 7 CDC25A(2), CDC25B(5), CDK7(1), CDKN1A(1), CHEK1(1), NEK1(7), WEE1(3) 1746541 20 12 19 7 7 4 0 8 1 0 0.65 1.00 354 HSA00230_PURINE_METABOLISM Genes involved in purine metabolism ADA, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADCY9, ADK, ADSL, ADSS, ADSSL1, AK1, AK2, AK3L1, AK5, AK7, ALLC, AMPD1, AMPD2, AMPD3, APRT, ATIC, CANT1, DCK, DGUOK, ECGF1, ENPP1, ENPP3, ENTPD1, ENTPD2, ENTPD3, ENTPD4, ENTPD5, ENTPD6, ENTPD8, FHIT, GART, GDA, GMPR, GMPR2, GMPS, GUCY1A2, GUCY1A3, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, GUK1, HPRT1, IMPDH1, IMPDH2, ITPA, NME1, NME2, NME4, NME6, NME7, NP, NPR1, NPR2, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT2, NUDT5, NUDT9, PAICS, PAPSS1, PAPSS2, PDE10A, PDE11A, PDE1A, PDE1C, PDE2A, PDE3B, PDE4A, PDE4B, PDE4C, PDE4D, PDE5A, PDE6D, PDE6G, PDE6H, PDE7A, PDE7B, PDE8A, PDE8B, PDE9A, PFAS, PKLR, PKM2, PNPT1, POLA1, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, PPAT, PRIM1, PRIM2, PRPS1, PRPS1L1, PRPS2, PRUNE, RFC5, RRM1, RRM2, RRM2B, SAC, XDH, ZNRD1 141 ADA(2), ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADCY9(4), ADK(1), ADSL(7), ADSS(1), AK5(4), AK7(5), ALLC(3), AMPD1(7), AMPD2(4), AMPD3(2), ATIC(4), DCK(1), ENPP1(4), ENPP3(3), ENTPD1(2), ENTPD3(5), ENTPD4(5), ENTPD5(1), ENTPD6(1), FHIT(1), GART(3), GMPR(1), GMPR2(2), GMPS(5), GUCY1A2(8), GUCY1B3(7), GUCY2C(7), GUCY2D(4), GUCY2F(7), HPRT1(2), IMPDH1(1), IMPDH2(1), ITPA(2), NME6(3), NME7(3), NPR1(6), NPR2(9), NT5C1A(1), NT5C1B(9), NT5C2(3), NT5C3(2), NT5E(2), NT5M(1), NUDT9(2), PAPSS1(1), PAPSS2(2), PDE10A(6), PDE11A(7), PDE1A(3), PDE1C(7), PDE3B(2), PDE4A(4), PDE4B(2), PDE4C(2), PDE4D(3), PDE5A(3), PDE6D(1), PDE7A(3), PDE7B(3), PDE8A(1), PDE8B(6), PDE9A(5), PFAS(1), PKM2(2), PNPT1(5), POLA1(5), POLA2(2), POLD1(5), POLD2(1), POLD3(2), POLE(17), POLE3(1), POLR1A(7), POLR1B(6), POLR1C(2), POLR1D(2), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLR3A(7), POLR3B(6), POLR3GL(1), POLR3H(1), PPAT(3), PRIM2(6), PRPS1L1(1), PRPS2(2), RFC5(2), RRM1(1), RRM2(2), XDH(7) 38312174 380 81 377 122 124 103 11 91 51 0 0.65 1.00 355 HSA00521_STREPTOMYCIN_BIOSYNTHESIS Genes involved in streptomycin biosynthesis GCK, HK1, HK2, HK3, IMPA1, IMPA2, ISYNA1, PGM1, PGM3, TGDS 10 GCK(1), HK1(6), HK2(3), HK3(4), IMPA1(2), IMPA2(2), PGM1(2), PGM3(4) 2698897 24 18 24 11 7 6 0 10 1 0 0.65 1.00 356 NEUROTRANSMITTERSPATHWAY Biosynthesis of neurotransmitters DBH, GAD1, HDC, PNMT, TH, TPH1 6 DBH(4), GAD1(7), HDC(3), TPH1(1) 1385137 15 12 15 6 6 2 1 6 0 0 0.65 1.00 357 DREAMPATHWAY The transcription factor DREAM blocks expression of the prodynorphin gene, which encodes the ligand of an opioid receptor that blocks pain signaling. CREB1, CREM, CSEN, FOS, JUN, MAPK3, OPRK1, POLR2A, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 13 CREB1(1), CREM(4), MAPK3(2), OPRK1(5), POLR2A(6), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 2950350 25 18 25 5 12 6 1 5 1 0 0.65 1.00 358 CYANOAMINO_ACID_METABOLISM ATP6V0C, SHMT1, GBA3, GGT1, SHMT1, SHMT2 4 GBA3(3), SHMT1(1), SHMT2(2) 759496 6 6 6 3 2 1 0 0 3 0 0.65 1.00 359 HSA00930_CAPROLACTAM_DEGRADATION Genes involved in caprolactam degradation AKR1A1, ASAHL, ECHS1, EHHADH, HADH, HADHA, HSD17B10, HSD17B4, NTAN1, SIRT1, SIRT2, SIRT5, SIRT7, VNN2, VNN3 13 ECHS1(2), EHHADH(2), HADH(1), HADHA(2), HSD17B10(1), HSD17B4(3), NTAN1(3), SIRT1(4), SIRT2(1), SIRT5(1), SIRT7(1), VNN2(1) 2736367 22 17 22 8 8 7 0 2 5 0 0.65 1.00 360 MRPPATHWAY Cancer cells resistant to numerous drugs are called multidrug-resistant (MDR) and express ATP-binding cassette transporter proteins that pump the drugs out of cells. ABCB1, ABCB11, ABCB4, ABCC1, ABCC3, GSTP1 6 ABCB1(6), ABCB11(8), ABCB4(8), ABCC1(8), ABCC3(5) 3388585 35 21 35 10 5 14 0 10 6 0 0.65 1.00 361 HSA00642_ETHYLBENZENE_DEGRADATION Genes involved in ethylbenzene degradation ARD1A, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ESCO1, ESCO2, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1 11 DHRS1(1), DHRS2(2), DHRS3(2), ESCO1(7), ESCO2(3), MYST3(13), MYST4(5), PNPLA3(4), SH3GLB1(3) 3712885 40 21 40 13 19 10 1 6 4 0 0.66 1.00 362 C21_STEROID_HORMONE_METABOLISM AKR1C4, AKR1D1, CYP11A1, CYP11B1, CYP11B2, CYP17A1, CYP21A2, HSD11B1, HSD11B2, HSD3B1, HSD3B2 11 AKR1C4(2), CYP11A1(2), CYP11B1(5), CYP11B2(5), CYP17A1(2), HSD11B1(1), HSD3B1(2) 2080740 19 14 19 6 11 4 0 4 0 0 0.66 1.00 363 HSA00140_C21_STEROID_HORMONE_METABOLISM Genes involved in C21-steroid hormone metabolism AKR1C4, AKR1D1, CYP11A1, CYP11B1, CYP11B2, CYP17A1, CYP21A2, HSD11B1, HSD11B2, HSD3B1, HSD3B2 11 AKR1C4(2), CYP11A1(2), CYP11B1(5), CYP11B2(5), CYP17A1(2), HSD11B1(1), HSD3B1(2) 2080740 19 14 19 6 11 4 0 4 0 0 0.66 1.00 364 HSA00670_ONE_CARBON_POOL_BY_FOLATE Genes involved in one carbon pool by folate ALDH1L1, AMT, ATIC, DHFR, FTCD, GART, MTFMT, MTHFD1, MTHFD1L, MTHFD2, MTHFR, MTHFS, MTR, SHMT1, SHMT2, TYMS 16 ALDH1L1(3), ATIC(4), FTCD(2), GART(3), MTFMT(1), MTHFD1(6), MTHFD1L(6), MTHFR(6), MTHFS(1), MTR(6), SHMT1(1), SHMT2(2), TYMS(2) 4423142 43 25 43 11 18 9 0 11 5 0 0.66 1.00 365 IL17PATHWAY Activated T cells secrete IL-17, which stimulates fibroblasts and other cells to secrete inflammatory and hematopoietic cytokines. CD2, CD34, CD3D, CD3E, CD3G, CD3Z, CD4, CD58, CD8A, CSF3, IL17, IL3, IL6, IL8, KITLG, TRA@, TRB@ 13 CD2(3), CD34(1), CD3D(1), CD3G(2), CD4(2), CD58(1), IL3(3), IL6(1), KITLG(2) 1478632 16 10 15 6 5 6 0 4 1 0 0.66 1.00 366 IFNAPATHWAY Interferon alpha, active in the immune response, binds to the IFN receptor and activates Jak1 and Tyk2, which phosphorylate Stat1 and Stat2. IFNA1, IFNAR1, IFNAR2, IFNB1, ISGF3G, JAK1, STAT1, STAT2, TYK2 8 IFNA1(1), IFNAR1(3), IFNAR2(1), IFNB1(1), JAK1(3), STAT1(6), STAT2(5), TYK2(1) 2512999 21 16 20 4 10 3 1 5 2 0 0.66 1.00 367 HSA04340_HEDGEHOG_SIGNALING_PATHWAY Genes involved in Hedgehog signaling pathway BMP2, BMP4, BMP5, BMP6, BMP7, BMP8A, BMP8B, BTRC, CSNK1A1, CSNK1A1L, CSNK1D, CSNK1E, CSNK1G1, CSNK1G2, CSNK1G3, DHH, FBXW11, GAS1, GLI1, GLI2, GLI3, GSK3B, HHIP, IHH, LRP2, PRKACA, PRKACB, PRKACG, PRKX, PRKY, PTCH1, PTCH2, RAB23, SHH, SMO, STK36, SUFU, WNT1, WNT10A, WNT10B, WNT11, WNT16, WNT2, WNT2B, WNT3, WNT3A, WNT4, WNT5A, WNT5B, WNT6, WNT7A, WNT7B, WNT8A, WNT8B, WNT9A, WNT9B, ZIC2 55 BMP4(1), BMP5(4), BMP6(3), BMP7(5), BMP8A(1), BTRC(2), CSNK1A1(2), CSNK1A1L(5), CSNK1D(3), CSNK1G1(1), CSNK1G3(2), DHH(1), FBXW11(7), GLI1(3), GLI2(2), GLI3(9), GSK3B(7), HHIP(4), IHH(1), LRP2(39), PRKACB(1), PRKACG(2), PRKX(2), PTCH1(8), PTCH2(4), RAB23(1), STK36(4), SUFU(4), WNT1(1), WNT10B(3), WNT11(3), WNT16(2), WNT2B(1), WNT3(4), WNT3A(1), WNT4(1), WNT5A(3), WNT7A(2), WNT7B(2), WNT8A(1), WNT9A(2), WNT9B(1), ZIC2(1) 14040291 156 56 155 70 71 33 2 32 18 0 0.67 1.00 368 UBIQUITIN_MEDIATED_PROTEOLYSIS CDC34, HIP2, NRF1, UBE1, UBE2A, UBE2B, UBE2C, UBE2D1, UBE2D2, UBE2D3, UBE2E1, UBE2E3, UBE2G1, UBE2G2, UBE2G2, TAX1BP3, UBE2H, UBE2I, UBE2J1, UBE2J2, UBE2L3, UBE2L6, UBE2M, UBE2N, UBE2S, UBE3A 23 NRF1(3), UBE2A(2), UBE2B(2), UBE2C(2), UBE2D1(1), UBE2E1(3), UBE2G1(2), UBE2I(1), UBE2J2(1), UBE2L3(2), UBE3A(6) 2443014 25 14 25 10 7 2 2 9 5 0 0.67 1.00 369 HSA00530_AMINOSUGARS_METABOLISM Genes involved in aminosugars metabolism AMDHD2, CHIA, CHIT1, CMAS, CTBS, CYB5R1, CYB5R3, GFPT1, GFPT2, GNE, GNPDA1, GNPDA2, GNPNAT1, HEXA, HEXB, HK1, HK2, HK3, LHPP, MTMR1, MTMR2, MTMR6, NAGK, NANS, NPL, PGM3, PHPT1, RENBP, UAP1 29 CHIA(5), CHIT1(4), CMAS(5), CTBS(4), CYB5R1(1), CYB5R3(1), GFPT1(3), GFPT2(3), GNE(2), GNPDA2(1), HEXB(1), HK1(6), HK2(3), HK3(4), LHPP(1), MTMR1(4), MTMR2(1), MTMR6(4), NAGK(2), NPL(2), PGM3(4), PHPT1(1), RENBP(1) 6700701 63 33 63 17 25 17 0 16 5 0 0.67 1.00 370 HEME_BIOSYNTHESIS ALAD, ALAS1, ALAS2, CPOX, FECH, HMBS, PPOX, UROD, UROS 9 ALAS1(5), ALAS2(5), FECH(2), HMBS(2), PPOX(3), UROS(1) 1799052 18 12 18 3 10 3 0 4 1 0 0.68 1.00 371 PTDINSPATHWAY Phosphoinositide 3 kinase (PI3K) phosphorylate inositol rings of phosphoinositide lipids, influencing vesicle trafficking, cell proliferation, and migration. AKT1, AP2A1, AP2M1, ARF1, BAD, BTK, EEA1, GRASP, GSK3A, GSK3B, LYN, PDPK1, PFKL, PFKM, PFKP, PFKX, PLCG1, PRKCE, PRKCZ, RAB5A, RAC1, RPS6KB1, VAV2 22 AKT1(2), AP2A1(2), AP2M1(4), BAD(1), BTK(6), EEA1(5), GRASP(1), GSK3A(2), GSK3B(7), LYN(4), PDPK1(1), PFKL(1), PFKM(1), PFKP(2), PLCG1(4), PRKCE(4), RPS6KB1(3), VAV2(2) 5960327 52 29 52 12 21 14 1 7 8 1 0.68 1.00 372 HSA05120_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION Genes involved in epithelial cell signaling in Helicobacter pylori infection ADAM10, ADAM17, ATP6AP1, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, CASP3, CCL5, CDC42, CHUK, CSK, CXCL1, EGFR, F11R, GIT1, HBEGF, IGSF5, IKBKB, IKBKG, IL8, IL8RA, IL8RB, JAM2, JAM3, JUN, LYN, MAP2K4, MAP3K14, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK8, MAPK9, MET, NFKB1, NFKB2, NFKBIA, NOD1, PAK1, PLCG1, PLCG2, PTPN11, PTPRZ1, RAC1, RELA, SRC, TCIRG1, TJP1 64 ADAM10(1), ADAM17(6), ATP6AP1(2), ATP6V0A1(2), ATP6V0A2(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V0D2(6), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1E2(2), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), CASP3(1), CHUK(4), CSK(1), EGFR(10), F11R(1), GIT1(2), HBEGF(1), IGSF5(6), IKBKB(2), JAM3(3), LYN(4), MAP3K14(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK8(2), MAPK9(3), MET(4), NFKB1(3), NFKB2(2), NOD1(3), PAK1(4), PLCG1(4), PLCG2(9), PTPN11(2), PTPRZ1(12), RELA(2), SRC(3), TCIRG1(2), TJP1(5) 16321743 149 51 147 41 56 37 3 38 15 0 0.68 1.00 373 ST_P38_MAPK_PATHWAY p38 is a MAP kinase regulated by cytokines and cellular stress. AKT1, ATF1, CDC42, CREB1, CREB3, CREB5, DUSP1, DUSP10, EEF2K, EIF4E, ELK1, GADD45A, HSPB1, IL1R1, MAP2K3, MAP2K4, MAP2K6, MAP3K10, MAP3K4, MAP3K5, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAPK1, MAPK11, MAPK12, MAPK13, MAPK14, MAPKAPK2, MAPKAPK5, MKNK1, MKNK2, MYEF2, NFKB1, NR2C2, SRF, TRAF6 34 AKT1(2), ATF1(1), CREB1(1), CREB3(2), CREB5(2), DUSP1(2), DUSP10(4), IL1R1(3), MAP2K3(2), MAP2K6(2), MAP3K10(2), MAP3K4(15), MAP3K5(5), MAP3K7(2), MAPK1(2), MAPK12(2), MAPK14(3), MAPKAPK2(3), MAPKAPK5(1), MKNK1(1), MKNK2(2), MYEF2(7), NFKB1(3), NR2C2(4), SRF(3), TRAF6(4) 7678070 80 36 79 22 25 19 2 22 12 0 0.68 1.00 374 LYMPHOCYTEPATHWAY B and T cell lymphocytes interact with other cells via transmembrane adhesion proteins such as CD44, which interacts with endothelial cells. CD44, ICAM1, ITGA4, ITGAL, ITGB1, ITGB2, PECAM1, SELE, SELL 9 CD44(3), ICAM1(2), ITGA4(3), ITGAL(5), ITGB1(6), ITGB2(4), PECAM1(1), SELE(2) 3067797 26 18 25 8 8 9 0 7 2 0 0.68 1.00 375 HISTIDINE_METABOLISM ABP1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, AOC2, AOC3, ASPA, CNDP1, DDC, HAL, HARS, HARSL, HDC, HNMT, MAOA, MAOB, PRPS1, PRPS2 24 ABP1(1), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH3B1(2), ALDH3B2(1), ALDH9A1(1), AOC2(4), AOC3(4), ASPA(3), CNDP1(3), DDC(1), HAL(3), HARS(2), HDC(3), HNMT(4), MAOA(2), PRPS2(2) 5707199 63 31 63 15 26 19 0 17 1 0 0.68 1.00 376 ARFPATHWAY Cyclin-dependent kinase inhibitor 2A is a tumor suppressor that induces G1 arrest and can activate the p53 pathway, leading to G2/M arrest. ABL1, CDKN2A, E2F1, MDM2, MYC, PIK3CA, PIK3R1, POLR1A, POLR1B, POLR1C, POLR1D, RAC1, RB1, TBX2, TP53, TWIST1 14 ABL1(4), CDKN2A(1), MDM2(4), PIK3R1(5), POLR1A(7), POLR1B(6), POLR1C(2), POLR1D(2), RB1(4) 3950372 35 21 35 6 7 15 0 8 4 1 0.68 1.00 377 HSA04662_B_CELL_RECEPTOR_SIGNALING_PATHWAY Genes involved in B cell receptor signaling pathway AKT1, AKT2, AKT3, BCL10, BLNK, BTK, CARD11, CD19, CD22, CD72, CD79A, CD79B, CD81, CHP, CHUK, CR2, FCGR2B, FOS, GSK3B, HRAS, IFITM1, IKBKB, IKBKG, INPP5D, JUN, KRAS, LILRB3, LYN, MALT1, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NRAS, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCB1, PTPN6, RAC1, RAC2, RAC3, RASGRP3, SYK, VAV1, VAV2, VAV3 59 AKT1(2), AKT2(5), BCL10(3), BTK(6), CARD11(6), CD19(3), CD22(8), CD72(3), CD79A(3), CHUK(4), CR2(9), GSK3B(7), IFITM1(1), IKBKB(2), INPP5D(2), LILRB3(1), LYN(4), MALT1(6), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLCG2(9), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PTPN6(4), RASGRP3(4), VAV1(11), VAV2(2), VAV3(10) 16669322 173 55 171 46 74 31 4 44 20 0 0.68 1.00 378 ST_INTEGRIN_SIGNALING_PATHWAY Integrins are transmembrane receptors that mediate cell growth, survival, and migration by binding to ligands in the extracellular matrix. ABL1, ACK1, ACTN1, ACTR2, ACTR3, AKT1, AKT2, AKT3, ANGPTL2, ARHGEF6, ARHGEF7, BCAR1, BRAF, CAV1, CDC42, CDKN2A, CRK, CSE1L, DDEF1, DOCK1, EPHB2, FYN, GRAF, GRB2, GRB7, GRF2, GRLF1, ILK, ITGA1, ITGA10, ITGA11, ITGA2, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGB3BP, MAP2K4, MAP2K7, MAP3K11, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MRAS, MYLK, MYLK2, P4HB, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PIK3CA, PIK3CB, PKLR, PLCG1, PLCG2, PTEN, PTK2, RAF1, RALA, RHO, ROCK1, ROCK2, SHC1, SOS1, SOS2, SRC, TERF2IP, TLN1, TLN2, VASP, WAS, ZYX 74 ABL1(4), ACTN1(3), ACTR2(1), ACTR3(2), AKT1(2), AKT2(5), ANGPTL2(8), ARHGEF6(7), ARHGEF7(8), CDKN2A(1), CSE1L(4), DOCK1(5), EPHB2(7), FYN(4), GRB2(2), GRB7(1), GRLF1(7), ITGA1(3), ITGA10(3), ITGA11(2), ITGA2(5), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGA7(6), ITGA8(5), ITGA9(4), ITGB3BP(1), MAP3K11(4), MAPK1(2), MAPK10(4), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3), MRAS(1), MYLK(11), MYLK2(2), P4HB(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PIK3CB(2), PLCG1(4), PLCG2(9), PTK2(5), RAF1(4), RHO(2), ROCK1(8), ROCK2(2), SHC1(3), SOS1(5), SOS2(9), SRC(3), TERF2IP(1), TLN1(5), TLN2(5), VASP(3), WAS(1) 27483894 236 71 231 91 85 56 6 58 31 0 0.69 1.00 379 METPATHWAY The hepatocyte growth factor receptor c-Met stimulates proliferation and alters cell motility and adhesion on binding the ligand HGF. ACTA1, CRK, CRKL, DOCK1, ELK1, FOS, GAB1, GRB2, GRF2, HGF, HRAS, ITGA1, ITGB1, JUN, MAP2K1, MAP2K2, MAP4K1, MAPK1, MAPK3, MAPK8, MET, PAK1, PIK3CA, PIK3R1, PTEN, PTK2, PTK2B, PTPN11, PXN, RAF1, RAP1A, RAP1B, RASA1, SOS1, SRC, STAT3 33 ACTA1(3), CRKL(2), DOCK1(5), GAB1(6), GRB2(2), HGF(5), ITGA1(3), ITGB1(6), MAP2K1(3), MAP4K1(2), MAPK1(2), MAPK3(2), MAPK8(2), MET(4), PAK1(4), PIK3R1(5), PTK2(5), PTK2B(1), PTPN11(2), RAF1(4), RAP1A(1), RAP1B(2), RASA1(5), SOS1(5), SRC(3), STAT3(2) 9842964 86 37 85 23 20 29 3 24 10 0 0.70 1.00 380 ST_JNK_MAPK_PATHWAY JNKs are MAP kinases regulated by several levels of kinases (MAPKK, MAPKKK) and phosphorylate transcription factors and regulatory proteins. AKT1, ATF2, CDC42, DLD, DUSP10, DUSP4, DUSP8, GAB1, GADD45A, GCK, IL1R1, JUN, MAP2K4, MAP2K5, MAP2K7, MAP3K1, MAP3K10, MAP3K11, MAP3K12, MAP3K13, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K9, MAPK10, MAPK7, MAPK8, MAPK9, MYEF2, NFATC3, NR2C2, PAPPA, SHC1, TP53, TRAF6, ZAK 36 AKT1(2), DUSP10(4), DUSP4(1), GAB1(6), GCK(1), IL1R1(3), MAP2K5(2), MAP3K1(6), MAP3K10(2), MAP3K11(4), MAP3K12(4), MAP3K13(8), MAP3K2(2), MAP3K3(2), MAP3K4(15), MAP3K5(5), MAP3K7(2), MAP3K9(2), MAPK10(4), MAPK7(3), MAPK8(2), MAPK9(3), MYEF2(7), NFATC3(4), NR2C2(4), PAPPA(13), SHC1(3), TRAF6(4), ZAK(4) 11386168 122 44 120 31 44 25 2 33 18 0 0.70 1.00 381 HSA04360_AXON_GUIDANCE Genes involved in axon guidance ABL1, ABLIM1, ABLIM2, ABLIM3, ARHGEF12, CDC42, CDK5, CFL1, CFL2, CHP, CXCL12, CXCR4, DCC, DPYSL2, DPYSL5, EFNA1, EFNA2, EFNA3, EFNA4, EFNA5, EFNB1, EFNB2, EFNB3, EPHA1, EPHA2, EPHA3, EPHA4, EPHA5, EPHA6, EPHA7, EPHA8, EPHB1, EPHB2, EPHB3, EPHB4, EPHB6, FES, FYN, GNAI1, GNAI2, GNAI3, GSK3B, HRAS, ITGB1, KRAS, L1CAM, LIMK1, LIMK2, LRRC4C, MAPK1, MAPK3, MET, NCK1, NCK2, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NGEF, NRAS, NRP1, NTN1, NTN2L, NTN4, NTNG1, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PLXNA1, PLXNA2, PLXNA3, PLXNB1, PLXNB2, PLXNB3, PLXNC1, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PTK2, RAC1, RAC2, RAC3, RASA1, RGS3, RHOA, RHOD, RND1, ROBO1, ROBO2, ROBO3, ROCK1, ROCK2, SEMA3A, SEMA3B, SEMA3C, SEMA3D, SEMA3E, SEMA3F, SEMA3G, SEMA4A, SEMA4B, SEMA4C, SEMA4D, SEMA4F, SEMA4G, SEMA5A, SEMA5B, SEMA6A, SEMA6B, SEMA6C, SEMA6D, SEMA7A, SLIT1, SLIT2, SLIT3, SRGAP1, SRGAP2, SRGAP3, UNC5A, UNC5B, UNC5C, UNC5D 123 ABL1(4), ABLIM1(5), ABLIM2(4), ABLIM3(5), ARHGEF12(7), CFL1(1), CXCL12(1), CXCR4(3), DCC(14), DPYSL2(3), DPYSL5(1), EFNA3(1), EFNA4(1), EFNA5(2), EFNB1(3), EFNB3(2), EPHA1(3), EPHA2(5), EPHA4(4), EPHA5(11), EPHA6(5), EPHA7(7), EPHA8(5), EPHB1(6), EPHB2(7), EPHB3(2), EPHB4(2), EPHB6(4), FYN(4), GNAI1(3), GSK3B(7), ITGB1(6), L1CAM(2), LIMK1(4), LIMK2(4), LRRC4C(6), MAPK1(2), MAPK3(2), MET(4), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NGEF(1), NRP1(1), NTN1(4), NTN4(4), NTNG1(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PLXNA1(2), PLXNA2(5), PLXNA3(1), PLXNB1(3), PLXNB2(2), PLXNB3(2), PLXNC1(7), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PTK2(5), RASA1(5), RGS3(8), RND1(1), ROBO1(15), ROBO2(15), ROBO3(2), ROCK1(8), ROCK2(2), SEMA3A(6), SEMA3B(1), SEMA3C(2), SEMA3D(9), SEMA3E(5), SEMA3F(1), SEMA3G(3), SEMA4A(2), SEMA4B(1), SEMA4D(12), SEMA4F(5), SEMA4G(5), SEMA5A(7), SEMA5B(7), SEMA6A(2), SEMA6C(2), SEMA6D(5), SEMA7A(2), SLIT1(9), SLIT2(12), SLIT3(7), SRGAP1(7), SRGAP2(3), SRGAP3(3), UNC5A(1), UNC5B(5), UNC5C(9), UNC5D(9) 45257772 440 94 435 155 174 91 3 117 55 0 0.71 1.00 382 SHHPATHWAY Sonic hedgehog (Shh) signaling in the developing CNS induces neuronal proliferation via interaction with the patched (Ptc-1) and smoothened receptors. DYRK1A, DYRK1B, GLI, GLI2, GLI3, GSK3B, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTCH, SHH, SMO, SUFU 14 DYRK1A(4), DYRK1B(4), GLI2(2), GLI3(9), GSK3B(7), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), SUFU(4) 3763458 37 23 37 21 18 9 2 3 5 0 0.71 1.00 383 SA_G1_AND_S_PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. ARF1, ARF3, CCND1, CDK2, CDK4, CDKN1A, CDKN1B, CDKN2A, CFL1, E2F1, E2F2, MDM2, NXT1, PRB1, TP53 14 CDK2(2), CDK4(2), CDKN1A(1), CDKN1B(1), CDKN2A(1), CFL1(1), E2F2(1), MDM2(4), NXT1(1) 1674613 14 10 14 4 2 4 0 7 1 0 0.71 1.00 384 RABPATHWAY Rab family GTPases regulate vesicle transport, endocytosis and exocytosis, and vesicle docking via interactions with the rabphilins. ACTA1, MEL, RAB11A, RAB1A, RAB2, RAB27A, RAB3A, RAB4A, RAB5A, RAB6A, RAB7, RAB9A 9 ACTA1(3), RAB27A(2), RAB3A(2), RAB4A(1), RAB6A(2) 1008483 10 8 10 2 3 6 0 1 0 0 0.71 1.00 385 HSA04650_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY Genes involved in natural killer cell mediated cytotoxicity ARAF, BID, BRAF, CASP3, CD244, CD247, CD48, CHP, CSF2, FAS, FASLG, FCER1G, FCGR3A, FCGR3B, FYN, GRB2, GZMB, HCST, HLA-A, HLA-B, HLA-C, HLA-E, HLA-G, HRAS, ICAM1, ICAM2, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IFNG, IFNGR1, IFNGR2, ITGAL, ITGB2, KIR2DL1, KIR2DL2, KIR2DL3, KIR2DL4, KIR2DL5A, KIR2DS1, KIR2DS2, KIR3DL1, KIR3DL2, KLRC1, KLRC2, KLRC3, KLRD1, KLRK1, KRAS, LAT, LCK, LCP2, LOC652578, MAP2K1, MAP2K2, MAPK1, MAPK3, MICA, MICB, NCR1, NCR2, NCR3, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NRAS, PAK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLCG1, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRF1, PRKCA, PRKCB1, PRKCG, PTK2B, PTPN11, PTPN6, RAC1, RAC2, RAC3, RAF1, SH2D1A, SH2D1B, SH3BP2, SHC1, SHC2, SHC3, SHC4, SOS1, SOS2, SYK, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFSF10, TYROBP, ULBP1, ULBP2, ULBP3, VAV1, VAV2, VAV3, ZAP70 120 ARAF(3), BID(1), CASP3(1), CD244(3), CD247(2), FASLG(1), FYN(4), GRB2(2), GZMB(1), HLA-A(1), HLA-B(3), HLA-C(2), HLA-E(1), HLA-G(1), ICAM1(2), ICAM2(1), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), IFNAR1(3), IFNAR2(1), IFNB1(1), IFNG(1), IFNGR1(2), IFNGR2(1), ITGAL(5), ITGB2(4), KIR2DL1(2), KIR2DL3(1), KIR2DL4(2), KIR3DL1(3), KIR3DL2(3), KLRC3(2), KLRD1(1), KLRK1(3), LCK(2), LCP2(2), MAP2K1(3), MAPK1(2), MAPK3(2), MICB(1), NCR1(1), NCR3(1), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), PAK1(4), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLCG1(4), PLCG2(9), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKCA(2), PRKCG(8), PTK2B(1), PTPN11(2), PTPN6(4), RAF1(4), SH2D1A(2), SH2D1B(1), SHC1(3), SHC3(1), SHC4(5), SOS1(5), SOS2(9), TNFRSF10A(3), TNFRSF10B(2), TNFSF10(1), ULBP1(2), ULBP2(2), VAV1(11), VAV2(2), VAV3(10), ZAP70(4) 25156345 249 61 244 69 81 57 10 69 30 2 0.71 1.00 386 THELPERPATHWAY Helper T cells coordinate the actions of B cells, macrophages, and other immune cells via surface molecules such as T cell receptor/CD3 and their characteristic marker CD4. CD2, CD28, CD3D, CD3E, CD3G, CD3Z, CD4, ICAM1, ITGAL, ITGB2, PTPRC, THY1, TRA@, TRB@ 11 CD2(3), CD28(1), CD3D(1), CD3G(2), CD4(2), ICAM1(2), ITGAL(5), ITGB2(4), PTPRC(9) 2622936 29 18 29 11 6 12 0 6 5 0 0.71 1.00 387 RANKLPATHWAY RANK is a TNF-type receptor that promotes osteoclast differentiation and consequent bone resorbtion on binding RANK ligand produced by osteoblasts. FOS, FOSL1, FOSL2, IFNAR1, IFNAR2, IFNB1, ISGF3G, MAPK8, NFKB1, PRKR, RELA, TNFRSF11A, TNFSF11, TRAF6 12 FOSL2(1), IFNAR1(3), IFNAR2(1), IFNB1(1), MAPK8(2), NFKB1(3), RELA(2), TNFRSF11A(2), TNFSF11(1), TRAF6(4) 2570779 20 14 20 7 7 7 0 1 5 0 0.71 1.00 388 HSA00512_O_GLYCAN_BIOSYNTHESIS Genes involved in O-glycan biosynthesis B3GNT6, B4GALT5, C1GALT1, C1GALT1C1, GALNT1, GALNT10, GALNT11, GALNT12, GALNT13, GALNT14, GALNT17, GALNT2, GALNT3, GALNT4, GALNT5, GALNT6, GALNT7, GALNT8, GALNT9, GALNTL1, GALNTL2, GALNTL4, GALNTL5, GCNT1, GCNT3, GCNT4, OGT, ST3GAL1, ST3GAL2, ST6GALNAC1, WBSCR17 28 B4GALT5(2), C1GALT1C1(2), GALNT1(2), GALNT10(5), GALNT11(4), GALNT12(1), GALNT13(5), GALNT2(3), GALNT3(4), GALNT5(6), GALNT6(2), GALNT7(2), GALNT8(1), GALNT9(2), GALNTL1(3), GALNTL2(6), GALNTL4(1), GALNTL5(5), GCNT1(3), GCNT3(2), GCNT4(5), OGT(4), ST3GAL1(1), ST3GAL2(1), ST6GALNAC1(2) 6992059 74 31 74 21 28 18 1 15 12 0 0.72 1.00 389 MITRPATHWAY The MyoD/MEF2 transcription factors induce muscle cell differentiation and are repressed by the transcriptional repressor MITR. CAMK1, CAMK1G, HDAC9, MEF2A, MEF2B, MEF2C, MEF2D, MYOD1, YWHAH 9 CAMK1(1), CAMK1G(3), HDAC9(11), MEF2A(3), MEF2C(7), MEF2D(1) 1945869 26 13 26 12 8 7 0 11 0 0 0.72 1.00 390 UREACYCLEPATHWAY Ammonia released from amino acid deamination is used to produce carbamoyl phosphate, which is used to convert ornithine to citrulline, from which urea is eventually formed. ARG1, ASL, ASS, CPS1, GLS, GLUD1, GOT1 6 ARG1(1), CPS1(8), GLUD1(2), GOT1(5) 1766450 16 10 16 4 4 5 0 4 3 0 0.72 1.00 391 G2PATHWAY Activated Cdc2-cyclin B kinase regulates the G2/M transition; DNA damage stimulates the DNA-PK/ATM/ATR kinases, which inactivate Cdc2. ATM, ATR, BRCA1, CCNB1, CDC2, CDC25A, CDC25B, CDC25C, CDC34, CDKN1A, CDKN2D, CHEK1, CHEK2, EP300, GADD45A, MDM2, MYT1, PLK, PRKDC, RPS6KA1, TP53, WEE1, YWHAH, YWHAQ 20 ATR(13), BRCA1(5), CCNB1(2), CDC25A(2), CDC25B(5), CDC25C(3), CDKN1A(1), CHEK1(1), CHEK2(1), EP300(13), MDM2(4), MYT1(8), PRKDC(13), RPS6KA1(1), WEE1(3), YWHAQ(1) 8429341 76 34 76 19 22 24 3 19 8 0 0.72 1.00 392 TCYTOTOXICPATHWAY Cytotoxic T cells release perforin and granzyme to lyse foreign cell targets and express Fas ligand to promote Fas-induced apoptosis. CD2, CD28, CD3D, CD3E, CD3G, CD3Z, CD8A, ICAM1, ITGAL, ITGB2, PTPRC, THY1, TRA@, TRB@ 11 CD2(3), CD28(1), CD3D(1), CD3G(2), ICAM1(2), ITGAL(5), ITGB2(4), PTPRC(9) 2486294 27 17 27 9 6 10 0 6 5 0 0.72 1.00 393 HSA00410_BETA_ALANINE_METABOLISM Genes involved in beta-alanine metabolism ABAT, ABP1, ACADM, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AOC2, AOC3, CNDP1, DPYD, DPYS, ECHS1, EHHADH, GAD1, GAD2, HADHA, HIBCH, MLYCD, SMS, SRM, UPB1 25 ABAT(5), ABP1(1), ACADM(3), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), AOC2(4), AOC3(4), CNDP1(3), DPYD(8), DPYS(6), ECHS1(2), EHHADH(2), GAD1(7), GAD2(4), HADHA(2), MLYCD(1), SMS(2), UPB1(3) 6290950 77 31 77 17 28 21 1 21 6 0 0.72 1.00 394 HSA00632_BENZOATE_DEGRADATION_VIA_COA_LIGATION Genes involved in benzoate degradation via CoA ligation ACAT1, ACAT2, ACOT11, ACYP1, ACYP2, ARD1A, CARKL, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ECHS1, EHHADH, ESCO1, ESCO2, FN3K, GCDH, HADHA, ITGB1BP3, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1, YOD1 23 ACAT1(1), ACAT2(2), ACOT11(3), ACYP1(1), DHRS1(1), DHRS2(2), DHRS3(2), ECHS1(2), EHHADH(2), ESCO1(7), ESCO2(3), GCDH(3), HADHA(2), ITGB1BP3(1), MYST3(13), MYST4(5), PNPLA3(4), SH3GLB1(3), YOD1(1) 5917506 58 29 58 16 25 14 1 10 8 0 0.72 1.00 395 PYRUVATE_METABOLISM ACACA, ACAS2, ACAS2L, ACAT1, ACAT2, ACYP1, ACYP2, ADH5, AKR1B1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, CACH_1, DLAT, DLD, GLO1, GRHPR, HAGH, HAGHL, LDHA, LDHB, LDHC, LDHD, MDH1, MDH2, ME1, ME2, ME3, PC, PCK1, PDHA1, PDHA2, PDHB, PKLR, PKM2 37 ACACA(14), ACAT1(1), ACAT2(2), ACYP1(1), ADH5(1), AKR1B1(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), DLAT(2), LDHA(1), LDHB(1), LDHC(2), LDHD(1), MDH1(1), MDH2(1), ME1(7), ME2(3), ME3(4), PC(3), PDHA1(4), PDHA2(6), PDHB(2), PKM2(2) 8597250 89 36 89 22 32 23 1 23 10 0 0.73 1.00 396 KERATINOCYTEPATHWAY Keratinocyte differentiation, which models the differentiation of epidermal cells, requires the four main MAP kinase pathways. BCL2, CEBPA, CHUK, DAXX, EGF, EGFR, ETS1, ETS2, FOS, HOXA7, HRAS, IKBKB, JUN, MAP2K1, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K1, MAP3K14, MAP3K5, MAPK1, MAPK13, MAPK14, MAPK3, MAPK8, NFKB1, NFKBIA, PPP2CA, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, RAF1, RELA, RIPK1, SP1, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TRAF2 41 BCL2(1), CHUK(4), EGF(3), EGFR(10), ETS2(2), HOXA7(1), IKBKB(2), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAP3K14(2), MAP3K5(5), MAPK1(2), MAPK14(3), MAPK3(2), MAPK8(2), NFKB1(3), PPP2CA(1), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCQ(4), RAF1(4), RELA(2), RIPK1(2), SP1(2), TNFRSF1A(1), TRAF2(1) 11306002 91 45 90 30 44 22 3 19 3 0 0.73 1.00 397 HSA00062_FATTY_ACID_ELONGATION_IN_MITOCHONDRIA Genes involved in fatty acid elongation in mitochondria ACAA2, ECHS1, HADH, HADHA, HADHB, HSD17B10, HSD17B4, MECR, PPT1, PPT2 10 ECHS1(2), HADH(1), HADHA(2), HADHB(1), HSD17B10(1), HSD17B4(3), MECR(1), PPT2(1) 1973987 12 10 12 5 2 2 0 3 5 0 0.73 1.00 398 CITRATE_CYCLE_TCA_CYCLE ACO1, ACO2, CS, DLD, DLST, DLSTP, FH, IDH1, IDH2, IDH3A, IDH3B, IDH3G, MDH1, MDH2, PC, PCK1, SDHA, SDHA, SDHAL2, SDHB, SUCLA2, SUCLG1, SUCLG2 20 ACO1(3), ACO2(2), FH(1), IDH1(3), IDH2(7), IDH3A(1), IDH3G(2), MDH1(1), MDH2(1), PC(3), SDHA(5), SDHB(2), SUCLA2(3), SUCLG1(1) 4827572 35 25 35 13 17 7 0 7 4 0 0.73 1.00 399 FMLPPATHWAY The fMLP receptor is a G-protein coupled receptor in neutrophils that recognizes formylated bacterial peptides and activates NADPH oxidase. CALM1, CALM2, CALM3, CAMK1, CAMK1G, ELK1, FPR1, GNA15, GNB1, GNGT1, HRAS, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAP3K1, MAPK1, MAPK14, MAPK3, NCF1, NCF2, NFATC1, NFATC2, NFATC3, NFATC4, NFKB1, NFKBIA, PAK1, PIK3C2G, PLCB1, PPP3CA, PPP3CB, PPP3CC, RAC1, RAF1, RELA, SYT1 37 CAMK1(1), CAMK1G(3), FPR1(2), GNA15(3), GNB1(1), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAPK1(2), MAPK14(3), MAPK3(2), NCF1(1), NCF2(1), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NFKB1(3), PAK1(4), PIK3C2G(7), PLCB1(8), PPP3CA(1), PPP3CB(4), PPP3CC(3), RAF1(4), RELA(2), SYT1(1) 9017522 81 37 80 27 31 16 3 16 15 0 0.73 1.00 400 HSA00910_NITROGEN_METABOLISM Genes involved in nitrogen metabolism AMT, ASNS, ASRGL1, CA1, CA12, CA13, CA14, CA2, CA3, CA4, CA5A, CA5B, CA6, CA7, CA8, CA9, CPS1, CTH, GLS, GLS2, GLUD1, GLUD2, GLUL, HAL 24 ASNS(1), CA1(1), CA13(1), CA14(2), CA2(1), CA3(1), CA4(1), CA5A(1), CA6(2), CA8(2), CA9(2), CPS1(8), CTH(1), GLS2(2), GLUD1(2), GLUD2(4), GLUL(3), HAL(3) 4900677 38 25 38 20 16 10 0 5 7 0 0.74 1.00 401 MITOCHONDRIAL_FATTY_ACID_BETAOXIDATION ACADL, ACADM, ACADS, ACADVL, ACSL1, ACSL3, ACSL4, CPT1A, CPT2, DCI, EHHADH, HADHA, HADHSC, MGC5139, PECR, SCP2, SLC25A20 15 ACADM(3), ACADVL(1), ACSL1(3), ACSL3(6), ACSL4(4), CPT1A(5), CPT2(1), EHHADH(2), HADHA(2), SCP2(3), SLC25A20(1) 3919403 31 19 31 11 9 8 0 10 4 0 0.74 1.00 402 MEF2DPATHWAY Mef2 transcription factors promote calcium-induced apoptosis in T cells and are regulated by MAP kinases and histone deacetylases. CABIN1, CALM1, CALM2, CALM3, CAPN2, CAPNS1, CAPNS2, EP300, HDAC1, HDAC2, MEF2D, NFATC1, NFATC2, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, SYT1, TRA@, TRB@ 18 CABIN1(9), CAPN2(5), CAPNS1(1), CAPNS2(1), EP300(13), HDAC1(2), HDAC2(2), MEF2D(1), NFATC1(1), NFATC2(3), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKCA(2), SYT1(1) 5565002 49 27 49 12 20 12 1 7 9 0 0.74 1.00 403 P35ALZHEIMERSPATHWAY p35, a neuron-specific activator of cyclin-dependent kinase 5, is cleaved to p25 in Alzheimer's disease and promotoes hyperphosphorylated tau formation and apoptosis. APP, CAPN1, CAPNS1, CAPNS2, CDK5, CDK5R1, CSNK1A1, CSNK1D, GSK3B, MAPT, PPP2CA 11 CAPN1(2), CAPNS1(1), CAPNS2(1), CDK5R1(1), CSNK1A1(2), CSNK1D(3), GSK3B(7), MAPT(4), PPP2CA(1) 2212426 22 14 22 4 9 6 0 4 3 0 0.75 1.00 404 HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS Genes involved in glycolysis and gluconeogenesis ACSS1, ACSS2, ACYP1, ACYP2, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH7A1, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, G6PC2, GALM, GAPDH, GAPDHS, GCK, GPI, HK1, HK2, HK3, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKL, PFKM, PFKP, PGAM1, PGAM2, PGAM4, PGK1, PGK2, PGM1, PGM3, PKLR, PKM2, TPI1 64 ACSS1(3), ACSS2(5), ACYP1(1), ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH3B1(2), ALDH3B2(1), ALDH7A1(1), ALDH9A1(1), ALDOA(1), ALDOB(5), ALDOC(1), DLAT(2), ENO2(3), ENO3(3), FBP2(2), G6PC(3), GALM(2), GCK(1), GPI(1), HK1(6), HK2(3), HK3(4), LDHA(1), LDHAL6A(2), LDHAL6B(1), LDHB(1), LDHC(2), PDHA1(4), PDHA2(6), PDHB(2), PFKL(1), PFKM(1), PFKP(2), PGAM1(3), PGAM2(1), PGK1(3), PGK2(6), PGM1(2), PGM3(4), PKM2(2), TPI1(1) 13367333 134 49 133 40 46 33 1 46 8 0 0.75 1.00 405 SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES Genes related to the insulin receptor pathway AKT1, AKT2, AKT3, BRD4, CAP1, CBL, CDC42, CDKN2A, F2RL2, FLOT1, FLOT2, FOXO1A, GRB2, GSK3A, GSK3B, IGFBP1, INPPL1, IRS1, IRS2, IRS4, LNPEP, MAPK1, MAPK3, PARD3, PARD6A, PDK1, PIK3CA, PIK3CD, PIK3R1, PPYR1, PSCD3, PTEN, PTPN1, RAF1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SERPINB6, SFN, SHC1, SLC2A4, SORBS1, SOS1, SOS2, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 47 AKT1(2), AKT2(5), BRD4(4), CBL(2), CDKN2A(1), F2RL2(2), FLOT1(3), GRB2(2), GSK3A(2), GSK3B(7), IGFBP1(2), INPPL1(3), IRS1(5), IRS4(11), LNPEP(6), MAPK1(2), MAPK3(2), PARD3(5), PIK3CD(2), PIK3R1(5), PPYR1(1), PTPN1(4), RAF1(4), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KB1(3), SERPINB6(1), SHC1(3), SLC2A4(3), SORBS1(7), SOS1(5), SOS2(9), YWHAB(2), YWHAE(3), YWHAQ(1) 12964693 131 48 128 41 42 29 4 41 15 0 0.75 1.00 406 IL10PATHWAY The cytokine IL-10 inhibits the inflammatory response by macrophages via activation of heme oxygenase 1. BLVRA, BLVRB, HMOX1, IL10, IL10RA, IL10RB, IL1A, IL6, JAK1, STAT1, STAT3, STAT5A, TNF 13 BLVRA(2), BLVRB(1), HMOX1(2), IL10(1), IL10RA(1), IL10RB(4), IL1A(1), IL6(1), JAK1(3), STAT1(6), STAT3(2) 2821073 24 16 22 16 10 4 1 8 1 0 0.75 1.00 407 PURINE_METABOLISM 1_Sep, ADA, ADCY1, ADCY2, ADCY3, ADCY4, ADCY5, ADCY6, ADCY7, ADCY8, ADK, ADSL, ADSS, AK1, AK2, AK5, ALLC, AMPD1, AMPD2, AMPD3, APRT, ATIC, ATP1B1, ATP5A1, ATP5B, ATP5C1, ATP5D, ATP5F1, ATP5G1, ATP5G2, ATP5G3, ATP5H, ATP5I, ATP5J, ATP5J2, CANT1, DCK, DGUOK, ECGF1, ENPP1, ENPP3, ENTPD1, ENTPD2, FHIT, GART, GDA, GMPS, GUCY1A2, GUCY1A3, GUCY1B2, GUCY1B3, GUCY2C, GUCY2D, GUCY2F, GUK1, HPRT1, IMPDH1, IMPDH2, ITPA, NME1, NME2, NP, NPR1, NPR2, NT5C, NT5E, NT5M, NUDT2, PAICS, PAPSS1, PAPSS2, PDE1A, PDE4A, PDE4B, PDE4C, PDE4D, PDE5A, PDE6B, PDE6C, PDE6G, PDE7B, PDE8A, PDE9A, PFAS, PKLR, PKM2, POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT, POLS, PPAT, PRPS1, PRPS1L1, PRPS2, PRUNE, RRM1, RRM2, SAC 109 ADA(2), ADCY1(4), ADCY2(12), ADCY3(1), ADCY4(9), ADCY5(8), ADCY6(1), ADCY7(3), ADCY8(11), ADK(1), ADSL(7), ADSS(1), AK5(4), ALLC(3), AMPD1(7), AMPD2(4), AMPD3(2), ATIC(4), ATP1B1(1), ATP5A1(2), ATP5B(4), ATP5C1(2), ATP5D(1), ATP5F1(1), ATP5G3(1), ATP5J2(1), DCK(1), ENPP1(4), ENPP3(3), ENTPD1(2), FHIT(1), GART(3), GMPS(5), GUCY1A2(8), GUCY1B3(7), GUCY2C(7), GUCY2D(4), GUCY2F(7), HPRT1(2), IMPDH1(1), IMPDH2(1), ITPA(2), NPR1(6), NPR2(9), NT5E(2), NT5M(1), PAPSS1(1), PAPSS2(2), PDE1A(3), PDE4A(4), PDE4B(2), PDE4C(2), PDE4D(3), PDE5A(3), PDE6B(5), PDE6C(8), PDE7B(3), PDE8A(1), PDE9A(5), PFAS(1), PKM2(2), POLB(1), POLD1(5), POLD2(1), POLE(17), POLG(4), POLQ(8), POLR1B(6), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLRMT(1), PPAT(3), PRPS1L1(1), PRPS2(2), RRM1(1), RRM2(2) 29931447 285 71 281 80 98 68 8 76 35 0 0.75 1.00 408 ONE_CARBON_POOL_BY_FOLATE ALDH1L1, AMT, ATIC, ATP6V0C, SHMT1, DHFR, GART, MTHFD1, MTHFD1L, MTHFD2, MTHFR, MTHFS, MTR, SHMT1, SHMT2, TYMS 15 ALDH1L1(3), ATIC(4), GART(3), MTHFD1(6), MTHFD1L(6), MTHFR(6), MTHFS(1), MTR(6), SHMT1(1), SHMT2(2), TYMS(2) 4191940 40 23 40 10 17 9 0 11 3 0 0.75 1.00 409 ST_PHOSPHOINOSITIDE_3_KINASE_PATHWAY The phosphoinositide-3 kinase pathway produces the lipid second messenger PIP3 and regulates cell growth, survival, and movement. A1BG, AKT1, AKT2, AKT3, BAD, BTK, CDKN2A, CSL4, DAF, DAPP1, FOXO1A, GRB2, GSK3A, GSK3B, IARS, IGFBP1, INPP5D, P14, PDK1, PIK3CA, PPP1R13B, PSCD3, PTEN, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SFN, SHC1, SOS1, SOS2, TEC, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 31 AKT1(2), AKT2(5), BAD(1), BTK(6), CDKN2A(1), DAPP1(1), GRB2(2), GSK3A(2), GSK3B(7), IARS(5), IGFBP1(2), INPP5D(2), PPP1R13B(5), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KB1(3), SHC1(3), SOS1(5), SOS2(9), TEC(1), YWHAB(2), YWHAE(3), YWHAQ(1) 7716368 80 33 79 20 25 17 3 23 12 0 0.76 1.00 410 CAPROLACTAM_DEGRADATION AKR1A1, ECHS1, EHHADH, HADHA, SDS 5 ECHS1(2), EHHADH(2), HADHA(2), SDS(2) 1140763 8 6 8 1 3 2 0 0 3 0 0.76 1.00 411 GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM ACO1, ACO2, CS, GRHPR, HAO1, HAO2, HYI, MDH1, MDH2, MTHFD1, MTHFD1L, MTHFD2 12 ACO1(3), ACO2(2), HAO1(5), HAO2(3), HYI(1), MDH1(1), MDH2(1), MTHFD1(6), MTHFD1L(6) 2990266 28 17 27 8 11 5 0 10 2 0 0.76 1.00 412 DCPATHWAY Dendritic cells internalize and present antigen, after which they migrate to lymphocyte-rich tissues and induce T and B cell differentiation. ANPEP, CD2, CD33, CD5, CD7, CSF2, IFNA1, IFNB1, IFNG, IL10, IL12A, IL12B, IL13, IL3, IL4, IL5, ITGAX, TLR2, TLR4, TLR7, TLR9, TNFRSF5 21 ANPEP(5), CD2(3), CD33(1), CD5(2), CD7(1), IFNA1(1), IFNB1(1), IFNG(1), IL10(1), IL12B(2), IL13(1), IL3(3), IL4(3), ITGAX(4), TLR2(2), TLR4(7), TLR7(4), TLR9(4) 4331870 46 22 45 19 18 7 4 15 2 0 0.76 1.00 413 PROTEASOMEPATHWAY Ubiquitinated proteins are targeted for proteolytic degradation by the proteasome, where they are unfolded and degraded to small peptides in an ATP-dependent process. PSMA1, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, PSMB2, PSMB3, PSMB4, PSMB5, PSMB6, PSMB7, PSMC3, PSMD14, RPN1, RPN2, UBE1, UBE2A, UBE3A 20 PSMA1(1), PSMA2(1), PSMA3(2), PSMA4(2), PSMA5(1), PSMB2(2), PSMB5(2), PSMB6(2), PSMC3(3), UBE2A(2), UBE3A(6) 3041812 24 15 24 11 8 5 2 6 3 0 0.77 1.00 414 HSA04130_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT Genes involved in SNARE interactions in vesicular transport BET1, BET1L, BNIP1, C1orf142, GOSR1, GOSR2, SEC22B, SNAP23, SNAP25, SNAP29, STX10, STX11, STX12, STX16, STX17, STX18, STX19, STX2, STX3, STX4, STX5, STX6, STX7, STX8, TSNARE1, USE1, VAMP1, VAMP2, VAMP3, VAMP4, VAMP5, VAMP7, VAMP8, VTI1A, VTI1B, YKT6 34 BET1(1), BNIP1(1), GOSR1(2), GOSR2(2), SEC22B(2), SNAP23(1), SNAP25(1), SNAP29(3), STX11(1), STX12(3), STX16(3), STX19(1), STX2(2), STX3(2), STX4(2), STX5(3), STX6(1), STX7(2), STX8(2), TSNARE1(1), VAMP1(1), VAMP3(1), VAMP4(2), VAMP5(2), VAMP8(1), VTI1A(1), VTI1B(1) 3817889 45 22 44 14 19 4 0 12 10 0 0.77 1.00 415 HSA03320_PPAR_SIGNALING_PATHWAY Genes involved in PPAR signaling pathway ACAA1, ACADL, ACADM, ACOX1, ACOX2, ACOX3, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADIPOQ, ANGPTL4, APOA1, APOA2, APOA5, APOC3, AQP7, CD36, CPT1A, CPT1B, CPT1C, CPT2, CYP27A1, CYP4A11, CYP4A22, CYP7A1, CYP8B1, DBI, EHHADH, FABP1, FABP2, FABP3, FABP4, FABP5, FABP5L1, FABP6, FABP7, FADS2, GK, GK2, HMGCS2, ILK, LOC642956, LPL, ME1, MMP1, NR1H3, OLR1, PCK1, PCK2, PDPK1, PLIN, PLTP, PPARA, PPARD, PPARG, RXRA, RXRB, RXRG, SCD, SCP2, SLC27A1, SLC27A2, SLC27A4, SLC27A5, SLC27A6, SORBS1, UBC, UCP1 66 ACAA1(2), ACADM(3), ACOX1(3), ACOX2(2), ACOX3(5), ACSL1(3), ACSL3(6), ACSL4(4), ACSL5(4), ACSL6(5), ADIPOQ(4), APOA2(1), APOA5(1), AQP7(1), CD36(1), CPT1A(5), CPT1B(5), CPT2(1), CYP27A1(3), CYP4A11(2), CYP4A22(2), CYP7A1(4), CYP8B1(2), EHHADH(2), FABP1(1), FABP2(1), FABP3(1), FABP4(1), FABP5(1), FABP6(1), FADS2(3), GK(3), GK2(3), LPL(6), ME1(7), MMP1(1), NR1H3(4), OLR1(1), PCK2(3), PDPK1(1), PLTP(5), PPARA(1), PPARD(1), PPARG(1), RXRA(1), RXRB(2), RXRG(3), SCD(2), SCP2(3), SLC27A1(2), SLC27A2(2), SLC27A4(1), SLC27A5(3), SLC27A6(4), SORBS1(7), UCP1(1) 15058828 148 52 147 48 42 39 3 48 16 0 0.77 1.00 416 CALCINEURINPATHWAY Increased intracellular calcium activates the phosphatase calcineurin in differentiating keratinocytes. CALM1, CALM2, CALM3, CDKN1A, GNAQ, MARCKS, NFATC1, NFATC2, NFATC3, NFATC4, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKCA, PRKCB1, SP1, SP3, SYT1 18 CDKN1A(1), GNAQ(3), MARCKS(1), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKCA(2), SP1(2), SP3(2), SYT1(1) 4792200 36 26 36 12 14 4 0 10 8 0 0.77 1.00 417 HSA04115_P53_SIGNALING_PATHWAY Genes involved in p53 signaling pathway APAF1, ATM, ATR, BAI1, BAX, BBC3, BID, CASP3, CASP8, CASP9, CCNB1, CCNB2, CCNB3, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNG1, CCNG2, CD82, CDC2, CDK2, CDK4, CDK6, CDKN1A, CDKN2A, CHEK1, CHEK2, CYCS, DDB2, EI24, FAS, GADD45A, GADD45B, GADD45G, GTSE1, IGF1, IGFBP3, LRDD, MDM2, MDM4, P53AIP1, PERP, PMAIP1, PPM1D, PTEN, RCHY1, RFWD2, RPRM, RRM2, RRM2B, SCOTIN, SERPINB5, SERPINE1, SESN1, SESN2, SESN3, SFN, SIAH1, STEAP3, THBS1, TNFRSF10B, TP53, TP53I3, TP73, TSC2, ZMAT3 60 APAF1(7), ATR(13), BAI1(2), BAX(1), BID(1), CASP3(1), CASP9(2), CCNB1(2), CCNB2(2), CCNB3(4), CCND2(1), CCND3(1), CCNE1(3), CCNE2(1), CCNG1(2), CDK2(2), CDK4(2), CDK6(1), CDKN1A(1), CDKN2A(1), CHEK1(1), CHEK2(1), IGF1(2), IGFBP3(2), MDM2(4), MDM4(2), PPM1D(4), RCHY1(2), RFWD2(4), RPRM(1), RRM2(2), SERPINE1(1), SESN1(2), SESN2(3), SESN3(5), SIAH1(1), STEAP3(1), THBS1(8), TNFRSF10B(2), TSC2(1), ZMAT3(3) 12963022 102 46 102 28 28 27 4 33 10 0 0.77 1.00 418 NOS1PATHWAY Glutamate stimulates NMDA-mediates calcium influx, which promotes nitric oxide synthesis from arginine by neuronal nitric oxide synthase, activating guanylate cyclase. CALM1, CALM2, CALM3, DLG4, GRIN1, GRIN2A, GRIN2B, GRIN2C, GRIN2D, NOS1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, SYT1 21 DLG4(2), GRIN1(1), GRIN2A(15), GRIN2B(8), GRIN2C(2), GRIN2D(3), NOS1(5), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), SYT1(1) 5933823 54 29 54 31 25 12 1 9 7 0 0.77 1.00 419 HSA00650_BUTANOATE_METABOLISM Genes involved in butanoate metabolism AACS, AADAC, ABAT, ACADS, ACAT1, ACAT2, ACSM1, AKR1B10, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH5A1, ALDH7A1, ALDH9A1, BDH1, BDH2, DDHD1, ECHS1, EHHADH, GAD1, GAD2, HADH, HADHA, HMGCL, HMGCS1, HMGCS2, HSD17B10, HSD17B4, HSD3B7, ILVBL, L2HGDH, OXCT1, OXCT2, PDHA1, PDHA2, PDHB, PLA1A, PPME1, PRDX6, RDH11, RDH12, RDH13, RDH14 45 AACS(3), AADAC(2), ABAT(5), ACAT1(1), ACAT2(2), ACSM1(3), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH5A1(4), ALDH7A1(1), ALDH9A1(1), BDH1(1), DDHD1(1), ECHS1(2), EHHADH(2), GAD1(7), GAD2(4), HADH(1), HADHA(2), HMGCS1(1), HSD17B10(1), HSD17B4(3), HSD3B7(2), ILVBL(2), L2HGDH(3), OXCT1(3), OXCT2(1), PDHA1(4), PDHA2(6), PDHB(2), PLA1A(3), PPME1(2), PRDX6(2), RDH12(2), RDH13(1) 9572308 98 39 98 27 41 25 0 23 9 0 0.77 1.00 420 N_GLYCAN_BIOSYNTHESIS ALG3, ALG5, B4GALT1, B4GALT2, B4GALT3, B4GALT5, DDOST, DPAGT1, DPM1, FUT8, GCS1, MAN1A1, MAN1B1, MGAT1, MGAT2, MGAT3, MGAT4A, MGAT4B, MGAT5, RPN1, RPN2, ST6GAL1 21 ALG3(1), ALG5(2), B4GALT1(5), B4GALT2(3), B4GALT3(6), B4GALT5(2), DDOST(2), DPAGT1(1), DPM1(1), FUT8(1), MAN1A1(4), MAN1B1(2), MGAT1(1), MGAT3(2), MGAT4A(2), MGAT4B(1), MGAT5(3), ST6GAL1(1) 4557262 40 26 40 10 18 8 2 11 1 0 0.77 1.00 421 NEUTROPHILPATHWAY Neutrophils are phagocytotic leukocytes that destroy foreign cells with reactive oxygen species or enzymatic digestion and express CD11 and CD18. CD44, ICAM1, ITGAL, ITGAM, ITGB2, PECAM1, SELE, SELL 8 CD44(3), ICAM1(2), ITGAL(5), ITGAM(5), ITGB2(4), PECAM1(1), SELE(2) 2710733 22 16 22 6 8 8 0 4 2 0 0.78 1.00 422 O_GLYCAN_BIOSYNTHESIS GALNT1, GALNT10, GALNT2, GALNT3, GALNT4, GALNT6, GALNT7, GALNT8, GALNT9, GCNT1, SIAT4A, SIAT4B, ST3GAL1, ST3GAL2, ST3GAL4, WBSCR17 13 GALNT1(2), GALNT10(5), GALNT2(3), GALNT3(4), GALNT6(2), GALNT7(2), GALNT8(1), GALNT9(2), GCNT1(3), ST3GAL1(1), ST3GAL2(1), ST3GAL4(2) 3068793 28 17 28 12 10 8 0 4 6 0 0.78 1.00 423 HSA00601_GLYCOSPHINGOLIPID_BIOSYNTHESIS_LACTOSERIES Genes involved in glycosphingolipid biosynthesis - lactoseries ABO, B3GALT1, B3GALT2, B3GALT5, B3GNT5, FUT1, FUT2, FUT3, ST3GAL3, ST3GAL4 10 ABO(2), B3GALT1(1), B3GALT2(3), B3GALT5(2), B3GNT5(1), FUT1(1), FUT2(1), FUT3(3), ST3GAL3(4), ST3GAL4(2) 1673366 20 13 20 3 9 4 0 5 2 0 0.79 1.00 424 HSA00592_ALPHA_LINOLENIC_ACID_METABOLISM Genes involved in alpha-Linolenic acid metabolism ACOX1, ACOX3, FADS2, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6 15 ACOX1(3), ACOX3(5), FADS2(3), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2) 2408213 20 13 20 6 8 5 1 4 2 0 0.79 1.00 425 MTORPATHWAY Mammalian target of rapamycin (mTOR) senses mitogenic factors and nutrients, including ATP, and induces cell proliferation. AKT1, EIF3S10, EIF4A1, EIF4A2, EIF4B, EIF4E, EIF4EBP1, EIF4G1, EIF4G2, EIF4G3, FKBP1A, FRAP1, MKNK1, PDK2, PDPK1, PIK3CA, PIK3R1, PPP2CA, PTEN, RPS6, RPS6KB1, TSC1, TSC2 19 AKT1(2), EIF4A2(4), EIF4B(1), EIF4G1(8), EIF4G2(7), EIF4G3(8), MKNK1(1), PDK2(1), PDPK1(1), PIK3R1(5), PPP2CA(1), RPS6KB1(3), TSC1(3), TSC2(1) 5703700 46 26 45 16 13 14 1 10 8 0 0.79 1.00 426 HSA00531_GLYCOSAMINOGLYCAN_DEGRADATION Genes involved in glycosaminoglycan degradation ARSB, GALNS, GLB1, GNS, GUSB, HEXA, HEXB, HGSNAT, HPSE, HPSE2, HYAL1, HYAL2, IDS, IDUA, LCT, NAGLU, SPAM1 17 ARSB(5), GALNS(4), GLB1(3), GNS(1), GUSB(2), HEXB(1), HGSNAT(6), HPSE(2), HPSE2(9), IDS(2), IDUA(1), LCT(15), NAGLU(3), SPAM1(1) 4840220 55 26 54 15 20 9 2 17 7 0 0.79 1.00 427 FEEDERPATHWAY Sugars such as mannose, galactose, and fructose are enzymatically converted to glucose via feeder pathways that lead to glycolysis. HK1, KHK, LCT, MPI, PGM1, PYGL, PYGM, TPI1, TREH 9 HK1(6), KHK(1), LCT(15), MPI(1), PGM1(2), PYGL(2), PYGM(2), TPI1(1), TREH(2) 3154809 32 21 32 13 10 10 1 11 0 0 0.79 1.00 428 EPOPATHWAY Erythropoietin, which activates the MAPK pathway, stimulates erythrocyte production and is an effective treatment for anemia. CSNK2A1, ELK1, EPO, EPOR, FOS, GRB2, HRAS, JAK2, JUN, MAP2K1, MAPK3, MAPK8, PLCG1, PTPN6, RAF1, SHC1, SOS1, STAT5A, STAT5B 19 CSNK2A1(4), GRB2(2), JAK2(6), MAP2K1(3), MAPK3(2), MAPK8(2), PLCG1(4), PTPN6(4), RAF1(4), SHC1(3), SOS1(5), STAT5B(2) 5065468 41 22 39 11 16 8 4 9 3 1 0.80 1.00 429 HSA00903_LIMONENE_AND_PINENE_DEGRADATION Genes involved in limonene and pinene degradation ACOT11, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, ARD1A, CYP2C19, CYP2C9, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, ECHS1, EHHADH, ESCO1, ESCO2, HADHA, LYCAT, MYST3, MYST4, NAT5, NAT6, PNPLA3, SH3GLB1, YOD1 25 ACOT11(3), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), CYP2C19(4), CYP2C9(4), DHRS1(1), DHRS2(2), DHRS3(2), ECHS1(2), EHHADH(2), ESCO1(7), ESCO2(3), HADHA(2), MYST3(13), MYST4(5), PNPLA3(4), SH3GLB1(3), YOD1(1) 7091873 78 30 78 21 33 20 1 16 8 0 0.80 1.00 430 STARCH_AND_SUCROSE_METABOLISM AGL, AMY1A, AMY1B, AMY1C, AMY2A, AMY2B, AMY2B, RNPC3, ENPP1, ENPP3, G6PC, GAA, GANAB, GBA3, GBE1, GCK, GPI, GUSB, GYS1, GYS2, HK1, HK2, HK3, MGAM, PGM1, PGM3, PYGB, PYGL, PYGM, SI, UCHL1, UCHL3, UGDH, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4, UXS1 41 AGL(8), AMY2A(3), ENPP1(4), ENPP3(3), G6PC(3), GANAB(4), GBA3(3), GBE1(4), GCK(1), GPI(1), GUSB(2), GYS1(1), GYS2(8), HK1(6), HK2(3), HK3(4), MGAM(9), PGM1(2), PGM3(4), PYGB(4), PYGL(2), PYGM(2), SI(12), UCHL1(1), UCHL3(1), UGDH(3), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2B15(2), UGT2B4(2), UXS1(6) 13124111 123 47 123 44 42 34 0 32 15 0 0.80 1.00 431 PPARAPATHWAY Peroxisome proliferators regulate gene expression via PPAR/RXR heterodimers which bind to peroxisome-proliferator response elements (PPREs). ACOX1, APOA1, APOA2, CD36, CITED2, CPT1B, CREBBP, DUSP1, DUT, EHHADH, EP300, FABP1, FAT, FRA8B, HSD17B4, HSPA1A, HSPCA, INS, JUN, LPL, MAPK1, MAPK3, ME1, MRPL11, MYC, NCOA1, NCOR1, NCOR2, NFKBIA, NOS2A, NR0B2, NR1H3, NR2F1, NRIP1, PDGFA, PIK3CA, PIK3R1, PPARA, PPARBP, PPARGC1, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PTGS2, RB1, RELA, RXRA, SP1, SRA1, STAT5A, STAT5B, TNF 47 ACOX1(3), APOA2(1), CD36(1), CITED2(1), CPT1B(5), CREBBP(21), DUSP1(2), EHHADH(2), EP300(13), FABP1(1), HSD17B4(3), LPL(6), MAPK1(2), MAPK3(2), ME1(7), NCOA1(6), NCOR1(7), NCOR2(2), NR1H3(4), NR2F1(2), NRIP1(5), PDGFA(1), PIK3R1(5), PPARA(1), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), PTGS2(2), RB1(4), RELA(2), RXRA(1), SP1(2), STAT5B(2) 13964490 125 45 125 41 34 34 4 32 20 1 0.80 1.00 432 GLUCONEOGENESIS ACYP1, ACYP2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GCK, GPI, HK1, HK2, HK3, LDHA, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKM, PFKP, PGAM1, PGK1, PGM1, PGM3, PKLR, PKM2, TPI1 53 ACYP1(1), ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH3B1(2), ALDH3B2(1), ALDH9A1(1), ALDOA(1), ALDOB(5), ALDOC(1), DLAT(2), ENO2(3), ENO3(3), FBP2(2), G6PC(3), GCK(1), GPI(1), HK1(6), HK2(3), HK3(4), LDHA(1), LDHB(1), LDHC(2), PDHA1(4), PDHA2(6), PDHB(2), PFKM(1), PFKP(2), PGAM1(3), PGK1(3), PGM1(2), PGM3(4), PKM2(2), TPI1(1) 11275498 120 44 119 32 40 31 1 42 6 0 0.80 1.00 433 GLYCOLYSIS ACYP1, ACYP2, ADH1A, ADH1A, ADH1B, ADH1C, ADH1B, ADH1C, ADH4, ADH6, ADH7, ADHFE1, AKR1A1, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH9A1, ALDOA, ALDOB, ALDOC, BPGM, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GCK, GPI, HK1, HK2, HK3, LDHA, LDHB, LDHC, PDHA1, PDHA2, PDHB, PFKM, PFKP, PGAM1, PGK1, PGM1, PGM3, PKLR, PKM2, TPI1 53 ACYP1(1), ADH1B(2), ADH1C(3), ADH4(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH3B1(2), ALDH3B2(1), ALDH9A1(1), ALDOA(1), ALDOB(5), ALDOC(1), DLAT(2), ENO2(3), ENO3(3), FBP2(2), G6PC(3), GCK(1), GPI(1), HK1(6), HK2(3), HK3(4), LDHA(1), LDHB(1), LDHC(2), PDHA1(4), PDHA2(6), PDHB(2), PFKM(1), PFKP(2), PGAM1(3), PGK1(3), PGM1(2), PGM3(4), PKM2(2), TPI1(1) 11275498 120 44 119 32 40 31 1 42 6 0 0.80 1.00 434 EGFR_SMRTEPATHWAY EGF receptor activation inhibits SMRT, a transcriptional co-repressor that interacts with transcription factor complexes and gene silencers. EGF, EGFR, MAP2K1, MAP3K1, MAPK14, NCOR2, RARA, RXRA, THRA, THRB, ZNF145 10 EGF(3), EGFR(10), MAP2K1(3), MAP3K1(6), MAPK14(3), NCOR2(2), RXRA(1), THRA(2), THRB(4) 4057725 34 21 34 13 17 7 2 6 2 0 0.80 1.00 435 TERPENOID_BIOSYNTHESIS FDFT1, FDPS, FDPS, LOC402397, IDI1, SQLE 4 FDFT1(2), IDI1(1), SQLE(1) 777290 4 4 4 3 1 2 0 0 1 0 0.80 1.00 436 HSA00565_ETHER_LIPID_METABOLISM Genes involved in ether lipid metabolism AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, AGPS, CHPT1, ENPP2, ENPP6, LYCAT, PAFAH1B1, PAFAH1B2, PAFAH1B3, PAFAH2, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLD1, PLD2, PPAP2A, PPAP2B, PPAP2C 30 AGPAT1(1), AGPAT3(3), AGPAT4(6), AGPAT6(1), AGPS(2), ENPP2(10), ENPP6(1), PAFAH1B1(3), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLD1(8), PLD2(1), PPAP2B(1) 5441028 46 26 45 21 17 13 1 12 3 0 0.80 1.00 437 BETAOXIDATIONPATHWAY Beta-Oxidation of Fatty Acids ACADL, ACADM, ACADS, ACAT1, ECHS1, HADHA 6 ACADM(3), ACAT1(1), ECHS1(2), HADHA(2) 1263694 8 6 8 2 0 2 0 2 4 0 0.80 1.00 438 HSA00240_PYRIMIDINE_METABOLISM Genes involved in pyrimidine metabolism AICDA, AK3, CAD, CANT1, CDA, CMPK, CTPS, CTPS2, DCK, DCTD, DHODH, DPYD, DPYS, DTYMK, DUT, ECGF1, ENTPD1, ENTPD3, ENTPD4, ENTPD5, ENTPD6, ENTPD8, ITPA, NME1, NME2, NME4, NME6, NME7, NP, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT2, PNPT1, POLA1, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLR1A, POLR1B, POLR1C, POLR1D, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLR3A, POLR3B, POLR3G, POLR3GL, POLR3H, POLR3K, PRIM1, PRIM2, RFC5, RRM1, RRM2, RRM2B, TK1, TK2, TXNRD1, TXNRD2, TYMS, UCK1, UCK2, UMPS, UPB1, UPP1, UPP2, UPRT, ZNRD1 86 AICDA(3), AK3(1), CAD(10), CDA(1), CTPS(3), CTPS2(4), DCK(1), DCTD(3), DHODH(3), DPYD(8), DPYS(6), ENTPD1(2), ENTPD3(5), ENTPD4(5), ENTPD5(1), ENTPD6(1), ITPA(2), NME6(3), NME7(3), NT5C1A(1), NT5C1B(9), NT5C2(3), NT5C3(2), NT5E(2), NT5M(1), PNPT1(5), POLA1(5), POLA2(2), POLD1(5), POLD2(1), POLD3(2), POLE(17), POLE3(1), POLR1A(7), POLR1B(6), POLR1C(2), POLR1D(2), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLR3A(7), POLR3B(6), POLR3GL(1), POLR3H(1), PRIM2(6), RFC5(2), RRM1(1), RRM2(2), TK1(1), TXNRD1(2), TXNRD2(2), TYMS(2), UCK2(1), UPB1(3), UPP2(1), UPRT(3) 19187651 194 57 193 47 55 57 4 56 22 0 0.80 1.00 439 INOSITOL_PHOSPHATE_METABOLISM IMPA1, INPP1, INPP4A, INPP4B, INPP5A, INPPL1, ITPKA, ITPKB, MIOX, OCRL, PIK3C2A, PIK3C2B, PIK3C2G, PIK3CA, PIK3CB, PIK3CG, PIK4CA, PIK4CA, LOC220686, PIP5K2B, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCG1, PLCG2 22 IMPA1(2), INPP1(2), INPP4A(2), INPP4B(5), INPP5A(2), INPPL1(3), ITPKB(4), MIOX(1), OCRL(5), PIK3C2A(2), PIK3C2B(3), PIK3C2G(7), PIK3CB(2), PIK3CG(12), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLCD1(6), PLCG1(4), PLCG2(9) 10086800 94 40 93 23 41 22 2 21 8 0 0.80 1.00 440 IL12PATHWAY IL12 and Stat4 Dependent Signaling Pathway in Th1 Development CCR5, CD3D, CD3E, CD3G, CD3Z, CXCR3, ETV5, IFNG, IL12A, IL12B, IL12RB1, IL12RB2, IL18, IL18R1, JAK2, JUN, MAP2K6, MAPK14, MAPK8, STAT4, TRA@, TRB@, TYK2 19 CCR5(1), CD3D(1), CD3G(2), ETV5(5), IFNG(1), IL12B(2), IL12RB1(2), IL12RB2(5), JAK2(6), MAP2K6(2), MAPK14(3), MAPK8(2), TYK2(1) 4040392 33 20 34 18 7 12 1 7 5 1 0.80 1.00 441 AMINOSUGARS_METABOLISM CMAS, CYB5R3, GCK, GFPT1, GNE, GNPDA1, GNPDA2, HEXA, HEXB, HK1, HK2, HK3, PGM3, RENBP, UAP1 15 CMAS(5), CYB5R3(1), GCK(1), GFPT1(3), GNE(2), GNPDA2(1), HEXB(1), HK1(6), HK2(3), HK3(4), PGM3(4), RENBP(1) 3969288 32 22 32 12 11 9 0 11 1 0 0.81 1.00 442 HSA00380_TRYPTOPHAN_METABOLISM Genes involved in tryptophan metabolism AADAT, AANAT, ABP1, ACAT1, ACAT2, ACMSD, AFMID, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AOC2, AOC3, AOX1, ASMT, CARM1, CAT, CYP1A1, CYP1A2, CYP1B1, DDC, ECHS1, EHHADH, GCDH, HAAO, HADH, HADHA, HEMK1, HSD17B10, HSD17B4, INDO, INDOL1, INMT, KMO, KYNU, LCMT1, LCMT2, LNX1, MAOA, MAOB, METTL2B, METTL6, NFX1, OGDH, OGDHL, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, TDO2, TPH1, TPH2, WARS, WARS2, WBSCR22 57 AADAT(1), ABP1(1), ACAT1(1), ACAT2(2), ACMSD(3), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), AOC2(4), AOC3(4), AOX1(5), CARM1(2), CAT(2), CYP1A1(6), CYP1A2(2), CYP1B1(2), DDC(1), ECHS1(2), EHHADH(2), GCDH(3), HAAO(2), HADH(1), HADHA(2), HSD17B10(1), HSD17B4(3), INMT(1), KMO(3), KYNU(6), LCMT1(1), LCMT2(2), LNX1(7), MAOA(2), METTL2B(1), METTL6(5), NFX1(5), OGDH(4), OGDHL(8), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), TDO2(2), TPH1(1), TPH2(5), WARS(1), WARS2(2), WBSCR22(1) 14010013 139 51 139 42 53 37 0 38 11 0 0.81 1.00 443 NUCLEOTIDE_METABOLISM ADSL, ADSS, DHFR, HPRT1, IMPDH1, MTHFD2, NME2, OAZ1, POLA, POLB, POLD1, POLG, PRPS2, RRM1, SAT, SRM 14 ADSL(7), ADSS(1), HPRT1(2), IMPDH1(1), POLB(1), POLD1(5), POLG(4), PRPS2(2), RRM1(1) 3004221 24 19 24 9 11 5 0 7 1 0 0.81 1.00 444 HSA00550_PEPTIDOGLYCAN_BIOSYNTHESIS Genes involved in peptidoglycan biosynthesis GLUL, PGLYRP2 2 GLUL(3) 427248 3 3 3 2 2 0 0 0 1 0 0.81 1.00 445 RANPATHWAY RanGEF (aka RCC1) and RanGFP regulate the GTP- or GDP-bound state of Ran, creating a Ran gradient across the nuclear membrane that is used in nuclear import. CHC1, RAN, RANBP1, RANBP2, RANGAP1 4 RANBP1(1), RANBP2(8), RANGAP1(1) 1937453 10 8 10 1 4 1 1 0 4 0 0.81 1.00 446 HSA04710_CIRCADIAN_RHYTHM Genes involved in circadian rhythm ARNTL, BHLHB2, BHLHB3, CLOCK, CRY1, CRY2, CSNK1D, CSNK1E, NPAS2, NR1D1, PER1, PER2, PER3 11 ARNTL(7), CLOCK(5), CRY1(2), CRY2(1), CSNK1D(3), NPAS2(5), NR1D1(4), PER1(1), PER2(2), PER3(7) 3993175 37 22 36 8 18 7 0 10 2 0 0.81 1.00 447 HSA00071_FATTY_ACID_METABOLISM Genes involved in fatty acid metabolism ACAA1, ACAA2, ACADL, ACADM, ACADS, ACADSB, ACADVL, ACAT1, ACAT2, ACOX1, ACOX3, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADH1A, ADH1B, ADH1C, ADH4, ADH5, ADH6, ADH7, ADHFE1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, CPT1A, CPT1B, CPT1C, CPT2, CYP4A11, CYP4A22, DCI, ECHS1, EHHADH, GCDH, HADH, HADHA, HADHB, HSD17B10, HSD17B4, PECI 47 ACAA1(2), ACADM(3), ACADSB(5), ACADVL(1), ACAT1(1), ACAT2(2), ACOX1(3), ACOX3(5), ACSL1(3), ACSL3(6), ACSL4(4), ACSL5(4), ACSL6(5), ADH1B(2), ADH1C(3), ADH4(1), ADH5(1), ADH6(5), ADH7(2), ADHFE1(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), CPT1A(5), CPT1B(5), CPT2(1), CYP4A11(2), CYP4A22(2), ECHS1(2), EHHADH(2), GCDH(3), HADH(1), HADHA(2), HADHB(1), HSD17B10(1), HSD17B4(3), PECI(1) 11410760 115 40 115 32 34 29 3 38 11 0 0.82 1.00 448 CTLPATHWAY Cytotoxic T lymphocytes induce apoptosis in infected cells presenting antigen-MHC-I complexes via the perforin and Fas/Fas ligand pathways. B2M, CD3D, CD3E, CD3G, CD3Z, GZMB, HLA-A, ICAM1, ITGAL, ITGB2, PRF1, TNFRSF6, TNFSF6, TRA@, TRB@ 10 B2M(3), CD3D(1), CD3G(2), GZMB(1), HLA-A(1), ICAM1(2), ITGAL(5), ITGB2(4) 1979624 19 14 19 5 5 5 0 3 6 0 0.82 1.00 449 HSA00630_GLYOXYLATE_AND_DICARBOXYLATE_METABOLISM Genes involved in glyoxylate and dicarboxylate metabolism ACO1, ACO2, AFMID, CS, GRHPR, HAO1, HAO2, HYI, LOC441996, MDH1, MDH2, MTHFD1, MTHFD1L, MTHFD2 13 ACO1(3), ACO2(2), HAO1(5), HAO2(3), HYI(1), MDH1(1), MDH2(1), MTHFD1(6), MTHFD1L(6) 3135365 28 17 27 8 11 5 0 10 2 0 0.82 1.00 450 CACAMPATHWAY Calcium functions as a second messenger activating the calcium/calmodulin-dependent kinases, which phosphorylate targets such as CREB. CALM1, CALM2, CALM3, CAMK1, CAMK1G, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, CAMKK1, CAMKK2, CREB1, SYT1 14 CAMK1(1), CAMK1G(3), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CAMK4(2), CAMKK1(1), CAMKK2(1), CREB1(1), SYT1(1) 2733144 17 13 17 12 6 5 2 3 1 0 0.82 1.00 451 MCALPAINPATHWAY In integrin-mediated cell migration, calpains digest links between the actin cytoskeleton and focal adhesion proteins. ACTA1, CAPN1, CAPN2, CAPNS1, CAPNS2, CXCR3, EGF, EGFR, HRAS, ITGA1, ITGB1, MAPK1, MAPK3, MYL2, MYLK, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PTK2, PXN, TLN1, VIL2 24 ACTA1(3), CAPN1(2), CAPN2(5), CAPNS1(1), CAPNS2(1), EGF(3), EGFR(10), ITGA1(3), ITGB1(6), MAPK1(2), MAPK3(2), MYL2(1), MYLK(11), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PTK2(5), TLN1(5) 7732589 67 34 67 18 28 18 2 15 4 0 0.82 1.00 452 OXIDATIVE_PHOSPHORYLATION ATP12A, ATP4B, ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ATP7A, ATP7B, COX10, COX4I1, COX5A, COX5B, COX6A1, COX6A2, COX6B1, COX6C, COX7A1, COX7A2, COX7B, COX7C, COX8A, NDUFA1, NDUFA10, NDUFA11, NDUFA4, NDUFA5, NDUFA8, NDUFB2, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFS1, NDUFS2, NDUFV1, NDUFV2, PP, PPA2, SDHA, SDHA, SDHAL2, SDHB, UQCRB, UQCRC1, UQCRFS1, UQCRH 60 ATP12A(13), ATP4B(1), ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), ATP7A(5), ATP7B(4), COX10(2), COX4I1(2), COX6A2(1), COX6C(1), COX7A1(1), NDUFA1(1), NDUFA10(2), NDUFA4(1), NDUFB2(1), NDUFB6(1), NDUFS1(4), NDUFV1(2), PPA2(1), SDHA(5), SDHB(2), SHMT1(1), UQCRB(2), UQCRC1(2), UQCRFS1(1), UQCRH(1) 8477507 85 35 84 22 34 28 1 16 6 0 0.83 1.00 453 PROSTAGLANDIN_AND_LEUKOTRIENE_METABOLISM AKR1C3, ALOX12, ALOX15, ALOX5, CBR1, CBR3, CYP4F2, CYP4F3, CYP4F3, CYP4F2, EPX, GGT1, LPO, LTA4H, MPO, PGDS, PLA2G1B, PLA2G2A, PLA2G2E, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PRDX1, PRDX2, PRDX5, PRDX6, PTGDS, PTGES2, PTGIS, PTGS1, PTGS2, TBXAS1, TPO 30 ALOX12(2), ALOX5(4), CYP4F2(8), CYP4F3(2), EPX(6), LPO(2), MPO(3), PLA2G1B(1), PLA2G4A(5), PLA2G6(2), PRDX6(2), PTGIS(4), PTGS1(4), PTGS2(2), TBXAS1(5), TPO(8) 6271769 60 32 59 20 30 10 0 16 4 0 0.83 1.00 454 CCR5PATHWAY CCR5 is a G-protein coupled receptor expressed in macrophages that recognizes chemokine ligands and is targeted by the HIV envelope protein GP120. CALM1, CALM2, CALM3, CCL2, CCL4, CCR5, CXCL12, CXCR4, FOS, GNAQ, JUN, MAPK14, MAPK8, PLCG1, PRKCA, PRKCB1, PTK2B, SYT1 17 CCR5(1), CXCL12(1), CXCR4(3), GNAQ(3), MAPK14(3), MAPK8(2), PLCG1(4), PRKCA(2), PTK2B(1), SYT1(1) 3105597 21 17 22 9 6 6 0 5 4 0 0.83 1.00 455 HSA00740_RIBOFLAVIN_METABOLISM Genes involved in riboflavin metabolism ACP1, ACP2, ACP5, ACP6, ACPP, ACPT, ENPP1, ENPP3, FLAD1, LHPP, MTMR1, MTMR2, MTMR6, PHPT1, RFK, TYR 16 ACP1(2), ACP2(2), ACP5(1), ACPP(3), ENPP1(4), ENPP3(3), FLAD1(1), LHPP(1), MTMR1(4), MTMR2(1), MTMR6(4), PHPT1(1), TYR(2) 3507574 29 18 28 13 10 7 1 8 3 0 0.83 1.00 456 HSA00620_PYRUVATE_METABOLISM Genes involved in pyruvate metabolism ACACA, ACACB, ACAT1, ACAT2, ACOT12, ACSS1, ACSS2, ACYP1, ACYP2, AKR1B1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, DLAT, DLD, GLO1, GRHPR, HAGH, HAGHL, LDHA, LDHAL6A, LDHAL6B, LDHB, LDHC, LDHD, MDH1, MDH2, ME1, ME2, ME3, PC, PCK1, PCK2, PDHA1, PDHA2, PDHB, PKLR, PKM2 42 ACACA(14), ACACB(14), ACAT1(1), ACAT2(2), ACOT12(6), ACSS1(3), ACSS2(5), ACYP1(1), AKR1B1(2), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), DLAT(2), LDHA(1), LDHAL6A(2), LDHAL6B(1), LDHB(1), LDHC(2), LDHD(1), MDH1(1), MDH2(1), ME1(7), ME2(3), ME3(4), PC(3), PCK2(3), PDHA1(4), PDHA2(6), PDHB(2), PKM2(2) 10877406 114 41 114 31 42 27 1 30 14 0 0.83 1.00 457 RNA_TRANSCRIPTION_REACTOME CCNH, CDK7, ERCC3, GTF2A2, GTF2B, GTF2E1, GTF2E2, GTF2F2, GTF2H1, GTF2H2, GTF2H4, ILK, MGC9850, MNAT1, POLR1A, POLR1B, POLR2A, POLR2B, POLR2C, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR3B, POLR3D, POLR3E, POLR3H, POLR3K, TAF12, TAF13, TAF5, TAF6, TAF7, TAF9, TBP, VARS2L 37 CCNH(2), CDK7(1), ERCC3(6), GTF2B(1), GTF2E1(5), GTF2H1(2), GTF2H4(1), MNAT1(1), POLR1A(7), POLR1B(6), POLR2A(6), POLR2B(5), POLR2E(1), POLR2H(1), POLR2I(1), POLR3B(6), POLR3D(3), POLR3E(3), POLR3H(1), TAF5(3), TAF6(2), TAF7(1), TBP(1) 8224362 66 33 66 22 23 23 1 14 5 0 0.83 1.00 458 FRUCTOSE_AND_MANNOSE_METABOLISM AKR1B1, ALDOA, ALDOB, ALDOC, FBP1, FBP2, FPGT, GCK, GMDS, GMPPA, GMPPB, HK1, HK2, HK3, KHK, MPI, PFKFB1, PFKFB3, PFKFB4, PFKM, PFKP, PMM1, PMM2, SORD, TPI1 25 AKR1B1(2), ALDOA(1), ALDOB(5), ALDOC(1), FBP2(2), FPGT(3), GCK(1), GMDS(1), GMPPA(6), HK1(6), HK2(3), HK3(4), KHK(1), MPI(1), PFKFB1(6), PFKFB4(2), PFKM(1), PFKP(2), PMM1(1), TPI1(1) 5643773 50 31 50 22 19 11 0 17 3 0 0.83 1.00 459 HSA04110_CELL_CYCLE Genes involved in cell cycle ABL1, ANAPC1, ANAPC10, ANAPC11, ANAPC2, ANAPC4, ANAPC5, ANAPC7, ATM, ATR, BUB1, BUB1B, BUB3, CCNA1, CCNA2, CCNB1, CCNB2, CCNB3, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNH, CDC14A, CDC14B, CDC16, CDC2, CDC20, CDC23, CDC25A, CDC25B, CDC25C, CDC26, CDC27, CDC45L, CDC6, CDC7, CDK2, CDK4, CDK6, CDK7, CDKN1A, CDKN1B, CDKN1C, CDKN2A, CDKN2B, CDKN2C, CDKN2D, CHEK1, CHEK2, CREBBP, CUL1, DBF4, E2F1, E2F2, E2F3, EP300, ESPL1, FZR1, GADD45A, GADD45B, GADD45G, GSK3B, hCG_1982709, HDAC1, HDAC2, LOC440917, LOC728919, MAD1L1, MAD2L1, MAD2L2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, PKMYT1, PLK1, PRKDC, PTTG1, PTTG2, RB1, RBL1, RBL2, RBX1, SFN, SKP1, SKP2, SMAD2, SMAD3, SMAD4, SMC1A, SMC1B, TFDP1, TGFB1, TGFB2, TGFB3, TP53, WEE1, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 105 ABL1(4), ANAPC1(3), ANAPC10(2), ANAPC2(1), ANAPC4(1), ANAPC5(2), ANAPC7(4), ATR(13), BUB1(4), BUB1B(3), BUB3(2), CCNA1(4), CCNA2(3), CCNB1(2), CCNB2(2), CCNB3(4), CCND2(1), CCND3(1), CCNE1(3), CCNE2(1), CCNH(2), CDC14A(1), CDC14B(3), CDC16(3), CDC20(3), CDC23(6), CDC25A(2), CDC25B(5), CDC25C(3), CDC27(9), CDC7(2), CDK2(2), CDK4(2), CDK6(1), CDK7(1), CDKN1A(1), CDKN1B(1), CDKN2A(1), CDKN2C(1), CHEK1(1), CHEK2(1), CREBBP(21), CUL1(7), DBF4(2), E2F2(1), E2F3(1), EP300(13), ESPL1(8), GSK3B(7), HDAC1(2), HDAC2(2), MAD1L1(1), MAD2L1(1), MAD2L2(1), MCM3(1), MCM4(4), MCM5(3), MCM6(3), MCM7(2), MDM2(4), ORC1L(1), ORC3L(1), ORC4L(1), ORC5L(1), PCNA(2), PKMYT1(1), PLK1(6), PRKDC(13), PTTG1(1), RB1(4), RBL1(3), RBL2(8), SKP1(1), SKP2(1), SMAD3(6), SMC1A(10), SMC1B(4), TFDP1(4), TGFB1(1), TGFB2(5), WEE1(3), YWHAB(2), YWHAE(3), YWHAQ(1) 29949072 278 68 275 70 84 65 8 79 41 1 0.83 1.00 460 BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_LACTOSERIES ABO, FUT1, FUT2, FUT3, FUT5, FUT6, SIAT6, ST3GAL3 7 ABO(2), FUT1(1), FUT2(1), FUT3(3), FUT6(1), ST3GAL3(4) 1134274 12 9 12 4 7 2 0 3 0 0 0.83 1.00 461 SA_MMP_CYTOKINE_CONNECTION Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. ACE, CD44, CSF1, FCGR3A, IL1B, IL6R, SELL, SPN, TGFB1, TGFB2, TNF, TNFRSF1A, TNFRSF1B, TNFRSF8, TNFSF8 15 ACE(2), CD44(3), CSF1(1), IL6R(2), SPN(1), TGFB1(1), TGFB2(5), TNFRSF1A(1), TNFRSF8(1), TNFSF8(1) 3207860 18 13 18 10 5 4 1 4 4 0 0.83 1.00 462 VOBESITYPATHWAY The adipose tissue of obese individuals overexpresses a key glucocorticoid-metabolizing enzyme, activating inactive circulating corticosteroids and inducing insulin resistance. APM1, HSD11B1, LPL, NR3C1, PPARG, RETN, RXRA, TNF 7 HSD11B1(1), LPL(6), NR3C1(3), PPARG(1), RXRA(1) 1309985 12 8 12 9 1 2 0 7 2 0 0.83 1.00 463 HSA00361_GAMMA_HEXACHLOROCYCLOHEXANE_DEGRADATION Genes involved in gamma-hexachlorocyclohexane degradation ACP1, ACP2, ACP5, ACP6, ACPP, ACPT, ALPI, ALPL, ALPP, ALPPL2, CMBL, CYP3A4, CYP3A43, CYP3A5, CYP3A7, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, PON1, PON2, PON3 22 ACP1(2), ACP2(2), ACP5(1), ACPP(3), ALPI(2), ALPL(1), ALPP(1), CYP3A4(1), CYP3A5(3), CYP3A7(4), DHRS1(1), DHRS2(2), DHRS3(2), PON1(5), PON2(1), PON3(2) 4061139 33 19 32 13 13 5 4 6 4 1 0.83 1.00 464 PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS AKR1B1, DCXR, GUSB, RPE, RPE, LOC440001, UCHL1, UCHL3, UGDH, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4 18 AKR1B1(2), GUSB(2), RPE(2), UCHL1(1), UCHL3(1), UGDH(3), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2B15(2), UGT2B4(2) 3787041 30 18 30 10 13 8 0 4 5 0 0.84 1.00 465 SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES Genes related to PIP3 signaling in cardiac myocytes AKT1, AKT2, AKT3, BAD, BCL2L1, CDC42, CDK2, CDKN1B, CDKN2A, CREB1, CREB3, CREB5, EBP, ERBB4, F2RL2, FOXO3A, FRAP1, GAB1, GADD45A, GRB2, GSK3A, GSK3B, IFI27, IGF1, IGFBP1, INPPL1, IRS1, IRS2, IRS4, MET, MYC, NOLC1, P101-PI3K, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PARD3, PARD6A, PDK1, PIK3CA, PIK3CD, PPP1R13B, PREX1, PSCD3, PTEN, PTK2, PTPN1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KB1, SFN, SHC1, SLC2A4, SOS1, SOS2, TSC1, TSC2, YWHAB, YWHAE, YWHAG, YWHAH, YWHAQ, YWHAZ 60 AKT1(2), AKT2(5), BAD(1), BCL2L1(1), CDK2(2), CDKN1B(1), CDKN2A(1), CREB1(1), CREB3(2), CREB5(2), EBP(2), F2RL2(2), GAB1(6), GRB2(2), GSK3A(2), GSK3B(7), IGF1(2), IGFBP1(2), INPPL1(3), IRS1(5), IRS4(11), MET(4), NOLC1(7), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PARD3(5), PIK3CD(2), PPP1R13B(5), PREX1(14), PTK2(5), PTPN1(4), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KB1(3), SHC1(3), SLC2A4(3), SOS1(5), SOS2(9), TSC1(3), TSC2(1), YWHAB(2), YWHAE(3), YWHAQ(1) 16466049 167 52 164 63 58 36 5 47 21 0 0.84 1.00 466 HSA00960_ALKALOID_BIOSYNTHESIS_II Genes involved in alkaloid biosynthesis II AADAC, ABP1, AOC2, AOC3, ARD1A, CES1, CES7, DDHD1, ESCO1, ESCO2, LIPA, LYCAT, MYST3, MYST4, NAT5, NAT6, PLA1A, PNPLA3, PPME1, PRDX6, SH3GLB1 18 AADAC(2), ABP1(1), AOC2(4), AOC3(4), CES1(4), DDHD1(1), ESCO1(7), ESCO2(3), LIPA(1), MYST3(13), MYST4(5), PLA1A(3), PNPLA3(4), PPME1(2), PRDX6(2), SH3GLB1(3) 5911620 59 27 59 18 26 17 1 10 5 0 0.84 1.00 467 SELENOAMINO_ACID_METABOLISM AHCY, CBS, CTH, GGT1, MARS, MARS2, MAT1A, MAT2B, PAPSS1, PAPSS2, SCLY, SEPHS1 11 AHCY(3), CBS(2), CTH(1), MARS(3), MAT1A(5), MAT2B(2), PAPSS1(1), PAPSS2(2), SCLY(1), SEPHS1(1) 2640739 21 14 21 8 11 4 1 4 1 0 0.84 1.00 468 HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON Genes involved in regulation of actin cytoskeleton ABI2, ACTN1, ACTN2, ACTN3, ACTN4, APC, APC2, ARAF, ARHGEF1, ARHGEF12, ARHGEF4, ARHGEF6, ARHGEF7, ARPC1A, ARPC1B, ARPC2, ARPC3, ARPC4, ARPC5, ARPC5L, BAIAP2, BCAR1, BDKRB1, BDKRB2, BRAF, C3orf10, CD14, CDC42, CFL1, CFL2, CHRM1, CHRM2, CHRM3, CHRM4, CHRM5, CRK, CRKL, CSK, CYFIP1, CYFIP2, DIAPH1, DIAPH2, DIAPH3, DOCK1, EGF, EGFR, EZR, F2, F2R, FGD1, FGD3, FGF1, FGF10, FGF11, FGF12, FGF13, FGF14, FGF16, FGF17, FGF18, FGF19, FGF2, FGF20, FGF21, FGF22, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FN1, GIT1, GNA12, GNA13, GNG12, GRLF1, GSN, HRAS, INS, IQGAP1, IQGAP2, IQGAP3, ITGA1, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAD, ITGAE, ITGAL, ITGAM, ITGAV, ITGAX, ITGB1, ITGB2, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, KRAS, LIMK1, LIMK2, LOC200025, LOC645126, LOC653888, MAP2K1, MAP2K2, MAPK1, MAPK3, MLCK, MOS, MRAS, MRCL3, MRLC2, MSN, MYH10, MYH14, MYH9, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLK, MYLK2, MYLPF, NCKAP1, NCKAP1L, NRAS, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PDGFA, PDGFB, PDGFRA, PDGFRB, PFN1, PFN2, PFN3, PFN4, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PPP1CA, PPP1CB, PPP1CC, PPP1R12A, PPP1R12B, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, RDX, RHOA, ROCK1, ROCK2, RRAS, RRAS2, SCIN, SLC9A1, SOS1, SOS2, SSH1, SSH2, SSH3, TIAM1, TIAM2, TMSB4X, TMSB4Y, TMSL3, VAV1, VAV2, VAV3, VCL, WAS, WASF1, WASF2, WASL 197 ACTN1(3), ACTN2(7), ACTN3(2), ACTN4(2), APC2(1), ARAF(3), ARHGEF1(4), ARHGEF12(7), ARHGEF4(3), ARHGEF6(7), ARHGEF7(8), ARPC1A(5), ARPC1B(2), ARPC2(1), ARPC5(1), ARPC5L(1), BDKRB2(2), CD14(1), CFL1(1), CHRM1(3), CHRM2(8), CHRM3(4), CHRM5(1), CRKL(2), CSK(1), CYFIP1(5), CYFIP2(4), DIAPH1(1), DIAPH2(9), DIAPH3(3), DOCK1(5), EGF(3), EGFR(10), EZR(2), F2(2), FGD1(6), FGD3(1), FGF1(2), FGF11(2), FGF12(2), FGF13(2), FGF14(5), FGF17(1), FGF20(1), FGF21(1), FGF23(1), FGF3(1), FGF5(2), FGF6(3), FGF7(1), FGF8(1), FGF9(1), FGFR1(3), FGFR2(1), FGFR3(2), FGFR4(2), FN1(17), GIT1(2), GNA12(2), GNA13(2), GRLF1(7), IQGAP1(10), IQGAP2(9), IQGAP3(11), ITGA1(3), ITGA10(3), ITGA11(2), ITGA2(5), ITGA2B(2), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGA7(6), ITGA8(5), ITGA9(4), ITGAD(7), ITGAE(5), ITGAL(5), ITGAM(5), ITGAV(1), ITGAX(4), ITGB1(6), ITGB2(4), ITGB3(7), ITGB4(2), ITGB5(5), ITGB6(6), ITGB7(4), ITGB8(4), LIMK1(4), LIMK2(4), MAP2K1(3), MAPK1(2), MAPK3(2), MOS(2), MRAS(1), MSN(3), MYH10(8), MYH14(9), MYH9(9), MYL2(1), MYL7(1), MYLK(11), MYLK2(2), NCKAP1(8), NCKAP1L(7), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PDGFA(1), PDGFRA(13), PDGFRB(5), PFN2(1), PFN4(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PIP4K2A(2), PIP4K2B(2), PIP4K2C(3), PIP5K1A(3), PIP5K1B(1), PIP5K1C(3), PPP1CB(1), PPP1CC(1), PPP1R12A(2), PPP1R12B(5), PTK2(5), RAF1(4), RDX(2), ROCK1(8), ROCK2(2), RRAS2(1), SCIN(2), SLC9A1(2), SOS1(5), SOS2(9), SSH1(4), SSH2(4), TIAM1(12), TIAM2(14), TMSL3(1), VAV1(11), VAV2(2), VAV3(10), VCL(1), WAS(1), WASF1(1), WASF2(2), WASL(5) 63110188 603 104 596 203 247 118 20 159 57 2 0.84 1.00 469 HSA00760_NICOTINATE_AND_NICOTINAMIDE_METABOLISM Genes involved in nicotinate and nicotinamide metabolism AOX1, BST1, C9orf95, CD38, ENPP1, ENPP3, NADK, NADSYN1, NMNAT1, NMNAT2, NMNAT3, NNMT, NNT, NP, NT5C, NT5C1A, NT5C1B, NT5C2, NT5C3, NT5E, NT5M, NUDT12, PBEF1, QPRT 22 AOX1(5), C9orf95(1), CD38(1), ENPP1(4), ENPP3(3), NADK(1), NADSYN1(2), NMNAT1(1), NMNAT2(1), NMNAT3(2), NNMT(1), NNT(1), NT5C1A(1), NT5C1B(9), NT5C2(3), NT5C3(2), NT5E(2), NT5M(1), NUDT12(2), QPRT(1) 5063197 44 26 44 17 15 15 0 9 5 0 0.84 1.00 470 HSA00860_PORPHYRIN_AND_CHLOROPHYLL_METABOLISM Genes involved in porphyrin and chlorophyll metabolism ALAD, ALAS1, ALAS2, BLVRA, BLVRB, COX10, COX15, CP, CPOX, EARS2, EPRS, FECH, FTH1, FTMT, GUSB, HCCS, HMBS, HMOX1, HMOX2, MMAB, PPOX, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, UROD, UROS 41 ALAS1(5), ALAS2(5), BLVRA(2), BLVRB(1), COX10(2), COX15(1), CP(3), EPRS(10), FECH(2), FTMT(3), GUSB(2), HCCS(1), HMBS(2), HMOX1(2), HMOX2(1), MMAB(1), PPOX(3), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2A1(8), UGT2A3(5), UGT2B10(1), UGT2B11(4), UGT2B15(2), UGT2B17(4), UGT2B28(2), UGT2B4(2), UGT2B7(4), UROS(1) 9354384 94 34 92 21 25 26 1 32 10 0 0.85 1.00 471 FATTY_ACID_BIOSYNTHESIS_PATH_2 ACAA1, ACAA2, ACAT1, ACAT2, ECHS1, EHHADH, HADHA, HADHB, SDS 9 ACAA1(2), ACAT1(1), ACAT2(2), ECHS1(2), EHHADH(2), HADHA(2), HADHB(1), SDS(2) 1958178 14 10 14 2 3 5 0 3 3 0 0.85 1.00 472 HSA00770_PANTOTHENATE_AND_COA_BIOSYNTHESIS Genes involved in pantothenate and CoA biosynthesis BCAT1, BCAT2, COASY, DPYD, DPYS, ENPP1, ENPP3, ILVBL, PANK1, PANK2, PANK3, PANK4, PPCDC, PPCS, UPB1, VNN1 16 BCAT1(1), BCAT2(1), DPYD(8), DPYS(6), ENPP1(4), ENPP3(3), ILVBL(2), PANK1(2), PANK3(2), PANK4(1), PPCS(1), UPB1(3), VNN1(5) 4024060 39 21 39 11 10 14 2 10 3 0 0.85 1.00 473 RIBOFLAVIN_METABOLISM ACP1, ACP2, ACP5, ACPP, ACPT, ENPP1, ENPP3, FLAD1, RFK, TYR 10 ACP1(2), ACP2(2), ACP5(1), ACPP(3), ENPP1(4), ENPP3(3), FLAD1(1), TYR(2) 2265990 18 12 17 7 7 5 1 4 1 0 0.85 1.00 474 HSP27PATHWAY Hsp27 oligomers have molecular chaperone activity and protect heat-stressed cells against apoptosis. ACTA1, APAF1, BCL2, CASP3, CASP9, CYCS, DAXX, FAS, FASLG, HSPB1, HSPB2, IL1A, MAPKAPK2, MAPKAPK3, TNF, TNFRSF6 15 ACTA1(3), APAF1(7), BCL2(1), CASP3(1), CASP9(2), FASLG(1), HSPB2(1), IL1A(1), MAPKAPK2(3), MAPKAPK3(1) 2610308 21 15 21 10 6 6 0 6 3 0 0.86 1.00 475 ST_IL_13_PATHWAY Like IL-4, IL-13 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. IL13, IL13RA1, IL13RA2, IL4R, JAK1, JAK2, TYK2 7 IL13(1), IL13RA1(1), IL13RA2(2), IL4R(1), JAK1(3), JAK2(6), TYK2(1) 2439254 15 13 14 6 7 0 2 4 1 1 0.86 1.00 476 ST_INTERLEUKIN_13_PATHWAY IL-13 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. IL13, IL13RA1, IL13RA2, IL4R, JAK1, JAK2, TYK2 7 IL13(1), IL13RA1(1), IL13RA2(2), IL4R(1), JAK1(3), JAK2(6), TYK2(1) 2439254 15 13 14 6 7 0 2 4 1 1 0.86 1.00 477 CHEMICALPATHWAY DNA damage promotes Bid cleavage, which stimulates mitochondrial cytochrome c release and consequent caspase activation, resulting in apoptosis. ADPRT, AKT1, APAF1, ATM, BAD, BAX, BCL2, BCL2L1, BID, CASP3, CASP6, CASP7, CASP9, CYCS, EIF2S1, PRKCA, PRKCB1, PTK2, PXN, STAT1, TLN1, TP53 18 AKT1(2), APAF1(7), BAD(1), BAX(1), BCL2(1), BCL2L1(1), BID(1), CASP3(1), CASP6(1), CASP7(1), CASP9(2), PRKCA(2), PTK2(5), STAT1(6), TLN1(5) 4808546 37 24 37 14 14 7 2 11 3 0 0.86 1.00 478 GALACTOSE_METABOLISM AKR1B1, B4GALT1, B4GALT2, FBP2, G6PC, GAA, GALE, GALK1, GALK2, GALT, GANAB, GCK, GLA, GLB1, HK1, HK2, HK3, LALBA, LCT, MGAM, PFKM, PFKP, PGM1, PGM3 24 AKR1B1(2), B4GALT1(5), B4GALT2(3), FBP2(2), G6PC(3), GALE(1), GALK2(2), GALT(2), GANAB(4), GCK(1), GLA(4), GLB1(3), HK1(6), HK2(3), HK3(4), LCT(15), MGAM(9), PFKM(1), PFKP(2), PGM1(2), PGM3(4) 7642150 78 35 78 28 34 22 1 19 2 0 0.86 1.00 479 HSA04620_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY Genes involved in Toll-like receptor signaling pathway AKT1, AKT2, AKT3, CASP8, CCL3, CCL4, CCL5, CD14, CD40, CD80, CD86, CHUK, CXCL10, CXCL11, CXCL9, FADD, FOS, IFNA1, IFNA10, IFNA13, IFNA14, IFNA16, IFNA17, IFNA2, IFNA21, IFNA4, IFNA5, IFNA6, IFNA7, IFNA8, IFNAR1, IFNAR2, IFNB1, IKBKB, IKBKE, IKBKG, IL12A, IL12B, IL1B, IL6, IL8, IRAK1, IRAK4, IRF3, IRF5, IRF7, JUN, LBP, LY96, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K6, MAP2K7, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K8, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK8, MAPK9, MYD88, NFKB1, NFKB2, NFKBIA, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, RAC1, RELA, RIPK1, SPP1, STAT1, TBK1, TICAM1, TICAM2, TIRAP, TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TNF, TOLLIP, TRAF3, TRAF6 96 AKT1(2), AKT2(5), CD14(1), CHUK(4), CXCL11(2), CXCL9(2), IFNA1(1), IFNA10(1), IFNA13(2), IFNA16(4), IFNA2(3), IFNA21(1), IFNA4(2), IFNA5(1), IFNA6(3), IFNA7(1), IFNA8(1), IFNAR1(3), IFNAR2(1), IFNB1(1), IKBKB(2), IKBKE(3), IL12B(2), IL6(1), IRAK1(1), IRAK4(2), IRF5(3), LBP(1), LY96(2), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAP3K7(2), MAP3K8(2), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK8(2), MAPK9(3), MYD88(1), NFKB1(3), NFKB2(2), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), RELA(2), RIPK1(2), SPP1(1), STAT1(6), TBK1(5), TICAM1(1), TIRAP(1), TLR1(2), TLR2(2), TLR3(4), TLR4(7), TLR5(3), TLR6(2), TLR7(4), TLR8(3), TLR9(4), TOLLIP(1), TRAF3(4), TRAF6(4) 19942988 174 53 174 57 46 39 9 59 21 0 0.86 1.00 480 APOPTOSIS APAF1, BAD, BAK1, BCL2L7P1, BAX, BCL2, BCL2L1, BCL2L11, BID, BIRC2, BIRC3, BIRC4, BIRC5, BNIP3L, CASP1, CASP10, CASP1, COPl, CASP2, CASP3, CASP4, CASP6, CASP7, CASP8, CASP9, CHUK, CYCS, DFFA, DFFB, FADD, FAS, FASLG, GZMB, HELLS, HRK, IKBKB, IKBKG, IRF1, IRF2, IRF3, IRF4, IRF5, IRF6, IRF7, JUN, LTA, MAP2K4, MAP3K1, MAPK10, MDM2, MYC, NFKB1, NFKBIA, NFKBIB, NFKBIE, PRF1, RELA, RIPK1, TNF, TNFRSF10B, TNFRSF1A, TNFRSF1B, TNFRSF21, TNFRSF25, TNFRSF25, PLEKHG5, TNFSF10, TP53, TP73, TRADD, TRAF1, TRAF2, TRAF3 63 APAF1(7), BAD(1), BAK1(1), BAX(1), BCL2(1), BCL2L1(1), BCL2L11(2), BID(1), BIRC2(2), BIRC3(2), BNIP3L(3), CASP1(2), CASP10(2), CASP2(4), CASP3(1), CASP4(1), CASP6(1), CASP7(1), CASP9(2), CHUK(4), DFFA(2), DFFB(2), FASLG(1), GZMB(1), HELLS(4), IKBKB(2), IRF1(1), IRF2(3), IRF4(1), IRF5(3), IRF6(2), MAP3K1(6), MAPK10(4), MDM2(4), NFKB1(3), NFKBIB(1), NFKBIE(2), RELA(2), RIPK1(2), TNFRSF10B(2), TNFRSF1A(1), TNFRSF21(4), TNFSF10(1), TRADD(1), TRAF1(1), TRAF2(1), TRAF3(4) 12679514 101 44 101 36 32 25 2 31 11 0 0.86 1.00 481 ST_INTERLEUKIN_4_PATHWAY Like IL-13, IL-4 is produced by Th2 cells on activation of the T cell antigen receptor, and by mast and basophil cells on activation of the IgE receptor. AKT1, AKT2, AKT3, CISH, GRB2, IARS, IL13RA1, IL2RG, IL4, IL4R, INPP5D, JAK1, JAK2, JAK3, NR0B2, PI3, PIK3CA, PPP1R13B, RPS6KB1, SERPINA4, SHC1, SOS1, SOS2, SRC, STAT6, TYK2 25 AKT1(2), AKT2(5), GRB2(2), IARS(5), IL13RA1(1), IL4(3), IL4R(1), INPP5D(2), JAK1(3), JAK2(6), JAK3(6), PPP1R13B(5), RPS6KB1(3), SERPINA4(2), SHC1(3), SOS1(5), SOS2(9), SRC(3), STAT6(2), TYK2(1) 8157591 69 33 67 29 21 12 4 21 10 1 0.86 1.00 482 HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS Genes involved in ubiquitin mediated proteolysis ANAPC1, ANAPC10, ANAPC11, ANAPC2, ANAPC4, ANAPC5, ANAPC7, BTRC, CDC16, CDC20, CDC23, CDC26, CDC27, CUL1, CUL2, CUL3, FBXW11, FBXW7, FZR1, ITCH, LOC728919, RBX1, SKP1, SKP2, SMURF1, SMURF2, TCEB1, TCEB2, UBA1, UBE2C, UBE2D1, UBE2D2, UBE2D3, UBE2D4, UBE2E1, UBE2E2, UBE2E3, VHL, WWP1, WWP2 38 ANAPC1(3), ANAPC10(2), ANAPC2(1), ANAPC4(1), ANAPC5(2), ANAPC7(4), BTRC(2), CDC16(3), CDC20(3), CDC23(6), CDC27(9), CUL1(7), CUL2(4), CUL3(1), FBXW11(7), ITCH(3), SKP1(1), SKP2(1), SMURF1(1), SMURF2(2), UBA1(1), UBE2C(2), UBE2D1(1), UBE2D4(1), UBE2E1(3), WWP1(5), WWP2(4) 9079179 80 37 76 28 23 14 2 28 13 0 0.87 1.00 483 PANTOTHENATE_AND_COA_BIOSYNTHESIS BCAT1, COASY, DPYD, DPYS, ENPP1, ENPP3, PANK1, PANK2, PANK3, PANK4, PPCS, UPB1 12 BCAT1(1), DPYD(8), DPYS(6), ENPP1(4), ENPP3(3), PANK1(2), PANK3(2), PANK4(1), PPCS(1), UPB1(3) 3218436 31 17 31 7 6 12 1 9 3 0 0.87 1.00 484 STAT3PATHWAY The STAT transcription factors are phosphorylated and activated by JAK kinases in response to cytokine signaling. FRAP1, JAK1, JAK2, JAK3, MAPK1, MAPK3, STAT3, TYK2 7 JAK1(3), JAK2(6), JAK3(6), MAPK1(2), MAPK3(2), STAT3(2), TYK2(1) 2786768 22 15 21 9 9 4 1 5 2 1 0.87 1.00 485 HSA00900_TERPENOID_BIOSYNTHESIS Genes involved in terpenoid biosynthesis FDFT1, FDPS, GGPS1, IDI1, IDI2, SQLE 6 FDFT1(2), IDI1(1), IDI2(1), SQLE(1) 1027615 5 5 5 4 1 2 0 0 2 0 0.87 1.00 486 HSA00450_SELENOAMINO_ACID_METABOLISM Genes involved in selenoamino acid metabolism AHCY, CARM1, CBS, CTH, GGT1, GGTL3, GGTL4, HEMK1, KIAA0828, LCMT1, LCMT2, MARS, MARS2, MAT1A, MAT2B, METTL2B, METTL6, PAPSS1, PAPSS2, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, SCLY, SEPHS1, SEPHS2, WBSCR22 25 AHCY(3), CARM1(2), CBS(2), CTH(1), LCMT1(1), LCMT2(2), MARS(3), MAT1A(5), MAT2B(2), METTL2B(1), METTL6(5), PAPSS1(1), PAPSS2(2), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), SCLY(1), SEPHS1(1), SEPHS2(3), WBSCR22(1) 5554820 46 26 46 17 18 11 1 13 3 0 0.87 1.00 487 ATP_SYNTHESIS ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 21 ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), SHMT1(1) 3544551 29 19 28 8 11 11 1 3 3 0 0.87 1.00 488 FLAGELLAR_ASSEMBLY ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 21 ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), SHMT1(1) 3544551 29 19 28 8 11 11 1 3 3 0 0.87 1.00 489 TYPE_III_SECRETION_SYSTEM ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H 21 ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), SHMT1(1) 3544551 29 19 28 8 11 11 1 3 3 0 0.87 1.00 490 KREBS_TCA_CYCLE ACO2, CGI_48, CS, DLAT, DLD, DLST, DLST, DLSTP, FH, IDH2, IDH3A, IDH3B, IDH3G, KIAA1348, MDH1, MDH2, OGDH, PC, PDHA1, PDHA2, PDHB, PDHX, PDK1, PDK2, PDK3, PDK4, PDP2, PPM2C, SDHA, SDHA, SDHAL2, SDHB, SDHC, SDHD, SUCLA2, SUCLG1, SUCLG2, WDR50 30 ACO2(2), DLAT(2), FH(1), IDH2(7), IDH3A(1), IDH3G(2), MDH1(1), MDH2(1), OGDH(4), PC(3), PDHA1(4), PDHA2(6), PDHB(2), PDHX(2), PDK2(1), PDK4(2), SDHA(5), SDHB(2), SDHD(1), SUCLA2(3), SUCLG1(1) 6671285 53 29 53 17 25 11 0 8 9 0 0.87 1.00 491 FXRPATHWAY The nuclear receptor transcription factors FXR and LXR are activated by cholesterol metabolites and regulate cholesterol homeostasis. FABP6, LDLR, NR0B2, NR1H3, NR1H4, RXRA 6 FABP6(1), LDLR(4), NR1H3(4), NR1H4(1), RXRA(1) 1254356 11 9 11 7 4 6 0 1 0 0 0.87 1.00 492 IONPATHWAY Activated phospholipase C hydrolyzes the lipid PIP3 into second messengers DAG, which activates protein kinase C, and IP3, which induces calcium influx into the cytoplasm. P2RY2, PLCG1, PRKCA, PRKCB1, PTK2B 4 P2RY2(2), PLCG1(4), PRKCA(2), PTK2B(1) 1571796 9 8 9 3 4 1 1 2 1 0 0.87 1.00 493 HSA03030_DNA_POLYMERASE Genes involved in DNA polymerase POLA1, POLA2, POLB, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, POLE3, POLE4, POLG, POLG2, POLH, POLI, POLK, POLL, POLM, POLQ, POLS, PRIM1, PRIM2, REV1, REV3L, RFC5 24 POLA1(5), POLA2(2), POLB(1), POLD1(5), POLD2(1), POLD3(2), POLE(17), POLE3(1), POLG(4), POLG2(1), POLH(4), POLI(7), POLK(2), POLM(1), POLQ(8), PRIM2(6), REV1(4), REV3L(15), RFC5(2) 9765953 88 34 86 25 23 24 0 30 10 1 0.88 1.00 494 UBIQUINONE_BIOSYNTHESIS NDUFA1, NDUFA10, NDUFA11, NDUFA4, NDUFA5, NDUFA8, NDUFB2, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFS1, NDUFS2, NDUFV1, NDUFV2 15 NDUFA1(1), NDUFA10(2), NDUFA4(1), NDUFB2(1), NDUFB6(1), NDUFS1(4), NDUFV1(2) 1613619 12 10 12 4 4 3 0 4 1 0 0.88 1.00 495 PORPHYRIN_AND_CHLOROPHYLL_METABOLISM ALAD, BLVRA, BLVRB, CP, CPOX, EPRS, FECH, GUSB, HCCS, HMBS, HMOX1, HMOX2, PPOX, UGT1A10, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6, UGT1A8, UGT1A9, UGT2B15, UGT2B4, UROD, UROS 26 BLVRA(2), BLVRB(1), CP(3), EPRS(10), FECH(2), GUSB(2), HCCS(1), HMBS(2), HMOX1(2), HMOX2(1), PPOX(3), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2B15(2), UGT2B4(2), UROS(1) 6070952 49 26 48 16 17 12 0 15 5 0 0.88 1.00 496 MONOCYTEPATHWAY Monocytes are a class of immune phagocytes that can develop into macrophages and express LFA-1, CD44, and other surface signaling proteins. CD44, ICAM1, ITGA4, ITGAL, ITGAM, ITGB1, ITGB2, PECAM1, SELE, SELL, SELP 11 CD44(3), ICAM1(2), ITGA4(3), ITGAL(5), ITGAM(5), ITGB1(6), ITGB2(4), PECAM1(1), SELE(2), SELP(4) 4002308 35 19 34 10 12 10 0 10 3 0 0.88 1.00 497 N_GLYCAN_DEGRADATION AGA, FLJ21865, FUCA1, FUCA2, GLB1, HEXA, HEXB, LCT, MAN2C1, MANBA, NEU1, NEU2, NEU3, NEU4 13 AGA(3), FUCA1(1), GLB1(3), HEXB(1), LCT(15), MAN2C1(6), MANBA(6), NEU2(1), NEU3(1) 3836437 37 22 37 12 15 12 1 8 1 0 0.88 1.00 498 SULFUR_METABOLISM BPNT1, PAPSS1, PAPSS2, SULT1A2, SULT1A3, SULT1A3, SULT1A4, SULT1E1, SULT2A1, SUOX 7 BPNT1(1), PAPSS1(1), PAPSS2(2), SULT1A2(1), SULT1E1(1), SULT2A1(1), SUOX(2) 1413218 9 7 9 1 5 0 0 1 3 0 0.88 1.00 499 GATA3PATHWAY GATA-3 is a transcription factor that promotes differentiation of helper T cells into Th2 cells, which secrete cytokines IL4, IL5, and IL13. GATA3, IL13, IL4, IL5, JUNB, MAF, MAP2K3, MAPK14, NFATC1, NFATC2, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B 16 GATA3(4), IL13(1), IL4(3), MAF(1), MAP2K3(2), MAPK14(3), NFATC1(1), NFATC2(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2) 2692264 25 18 25 7 15 2 2 4 2 0 0.88 1.00 500 SIG_REGULATION_OF_THE_ACTIN_CYTOSKELETON_BY_RHO_GTPASES Genes related to regulation of the actin cytoskeleton ACTG1, ACTG2, ACTR2, ACTR3, AKT1, ANGPTL2, CDC42, CFL1, CFL2, FLNA, FLNC, FSCN1, FSCN2, FSCN3, GDI1, GDI2, LIMK1, MYH2, MYLK, MYLK2, PAK1, PAK2, PAK3, PAK4, PAK6, PAK7, PFN1, PFN2, RHO, ROCK1, ROCK2, RPS4X, VASP, WASF1, WASL 35 ACTG2(3), ACTR2(1), ACTR3(2), AKT1(2), ANGPTL2(8), CFL1(1), FLNA(2), FLNC(11), FSCN3(2), GDI1(1), GDI2(1), LIMK1(4), MYH2(9), MYLK(11), MYLK2(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PAK7(4), PFN2(1), RHO(2), ROCK1(8), ROCK2(2), RPS4X(1), VASP(3), WASF1(1), WASL(5) 11101189 97 40 97 31 28 25 4 28 12 0 0.89 1.00 501 PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM ACVR1, ACVR1B, ACVRL1, AKT1, AURKB, BMPR1A, BMPR2, BUB1, CDC2L5, CDIPT, CDKL1, CDKL2, CDS1, CDS2, CLK1, CLK2, CLK4, COL4A3BP, CSNK2A1, CSNK2A1, CSNK2A1P, CSNK2A2, CSNK2B, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, IMPA1, INPP1, INPP4A, INPP4B, INPP5A, INPPL1, ITPKA, ITPKB, MAP3K10, MOS, NEK1, NEK3, OCRL, PAK4, PCTK1, PCTK2, PIK3C2A, PIK3C2B, PIK3C2G, PIK3CA, PIK3CB, PIK3CG, PIK4CA, PIK4CA, LOC220686, PIM2, PIP5K2B, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCG1, PLCG2, PLK3, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCQ, PRKCZ, PRKD1, PRKG1, RAF1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KB1, STK11, TGFBR1, VRK1 80 ACVR1(3), ACVRL1(3), AKT1(2), AURKB(1), BMPR1A(4), BMPR2(7), BUB1(4), CDKL1(2), CDKL2(4), CDS1(1), CDS2(4), CLK1(5), CLK4(2), COL4A3BP(3), CSNK2A1(4), CSNK2A2(2), CSNK2B(2), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKZ(2), IMPA1(2), INPP1(2), INPP4A(2), INPP4B(5), INPP5A(2), INPPL1(3), ITPKB(4), MAP3K10(2), MOS(2), NEK1(7), NEK3(4), OCRL(5), PIK3C2A(2), PIK3C2B(3), PIK3C2G(7), PIK3CB(2), PIK3CG(12), PIM2(1), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLCD1(6), PLCG1(4), PLCG2(9), PLK3(2), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCQ(4), PRKD1(10), PRKG1(4), RAF1(4), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KB1(3), TGFBR1(6), VRK1(3) 26035872 264 68 260 75 110 58 6 68 22 0 0.89 1.00 502 SA_CASPASE_CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. ADPRT, APAF1, BIRC2, BIRC3, BIRC4, CASP10, CASP3, CASP7, CASP8, CASP9, DFFA, DFFB, GZMB, PRF1, SCAP, SREBF1, SREBF2, TNFRSF6, TNFSF6 14 APAF1(7), BIRC2(2), BIRC3(2), CASP10(2), CASP3(1), CASP7(1), CASP9(2), DFFA(2), DFFB(2), GZMB(1), SCAP(1), SREBF1(1), SREBF2(2) 3972174 26 19 26 14 5 6 1 10 4 0 0.89 1.00 503 EICOSANOID_SYNTHESIS ALOX12, ALOX15, ALOX15B, ALOX5, ALOX5AP, DPEP1, GGT1, IPLA2(GAMMA), LTA4H, LTC4S, PLA2G2A, PLA2G6, PTGDS, PTGES, PTGIS, PTGS1, PTGS2, TBXAS1 16 ALOX12(2), ALOX15B(5), ALOX5(4), ALOX5AP(1), DPEP1(1), PLA2G6(2), PTGIS(4), PTGS1(4), PTGS2(2), TBXAS1(5) 3283968 30 19 30 8 11 6 0 12 1 0 0.89 1.00 504 ST_FAS_SIGNALING_PATHWAY The Fas receptor induces apoptosis and NF-kB activation when bound to Fas ligand. ADPRT, ALG2, BAK1, BAX, BFAR, BIRC4, BTK, CAD, CASP10, CASP3, CASP8, CASP8AP2, CD7, CDK2AP1, CSNK1A1, DAXX, DEDD, DEDD2, DFFA, DIABLO, EGFR, EPHB2, FADD, FAF1, FAIM2, FREQ, HRB, HSPB1, IL1A, IL8, MAP2K4, MAP2K7, MAP3K1, MAP3K5, MAPK1, MAPK10, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MCP, MET, NFAT5, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, NR0B2, PFN1, PFN2, PTPN13, RALBP1, RIPK1, ROCK1, SMPD1, TNFRSF6, TNFRSF6B, TP53, TPX2, TRAF2, TUFM, VIL2 56 ALG2(3), BAK1(1), BAX(1), BFAR(1), BTK(6), CAD(10), CASP10(2), CASP3(1), CASP8AP2(12), CD7(1), CSNK1A1(2), DFFA(2), DIABLO(1), EGFR(10), EPHB2(7), FAF1(4), FAIM2(3), IL1A(1), MAP3K1(6), MAP3K5(5), MAPK1(2), MAPK10(4), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3), MET(4), NFAT5(5), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PFN2(1), PTPN13(8), RALBP1(4), RIPK1(2), ROCK1(8), SMPD1(6), TPX2(7), TRAF2(1), TUFM(1) 16572687 148 49 146 42 51 29 0 53 14 1 0.89 1.00 505 S1PPATHWAY At low cholesterol concentrations, sterol-regulatory element binding proteins (SREBPs) act as transcription factors to promote cholesterol uptake and biosynthesis. EPLIN, HMGCS1, LDLR, MBTPS1, MBTPS2, SCAP, SREBF1, SREBF2 7 HMGCS1(1), LDLR(4), MBTPS1(5), SCAP(1), SREBF1(1), SREBF2(2) 2774424 14 13 14 10 4 6 1 0 3 0 0.89 1.00 506 ST_GAQ_PATHWAY G-alpha-q activates phospholipase C, resulting in calcium influx and increasing protein kinase C activity. ADRBK1, AKT1, AKT2, AKT3, BF, DAG1, GNAQ, IKBKG, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PDK1, PHKA2, PIK3CB, PITX2, PLD1, PLD2, PLD3, VN1R1 26 AKT1(2), AKT2(5), DAG1(4), GNAQ(3), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PHKA2(5), PIK3CB(2), PITX2(2), PLD1(8), PLD2(1), PLD3(5), VN1R1(4) 10497672 87 39 87 36 36 19 5 20 7 0 0.89 1.00 507 HSA04370_VEGF_SIGNALING_PATHWAY Genes involved in VEGF signaling pathway AKT1, AKT2, AKT3, BAD, CASP9, CDC42, CHP, HRAS, KDR, KRAS, MAP2K1, MAP2K2, MAPK1, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPKAPK2, MAPKAPK3, NFAT5, NFATC1, NFATC2, NFATC3, NFATC4, NOS3, NRAS, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCG1, PLCG2, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKCA, PRKCB1, PRKCG, PTGS2, PTK2, PXN, RAC1, RAC2, RAC3, RAF1, SH2D2A, SHC2, SPHK1, SPHK2, SRC, VEGFA 66 AKT1(2), AKT2(5), BAD(1), CASP9(2), KDR(8), MAP2K1(3), MAPK1(2), MAPK12(2), MAPK14(3), MAPK3(2), MAPKAPK2(3), MAPKAPK3(1), NFAT5(5), NFATC1(1), NFATC2(3), NFATC3(4), NFATC4(4), NOS3(2), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLCG1(4), PLCG2(9), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKCA(2), PRKCG(8), PTGS2(2), PTK2(5), RAF1(4), SH2D2A(1), SPHK2(1), SRC(3), VEGFA(2) 16131894 136 51 134 47 60 24 3 30 19 0 0.89 1.00 508 HSA04740_OLFACTORY_TRANSDUCTION Genes involved in olfactory transduction ADCY3, ADRBK2, ARRB2, CALM1, CALM2, CALM3, CALML3, CALML6, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CLCA1, CLCA2, CLCA4, CNGA3, CNGA4, CNGB1, GNAL, GUCA1A, GUCA1B, GUCA1C, PDC, PDE1C, PRKACA, PRKACB, PRKACG, PRKG1, PRKG2, PRKX, PRKY 30 ADCY3(1), ADRBK2(1), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CLCA1(4), CLCA2(4), CLCA4(5), CNGA3(5), CNGA4(5), CNGB1(7), GNAL(3), GUCA1A(1), GUCA1B(2), PDC(2), PDE1C(7), PRKACB(1), PRKACG(2), PRKG1(4), PRKG2(3), PRKX(2) 7189306 66 29 65 30 22 14 2 20 8 0 0.90 1.00 509 HSA00340_HISTIDINE_METABOLISM Genes involved in histidine metabolism ABP1, ACY3, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH3B1, ALDH3B2, ALDH7A1, ALDH9A1, AMDHD1, AOC2, AOC3, ASPA, CARM1, CNDP1, DDC, FTCD, HAL, HARS, HARS2, HDC, HEMK1, HNMT, LCMT1, LCMT2, MAOA, MAOB, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, PRPS1, PRPS2, UROC1, WBSCR22 41 ABP1(1), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH3B1(2), ALDH3B2(1), ALDH7A1(1), ALDH9A1(1), AMDHD1(4), AOC2(4), AOC3(4), ASPA(3), CARM1(2), CNDP1(3), DDC(1), FTCD(2), HAL(3), HARS(2), HARS2(2), HDC(3), HNMT(4), LCMT1(1), LCMT2(2), MAOA(2), METTL2B(1), METTL6(5), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), PRPS2(2), UROC1(1), WBSCR22(1) 9236330 86 37 86 30 32 26 0 23 5 0 0.90 1.00 510 HSA00460_CYANOAMINO_ACID_METABOLISM Genes involved in cyanoamino acid metabolism ASRGL1, GBA, GBA3, GGT1, GGTL3, GGTL4, SHMT1, SHMT2 5 GBA3(3), SHMT1(1), SHMT2(2) 1098501 6 6 6 5 2 1 0 0 3 0 0.90 1.00 511 DNAFRAGMENTPATHWAY DNA fragmentation during apoptosis is effected by DFF, a caspase-activated DNAse, and by endonuclease G. CASP3, CASP7, DFFA, DFFB, ENDOG, GZMB, HMGB1, HMGB2, TOP2A, TOP2B 10 CASP3(1), CASP7(1), DFFA(2), DFFB(2), GZMB(1), HMGB1(1), HMGB2(1), TOP2A(2), TOP2B(5) 2407943 16 12 15 4 3 4 0 8 1 0 0.90 1.00 512 HSA00280_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION Genes involved in valine, leucine and isoleucine degradation ABAT, ACAA1, ACAA2, ACADM, ACADS, ACAT1, ACAT2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH6A1, ALDH7A1, ALDH9A1, AOX1, AUH, BCAT1, BCAT2, BCKDHA, BCKDHB, DBT, DLD, ECHS1, EHHADH, HADH, HADHA, HADHB, HIBADH, HIBCH, HMGCL, HMGCS1, HMGCS2, HSD17B10, HSD17B4, IVD, MCCC1, MCCC2, MCEE, MUT, OXCT1, OXCT2, PCCA, PCCB 44 ABAT(5), ACAA1(2), ACADM(3), ACAT1(1), ACAT2(2), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH6A1(3), ALDH7A1(1), ALDH9A1(1), AOX1(5), AUH(1), BCAT1(1), BCAT2(1), BCKDHA(3), BCKDHB(1), ECHS1(2), EHHADH(2), HADH(1), HADHA(2), HADHB(1), HMGCS1(1), HSD17B10(1), HSD17B4(3), MCCC1(7), MCCC2(2), MCEE(1), MUT(3), OXCT1(3), OXCT2(1), PCCA(3), PCCB(3) 10112446 84 38 84 23 35 19 0 21 9 0 0.90 1.00 513 CD40PATHWAY The CD40 receptor is a TNF-type receptor that regulates immunoglobulin expression in B cells and moderates T cell activation via T-cell expression of its ligand. CHUK, DUSP1, IKBKAP, IKBKB, IKBKG, MAP3K1, MAP3K14, NFKB1, NFKBIA, RELA, TNFAIP3, TNFRSF5, TNFSF5, TRAF3, TRAF6 12 CHUK(4), DUSP1(2), IKBKAP(2), IKBKB(2), MAP3K1(6), MAP3K14(2), NFKB1(3), RELA(2), TNFAIP3(2), TRAF3(4), TRAF6(4) 4284527 33 20 33 13 17 3 0 8 5 0 0.90 1.00 514 HSA00626_NAPHTHALENE_AND_ANTHRACENE_DEGRADATION Genes involved in naphthalene and anthracene degradation CARM1, DHRS1, DHRS2, DHRS3, DHRS7, DHRSX, HEMK1, LCMT1, LCMT2, METTL2B, METTL6, PRMT2, PRMT3, PRMT5, PRMT6, PRMT7, PRMT8, WBSCR22 17 CARM1(2), DHRS1(1), DHRS2(2), DHRS3(2), LCMT1(1), LCMT2(2), METTL2B(1), METTL6(5), PRMT2(1), PRMT3(2), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), WBSCR22(1) 3348362 27 17 27 12 9 6 0 8 4 0 0.90 1.00 515 PGC1APATHWAY PCG-1a is expressed in skeletal muscle, heart muscle, and brown fat, and is a coactivator for receptors such as glucocorticoid receptor and thyroid hormone receptor. CALM1, CALM2, CALM3, CAMK1, CAMK1G, CAMK2A, CAMK2B, CAMK2D, CAMK2G, CAMK4, ESRRA, HDAC5, MEF2A, MEF2B, MEF2C, MEF2D, PPARA, PPARGC1, PPP3CA, PPP3CB, PPP3CC, SLC2A4, SYT1, YWHAH 23 CAMK1(1), CAMK1G(3), CAMK2A(1), CAMK2B(2), CAMK2D(2), CAMK2G(2), CAMK4(2), ESRRA(2), HDAC5(1), MEF2A(3), MEF2C(7), MEF2D(1), PPARA(1), PPP3CA(1), PPP3CB(4), PPP3CC(3), SLC2A4(3), SYT1(1) 4839155 40 22 40 22 16 9 2 8 5 0 0.91 1.00 516 NITROGEN_METABOLISM AMT, ASNS, CA1, CA12, CA14, CA2, CA3, CA4, CA5A, CA5B, CA6, CA7, CA8, CA9, CPS1, CTH, GLS, GLS2, GLUD1, GLUL, HAL 21 ASNS(1), CA1(1), CA14(2), CA2(1), CA3(1), CA4(1), CA5A(1), CA6(2), CA8(2), CA9(2), CPS1(8), CTH(1), GLS2(2), GLUD1(2), GLUL(3), HAL(3) 4375463 33 20 33 18 13 9 0 5 6 0 0.91 1.00 517 IRINOTECAN_PATHWAY_PHARMGKB ABCC1, ABCC2, ABCG2, BCHE, CES1, CES2, CES4, CYP3A4, CYP3A5, UGT1A10, UGT1A8, UGT1A7, UGT1A6, UGT1A5, UGT1A9, UGT1A4, UGT1A1, UGT1A3, UGT1A6 17 ABCC1(8), ABCC2(11), ABCG2(5), BCHE(7), CES1(4), CES2(1), CYP3A4(1), CYP3A5(3), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5) 5298093 55 23 55 18 21 11 0 16 7 0 0.91 1.00 518 HSA00220_UREA_CYCLE_AND_METABOLISM_OF_AMINO_GROUPS Genes involved in urea cycle and metabolism of amino groups ABP1, ACY1, ADC, AGMAT, ALDH18A1, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, AMD1, AOC2, AOC3, ARG1, ARG2, ASL, ASS1, CPS1, GATM, MAOA, MAOB, NAGS, ODC1, OTC, SAT1, SAT2, SMS, SRM 30 ABP1(1), ACY1(2), ADC(1), ALDH18A1(5), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), AOC2(4), AOC3(4), ARG1(1), ARG2(4), ASS1(1), CPS1(8), GATM(1), MAOA(2), ODC1(2), OTC(4), SAT1(4), SAT2(1), SMS(2) 6938203 67 31 65 23 21 21 0 17 8 0 0.91 1.00 519 HSA01031_GLYCAN_STRUCTURES_BIOSYNTHESIS_2 Genes involved in glycan structures - biosynthesis 2 A4GALT, ABO, B3GALNT1, B3GALT1, B3GALT2, B3GALT4, B3GALT5, B3GNT1, B3GNT2, B3GNT3, B3GNT4, B3GNT5, B4GALNT1, B4GALT1, B4GALT2, B4GALT3, B4GALT4, B4GALT6, FUT1, FUT2, FUT3, FUT4, FUT5, FUT6, FUT7, FUT9, GBGT1, GCNT2, PIGA, PIGB, PIGC, PIGF, PIGG, PIGH, PIGK, PIGL, PIGM, PIGN, PIGO, PIGP, PIGQ, PIGS, PIGT, PIGU, PIGV, PIGX, PIGZ, ST3GAL1, ST3GAL2, ST3GAL3, ST3GAL4, ST3GAL5, ST3GAL6, ST6GALNAC3, ST6GALNAC4, ST6GALNAC5, ST6GALNAC6, ST8SIA1, ST8SIA5, UGCG, UGCGL1, UGCGL2 60 A4GALT(3), ABO(2), B3GALNT1(3), B3GALT1(1), B3GALT2(3), B3GALT4(1), B3GALT5(2), B3GNT1(2), B3GNT2(1), B3GNT4(1), B3GNT5(1), B4GALNT1(3), B4GALT1(5), B4GALT2(3), B4GALT3(6), B4GALT6(5), FUT1(1), FUT2(1), FUT3(3), FUT6(1), FUT9(4), GCNT2(9), PIGA(1), PIGB(1), PIGG(1), PIGK(3), PIGM(1), PIGN(1), PIGO(2), PIGQ(1), PIGS(2), PIGT(2), PIGX(2), ST3GAL1(1), ST3GAL2(1), ST3GAL3(4), ST3GAL4(2), ST3GAL6(4), ST6GALNAC3(3), ST6GALNAC4(1), ST6GALNAC5(4), ST6GALNAC6(3), ST8SIA1(3), ST8SIA5(4), UGCG(2) 11368502 110 40 110 30 45 21 4 23 17 0 0.91 1.00 520 GLYCOSPHINGOLIPID_METABOLISM ARSA, ARSB, ARSD, ARSE, ASAH1, GAL3ST1, GALC, GBA, GBAP, GLA, GLB1, LCT, NEU1, NEU2, NEU3, NEU4, PPAP2A, PPAP2B, PPAP2C, SMPD1, SMPD2, SPTLC1, SPTLC2, UGCG 23 ARSA(1), ARSB(5), ARSD(3), ARSE(2), ASAH1(3), GALC(1), GLA(4), GLB1(3), LCT(15), NEU2(1), NEU3(1), PPAP2B(1), SMPD1(6), SPTLC1(4), SPTLC2(2), UGCG(2) 5570695 54 25 54 17 19 14 2 16 3 0 0.92 1.00 521 ARAPPATHWAY ADP-ribosylation factors (ARFs), members of the Ras superfamily, regulate eukaryotic vesicular trafficking and activate phospholipase D's. ARF1, ARFGAP1, ARFGAP3, ARFGEF2, BIG1, CENTD1, CENTD2, CLTA, CLTB, COP, COPA, DDEF1, DDEF2, GBF1, GPLD1, KDELR1, KDELR2, KDELR3, PSCD1, PSCD2, PSCD3, PSCD4 12 ARFGAP1(1), ARFGAP3(3), ARFGEF2(5), CLTA(1), COPA(1), GBF1(11), GPLD1(4), KDELR1(2), KDELR3(1) 3784628 29 20 29 12 12 7 0 8 2 0 0.92 1.00 522 HYPERTROPHY_MODEL ADAM10, ANKRD1, ATF3, CYR61, DUSP14, EIF4E, EIF4EBP1, GDF8, HBEGF, IFNG, IFRD1, IL18, IL1A, IL1R1, JUND, MYOG, NR4A3, TCF8, VEGF, WDR1 17 ADAM10(1), ANKRD1(4), ATF3(1), CYR61(2), HBEGF(1), IFNG(1), IFRD1(2), IL1A(1), IL1R1(3), NR4A3(2), WDR1(3) 2572830 21 13 21 5 5 9 0 5 2 0 0.92 1.00 523 CELL_CYCLE_KEGG ABL1, ASK, ATM, BUB1, BUB1B, BUB3, CCNA1, CCNA2, CCNB1, CCNB2, CCNB3, CCND2, CCND3, CCNE1, CCNE2, CCNH, CDAN1, CDC14A, CDC14B, CDC14B, CDC14C, CDC2, CDC20, CDC25A, CDC25B, CDC25C, CDC45L, CDC6, CDC7, CDH1, CDK2, CDK4, CDKN1A, CDKN2A, CHEK1, CHEK2, DTX4, E2F1, E2F2, E2F3, E2F4, E2F5, E2F6, EP300, ESPL1, FLJ14001, GADD45A, GSK3B, HDAC1, HDAC2, HDAC3, HDAC4, HDAC5, HDAC6, HDAC7A, HDAC8, MAD1L1, MAD2L1, MAD2L2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, MPEG1, MPL, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, PLK1, PRKDC, PTPRA, PTTG1, PTTG2, PTTG3, RB1, RBL1, SKP2, SMAD4, SMC1L1, TBC1D8, TFDP1, TGFB1, TP53, WEE1 79 ABL1(4), BUB1(4), BUB1B(3), BUB3(2), CCNA1(4), CCNA2(3), CCNB1(2), CCNB2(2), CCNB3(4), CCND2(1), CCND3(1), CCNE1(3), CCNE2(1), CCNH(2), CDAN1(1), CDC14A(1), CDC14B(3), CDC20(3), CDC25A(2), CDC25B(5), CDC25C(3), CDC7(2), CDH1(4), CDK2(2), CDK4(2), CDKN1A(1), CDKN2A(1), CHEK1(1), CHEK2(1), DTX4(3), E2F2(1), E2F3(1), E2F4(1), E2F5(2), EP300(13), ESPL1(8), GSK3B(7), HDAC1(2), HDAC2(2), HDAC3(2), HDAC4(5), HDAC5(1), HDAC6(4), MAD1L1(1), MAD2L1(1), MAD2L2(1), MCM3(1), MCM4(4), MCM5(3), MCM6(3), MCM7(2), MDM2(4), MPEG1(2), MPL(1), ORC1L(1), ORC3L(1), ORC4L(1), ORC5L(1), PCNA(2), PLK1(6), PRKDC(13), PTPRA(2), PTTG1(1), RB1(4), RBL1(3), SKP2(1), TBC1D8(5), TFDP1(4), TGFB1(1), WEE1(3) 24255755 192 58 192 52 51 56 4 55 25 1 0.92 1.00 524 RARRXRPATHWAY RXR and RAR suppress transcription in the absence of ligand and, on binding trans- or 9-cis-retinoic acid, are ubiquitinated to allow transcription to proceed. ERCC3, GTF2A1, GTF2B, GTF2E1, GTF2F1, HDAC3, NCOA1, NCOA2, NCOA3, NCOR2, PCAF, POLR2A, RARA, RXRA, TBP 14 ERCC3(6), GTF2A1(2), GTF2B(1), GTF2E1(5), GTF2F1(3), HDAC3(2), NCOA1(6), NCOA2(4), NCOA3(6), NCOR2(2), POLR2A(6), RXRA(1), TBP(1) 5896278 45 26 45 17 15 15 2 11 2 0 0.92 1.00 525 PHOTOSYNTHESIS ATP5E, ATP5O, ATP6AP1, ATP6V0A1, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0C, SHMT1, ATP6V0D1, ATP6V0E, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, FDXR 22 ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), FDXR(1), SHMT1(1) 3757605 30 19 29 9 11 11 1 4 3 0 0.92 1.00 526 GLUCOCORTICOID_MINERALOCORTICOID_METABOLISM CPN2, CYP11A1, CYP11B2, CYP17A1, HSD11B1, HSD11B2, HSD3B1, HSD3B2 8 CPN2(1), CYP11A1(2), CYP11B2(5), CYP17A1(2), HSD11B1(1), HSD3B1(2) 1607809 13 9 13 6 6 3 0 4 0 0 0.92 1.00 527 IL22BPPATHWAY IL-22 is produced by T cells and induces the acute phase inflammatory response in hepatocytes. IL10RA, IL22, IL22RA1, IL22RA2, JAK1, JAK2, JAK3, SOCS3, STAT1, STAT3, STAT5A, STAT5B, TYK2 13 IL10RA(1), IL22(2), IL22RA1(1), JAK1(3), JAK2(6), JAK3(6), STAT1(6), STAT3(2), STAT5B(2), TYK2(1) 4333454 30 20 29 14 12 6 2 7 2 1 0.92 1.00 528 HDACPATHWAY Myocyte enhancer factor MEF2 activates transcription of genes required for muscle cell differentiation and is inhibited by histone deacetylases. AKT1, AVP, CABIN1, CALM1, CALM2, CALM3, CAMK1, CAMK1G, HDAC5, IGF1, IGF1R, INS, INSR, MAP2K6, MAPK14, MAPK7, MEF2A, MEF2B, MEF2C, MEF2D, MYOD1, NFATC1, NFATC2, PIK3CA, PIK3R1, PPP3CA, PPP3CB, PPP3CC, SYT1, YWHAH 29 AKT1(2), CABIN1(9), CAMK1(1), CAMK1G(3), HDAC5(1), IGF1(2), IGF1R(7), INSR(5), MAP2K6(2), MAPK14(3), MAPK7(3), MEF2A(3), MEF2C(7), MEF2D(1), NFATC1(1), NFATC2(3), PIK3R1(5), PPP3CA(1), PPP3CB(4), PPP3CC(3), SYT1(1) 7558370 67 34 67 27 31 12 2 12 10 0 0.92 1.00 529 CHONDROITIN B3GAT3, B4GALT7, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, XYLT1, XYLT2 8 HS3ST1(1), HS3ST2(1), HS3ST3B1(2), XYLT1(4), XYLT2(2) 1555727 10 9 10 12 4 1 1 3 1 0 0.92 1.00 530 HEPARAN_SULFATE_BIOSYNTHESIS B3GAT3, B4GALT7, HS3ST1, HS3ST2, HS3ST3A1, HS3ST3B1, XYLT1, XYLT2 8 HS3ST1(1), HS3ST2(1), HS3ST3B1(2), XYLT1(4), XYLT2(2) 1555727 10 9 10 12 4 1 1 3 1 0 0.92 1.00 531 UREA_CYCLE_AND_METABOLISM_OF_AMINO_GROUPS ACY1, ALDH18A1, ARG1, ARG2, ASL, ASS, CKB, CKM, CKMT1, CKMT1B, CKMT1A, CKMT2, CPS1, GAMT, GATM, GLUD1, NAGS, OAT, ODC1, OTC, PYCR1, SMS 20 ACY1(2), ALDH18A1(5), ARG1(1), ARG2(4), CKM(4), CKMT1B(1), CKMT2(2), CPS1(8), GAMT(1), GATM(1), GLUD1(2), ODC1(2), OTC(4), SMS(2) 4045549 39 21 39 14 11 12 0 9 7 0 0.92 1.00 532 PENTOSE_PHOSPHATE_PATHWAY ALDOA, ALDOB, ALDOC, FBP1, FBP2, G6PD, GPI, H6PD, PFKM, PFKP, PGD, PGLS, PGM1, PGM3, PRPS1, PRPS1L1, PRPS2, RBKS, RPE, RPE, LOC440001, RPIA, TAL1, TALDO1, TALDO1, HSUP1, TKT 23 ALDOA(1), ALDOB(5), ALDOC(1), FBP2(2), G6PD(2), GPI(1), H6PD(3), PFKM(1), PFKP(2), PGD(1), PGM1(2), PGM3(4), PRPS1L1(1), PRPS2(2), RPE(2), RPIA(3), TALDO1(3), TKT(3) 4756585 39 26 39 14 15 8 0 15 1 0 0.92 1.00 533 NO2IL12PATHWAY Macrophages activate NK cells by releasing IL-12, which induces NK cytotoxic activity in coordination with NO produced by inducible nitric oxide synthase II. CCR5, CD2, CD3D, CD3E, CD3G, CD3Z, CD4, CXCR3, IFNG, IL12A, IL12B, IL12RB1, IL12RB2, JAK2, NOS2A, STAT4, TYK2 15 CCR5(1), CD2(3), CD3D(1), CD3G(2), CD4(2), IFNG(1), IL12B(2), IL12RB1(2), IL12RB2(5), JAK2(6), TYK2(1) 3385591 26 15 27 17 5 10 1 6 3 1 0.93 1.00 534 HSA00310_LYSINE_DEGRADATION Genes involved in lysine degradation AADAT, AASDHPPT, AASS, ACAT1, ACAT2, AKR1B10, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH7A1, ALDH9A1, BBOX1, DLST, DOT1L, ECHS1, EHHADH, EHMT1, EHMT2, GCDH, HADH, HADHA, HSD17B10, HSD17B4, HSD3B7, NSD1, OGDH, OGDHL, PIPOX, PLOD1, PLOD2, PLOD3, RDH11, RDH12, RDH13, RDH14, SETD1A, SETD7, SETDB1, SHMT1, SHMT2, SPCS1, SPCS3, SUV39H1, SUV39H2, TMLHE 47 AADAT(1), AASDHPPT(2), AASS(7), ACAT1(1), ACAT2(2), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH7A1(1), ALDH9A1(1), BBOX1(1), DOT1L(3), ECHS1(2), EHHADH(2), EHMT1(2), EHMT2(1), GCDH(3), HADH(1), HADHA(2), HSD17B10(1), HSD17B4(3), HSD3B7(2), NSD1(11), OGDH(4), OGDHL(8), PIPOX(4), PLOD1(3), PLOD2(4), PLOD3(3), RDH12(2), RDH13(1), SETD1A(7), SETD7(2), SETDB1(7), SHMT1(1), SHMT2(2), SPCS1(1), SUV39H1(1), SUV39H2(2), TMLHE(1) 13458147 120 46 120 33 50 22 0 32 16 0 0.93 1.00 535 SODDPATHWAY Some members of the tumor necrosis factor receptor family have cytoplasmic death domains that promote apoptosis when active and are repressed by silencers called SODDs. BAG4, BIRC3, CASP8, FADD, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF2 9 BAG4(2), BIRC3(2), RIPK1(2), TNFRSF1A(1), TRADD(1), TRAF2(1) 1666241 9 9 9 4 3 2 1 3 0 0 0.93 1.00 536 IL2RBPATHWAY The beta subunit of the IL-2 receptor is required for IL-2 and IL-15 signal recognition and activates JAK kinase on ligand binding. AKT1, BAD, BCL2, BCL2L1, CBL, CFLAR, CRKL, E2F1, FOS, GRB2, HRAS, IL2RA, IL2RB, IL2RG, IRS1, JAK1, JAK3, MAPK1, MAPK3, MYC, NMI, PIK3CA, PIK3R1, PPIA, PTPN6, RAF1, RPS6KB1, SHC1, SOCS1, SOCS3, SOS1, STAT5A, STAT5B, SYK, TNFRSF6, TNFSF6, ZNFN1A3 33 AKT1(2), BAD(1), BCL2(1), BCL2L1(1), CBL(2), CFLAR(2), CRKL(2), GRB2(2), IL2RA(2), IL2RB(1), IRS1(5), JAK1(3), JAK3(6), MAPK1(2), MAPK3(2), NMI(1), PIK3R1(5), PTPN6(4), RAF1(4), RPS6KB1(3), SHC1(3), SOS1(5), STAT5B(2) 7891022 61 31 58 23 21 12 3 17 8 0 0.93 1.00 537 HSA04330_NOTCH_SIGNALING_PATHWAY Genes involved in Notch signaling pathway ADAM17, APH1A, CIR, CREBBP, CTBP1, CTBP2, DLL1, DLL3, DLL4, DTX1, DTX2, DTX3, DTX3L, DTX4, DVL1, DVL2, DVL3, EP300, GCN5L2, HDAC1, HDAC2, HES1, JAG1, JAG2, LFNG, LOC652788, MAML1, MAML2, MAML3, MFNG, NCOR2, NCSTN, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NUMB, NUMBL, PCAF, PSEN1, PSEN2, PSENEN, PTCRA, RBPJ, RBPJL, RFNG, SNW1 43 ADAM17(6), CREBBP(21), CTBP1(1), CTBP2(2), DLL1(1), DLL3(2), DLL4(1), DTX1(4), DTX2(3), DTX3L(3), DTX4(3), DVL2(8), DVL3(2), EP300(13), HDAC1(2), HDAC2(2), HES1(1), JAG1(7), MAML1(1), MAML2(3), MAML3(1), NCOR2(2), NCSTN(5), NOTCH2(11), NOTCH3(12), NOTCH4(3), NUMB(2), NUMBL(3), PSEN1(3), PSEN2(2), PTCRA(1), RBPJ(1), RBPJL(3), SNW1(4) 15931739 139 51 138 54 48 42 1 27 21 0 0.93 1.00 538 IL1RPATHWAY The cytokine IL-1 stimulates its primary receptor, IL-1R1, which induces transcription of inflammation-related genes such as interferons. CHUK, IFNA1, IFNB1, IKBKB, IL1A, IL1B, IL1R1, IL1RAP, IL1RN, IL6, IRAK1, IRAK2, IRAK3, JUN, MAP2K3, MAP2K6, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MAPK14, MAPK8, MYD88, NFKB1, NFKBIA, RELA, SITPEC, TGFB1, TGFB2, TGFB3, TNF, TOLLIP, TRAF6 31 CHUK(4), IFNA1(1), IFNB1(1), IKBKB(2), IL1A(1), IL1R1(3), IL1RN(2), IL6(1), IRAK1(1), IRAK2(8), IRAK3(1), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAP3K14(2), MAP3K7(2), MAPK14(3), MAPK8(2), MYD88(1), NFKB1(3), RELA(2), TGFB1(1), TGFB2(5), TOLLIP(1), TRAF6(4) 6921431 61 27 61 18 26 9 1 18 7 0 0.93 1.00 539 HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY Genes involved in adipocytokine signaling pathway ACACB, ACSL1, ACSL3, ACSL4, ACSL5, ACSL6, ADIPOQ, ADIPOR1, ADIPOR2, AGRP, AKT1, AKT2, AKT3, CAMKK1, CAMKK2, CD36, CHUK, CPT1A, CPT1B, CPT1C, CPT2, FRAP1, G6PC, G6PC2, IKBKB, IKBKG, IRS1, IRS2, IRS4, JAK1, JAK2, JAK3, LEP, LEPR, MAPK10, MAPK8, MAPK9, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NPY, PCK1, PCK2, POMC, PPARA, PPARGC1A, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKAG1, PRKAG2, PRKAG3, PRKCQ, PTPN11, RELA, RXRA, RXRB, RXRG, SLC2A1, SLC2A4, SOCS3, STAT3, STK11, TNF, TNFRSF1A, TNFRSF1B, TRADD, TRAF2, TYK2 70 ACACB(14), ACSL1(3), ACSL3(6), ACSL4(4), ACSL5(4), ACSL6(5), ADIPOQ(4), ADIPOR1(1), ADIPOR2(2), AKT1(2), AKT2(5), CAMKK1(1), CAMKK2(1), CD36(1), CHUK(4), CPT1A(5), CPT1B(5), CPT2(1), G6PC(3), IKBKB(2), IRS1(5), IRS4(11), JAK1(3), JAK2(6), JAK3(6), LEP(1), LEPR(5), MAPK10(4), MAPK8(2), MAPK9(3), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), NPY(1), PCK2(3), POMC(2), PPARA(1), PPARGC1A(5), PRKAA1(2), PRKAA2(6), PRKAB1(1), PRKAB2(1), PRKAG1(1), PRKAG2(2), PRKAG3(4), PRKCQ(4), PTPN11(2), RELA(2), RXRA(1), RXRB(2), RXRG(3), SLC2A4(3), STAT3(2), TNFRSF1A(1), TRADD(1), TRAF2(1), TYK2(1) 19267496 179 55 178 65 55 48 4 54 17 1 0.93 1.00 540 VIPPATHWAY Apoptosis of activated T cells is inhibited by vasoactive intestinal peptide (VIP) and its relative PACAP. CALM1, CALM2, CALM3, CHUK, EGR2, EGR3, GNAQ, MAP3K1, MYC, NFATC1, NFATC2, NFKB1, NFKBIA, PLCG1, PPP3CA, PPP3CB, PPP3CC, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RELA, SYT1, VIP, VIPR2 27 CHUK(4), EGR2(6), EGR3(2), GNAQ(3), MAP3K1(6), NFATC1(1), NFATC2(3), NFKB1(3), PLCG1(4), PPP3CA(1), PPP3CB(4), PPP3CC(3), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), RELA(2), SYT1(1), VIPR2(3) 6353862 53 29 52 16 25 9 2 8 9 0 0.94 1.00 541 NICOTINATE_AND_NICOTINAMIDE_METABOLISM AOX1, CD38, ENPP1, ENPP3, NADSYN1, NMNAT1, NMNAT2, NNMT, NNT, NP, NT5C, NT5E, NT5M, QPRT 13 AOX1(5), CD38(1), ENPP1(4), ENPP3(3), NADSYN1(2), NMNAT1(1), NMNAT2(1), NNMT(1), NNT(1), NT5E(2), NT5M(1), QPRT(1) 3417287 23 16 23 11 9 8 0 4 2 0 0.94 1.00 542 HSA00600_SPHINGOLIPID_METABOLISM Genes involved in sphingolipid metabolism ARSA, ARSD, ARSE, ASAH1, ASAH3L, B4GALT6, CERK, DEGS1, DEGS2, ENPP7, FVT1, GAL3ST1, GALC, GBA, GLA, GLB1, LCT, NEU1, NEU2, NEU3, NEU4, PHCA, PPAP2A, PPAP2B, PPAP2C, SGMS1, SGMS2, SGPP1, SGPP2, SMPD1, SMPD2, SMPD3, SMPD4, SPHK1, SPHK2, SPTLC1, SPTLC2, UGCG, UGT8 36 ARSA(1), ARSD(3), ARSE(2), ASAH1(3), B4GALT6(5), CERK(1), DEGS1(1), ENPP7(1), GALC(1), GLA(4), GLB1(3), LCT(15), NEU2(1), NEU3(1), PPAP2B(1), SGMS1(2), SGMS2(4), SGPP2(2), SMPD1(6), SMPD3(3), SMPD4(1), SPHK2(1), SPTLC1(4), SPTLC2(2), UGCG(2), UGT8(6) 8210873 76 34 75 26 25 23 2 21 5 0 0.94 1.00 543 41BBPATHWAY TNF-type receptor 4-1BB is bound by TRAF1 to activate the MAP kinase pathway in activated T cells. ATF2, CHUK, IFNG, IKBKB, IL2, IL4, JUN, MAP3K1, MAP3K5, MAP4K5, MAPK14, MAPK8, NFKB1, NFKBIA, RELA, TNFRSF9, TNFSF9, TRAF2 18 CHUK(4), IFNG(1), IKBKB(2), IL2(3), IL4(3), MAP3K1(6), MAP3K5(5), MAP4K5(2), MAPK14(3), MAPK8(2), NFKB1(3), RELA(2), TNFRSF9(2), TRAF2(1) 4627261 39 20 39 11 17 8 1 11 2 0 0.94 1.00 544 LYSINE_DEGRADATION AADAT, AASDH, AASDHPPT, AASS, ACAT1, ACAT2, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH9A1, ATP6V0C, SHMT1, BAT8, BBOX1, DLST, DLSTP, DOT1L, ECHS1, EHHADH, EHMT1, EHMT2, GCDH, HADHA, PLOD1, PLOD2, PLOD3, SDS, SHMT1, SHMT2, TMLHE 31 AADAT(1), AASDH(3), AASDHPPT(2), AASS(7), ACAT1(1), ACAT2(2), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH9A1(1), BBOX1(1), DOT1L(3), ECHS1(2), EHHADH(2), EHMT1(2), EHMT2(1), GCDH(3), HADHA(2), PLOD1(3), PLOD2(4), PLOD3(3), SDS(2), SHMT1(1), SHMT2(2), TMLHE(1) 8503041 76 34 76 17 29 17 0 20 10 0 0.94 1.00 545 HSA00061_FATTY_ACID_BIOSYNTHESIS Genes involved in fatty acid biosynthesis ACACA, ACACB, FASN, MCAT, OLAH, OXSM 6 ACACA(14), ACACB(14), FASN(1), MCAT(1), OLAH(1), OXSM(4) 3564831 35 18 35 8 13 10 0 10 2 0 0.94 1.00 546 HSA00190_OXIDATIVE_PHOSPHORYLATION Genes involved in oxidative phosphorylation ATP12A, ATP4A, ATP4B, ATP5A1, ATP5B, ATP5C1, ATP5D, ATP5E, ATP5F1, ATP5G1, ATP5G2, ATP5G3, ATP5H, ATP5I, ATP5J, ATP5J2, ATP5L, ATP5O, ATP6, ATP6AP1, ATP6V0A1, ATP6V0A2, ATP6V0A4, ATP6V0B, ATP6V0C, ATP6V0D1, ATP6V0D2, ATP6V0E1, ATP6V1A, ATP6V1B1, ATP6V1B2, ATP6V1C1, ATP6V1C2, ATP6V1D, ATP6V1E1, ATP6V1E2, ATP6V1F, ATP6V1G1, ATP6V1G2, ATP6V1G3, ATP6V1H, ATP8, COX1, COX10, COX15, COX17, COX2, COX3, COX4I1, COX4I2, COX5A, COX5B, COX6A1, COX6A2, COX6B1, COX6B2, COX6C, COX7A1, COX7A2, COX7B, COX7B2, COX7C, COX8A, COX8C, CYC1, CYTB, LHPP, ND1, ND2, ND3, ND4, ND4L, ND5, ND6, NDUFA1, NDUFA10, NDUFA11, NDUFA12, NDUFA13, NDUFA2, NDUFA3, NDUFA4, NDUFA4L2, NDUFA5, NDUFA6, NDUFA7, NDUFA8, NDUFA9, NDUFAB1, NDUFB1, NDUFB10, NDUFB11, NDUFB2, NDUFB3, NDUFB4, NDUFB5, NDUFB6, NDUFB7, NDUFB8, NDUFB9, NDUFC1, NDUFC2, NDUFS1, NDUFS2, NDUFS3, NDUFS4, NDUFS5, NDUFS6, NDUFS7, NDUFS8, NDUFV1, NDUFV2, NDUFV3, PPA1, PPA2, SDHA, SDHB, SDHC, SDHD, TCIRG1, UCRC, UQCR, UQCRB, UQCRC1, UQCRC2, UQCRFS1, UQCRH, UQCRQ 113 ATP12A(13), ATP4A(8), ATP4B(1), ATP5A1(2), ATP5B(4), ATP5C1(2), ATP5D(1), ATP5F1(1), ATP5G3(1), ATP5J2(1), ATP5O(2), ATP6AP1(2), ATP6V0A1(2), ATP6V0A2(2), ATP6V0A4(4), ATP6V0D1(2), ATP6V0D2(6), ATP6V1A(2), ATP6V1B1(4), ATP6V1B2(1), ATP6V1C1(2), ATP6V1C2(2), ATP6V1E1(1), ATP6V1E2(2), ATP6V1G2(1), ATP6V1G3(1), ATP6V1H(2), COX10(2), COX15(1), COX17(1), COX4I1(2), COX4I2(2), COX6A2(1), COX6C(1), COX7A1(1), COX7B2(1), COX8C(1), CYC1(1), LHPP(1), NDUFA1(1), NDUFA10(2), NDUFA12(2), NDUFA13(1), NDUFA4(1), NDUFA9(2), NDUFB1(1), NDUFB2(1), NDUFB3(1), NDUFB6(1), NDUFB9(1), NDUFC2(1), NDUFS1(4), NDUFS3(2), NDUFS6(2), NDUFV1(2), PPA1(2), PPA2(1), SDHA(5), SDHB(2), SDHD(1), TCIRG1(2), UQCRB(2), UQCRC1(2), UQCRC2(2), UQCRFS1(1), UQCRH(1) 13107104 133 44 132 32 55 36 1 29 12 0 0.94 1.00 547 HSA04210_APOPTOSIS Genes involved in apoptosis AIFM1, AKT1, AKT2, AKT3, APAF1, ATM, BAD, BAX, BCL2, BCL2L1, BID, BIRC2, BIRC3, BIRC4, CAPN1, CAPN2, CASP10, CASP3, CASP6, CASP7, CASP8, CASP9, CFLAR, CHP, CHUK, CSF2RB, CYCS, DFFA, DFFB, ENDOG, FADD, FAS, FASLG, IKBKB, IKBKG, IL1A, IL1B, IL1R1, IL1RAP, IL3, IL3RA, IRAK1, IRAK2, IRAK3, IRAK4, MAP3K14, MYD88, NFKB1, NFKB2, NFKBIA, NGFB, NTRK1, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PRKACA, PRKACB, PRKACG, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, RELA, RIPK1, TNF, TNFRSF10A, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF1A, TNFSF10, TP53, TRADD, TRAF2 75 AIFM1(1), AKT1(2), AKT2(5), APAF1(7), BAD(1), BAX(1), BCL2(1), BCL2L1(1), BID(1), BIRC2(2), BIRC3(2), CAPN1(2), CAPN2(5), CASP10(2), CASP3(1), CASP6(1), CASP7(1), CASP9(2), CFLAR(2), CHUK(4), CSF2RB(7), DFFA(2), DFFB(2), FASLG(1), IKBKB(2), IL1A(1), IL1R1(3), IL3(3), IRAK1(1), IRAK2(8), IRAK3(1), IRAK4(2), MAP3K14(2), MYD88(1), NFKB1(3), NFKB2(2), NTRK1(6), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PRKACB(1), PRKACG(2), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), RELA(2), RIPK1(2), TNFRSF10A(3), TNFRSF10B(2), TNFRSF1A(1), TNFSF10(1), TRADD(1), TRAF2(1) 16887815 144 50 143 45 52 32 4 38 18 0 0.95 1.00 548 AKAP13PATHWAY A-kinase anchor protein 13 (AKAP13) localizes protein kinase A holoenzyme and is a nucleotide exchange factor for Rho/Rac. AKAP13, ARHA, EDG2, EDG4, EDG7, GNA12, PRKACB, PRKACG, PRKAG1, PRKAR2A, PRKAR2B 7 AKAP13(6), GNA12(2), PRKACB(1), PRKACG(2), PRKAG1(1), PRKAR2B(2) 2362374 14 11 14 10 4 3 0 2 5 0 0.95 1.00 549 DNA_POLYMERASE POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLS 7 POLB(1), POLD1(5), POLD2(1), POLE(17), POLG(4), POLQ(8) 3958168 36 19 34 9 15 6 0 12 3 0 0.95 1.00 550 FASPATHWAY Binding of the Fas ligand to the Fas receptor induces caspase activation and consequent apoptosis in the Fas-expressing cell. ADPRT, ARHGDIB, CASP10, CASP3, CASP6, CASP7, CASP8, CFLAR, DAXX, DFFA, DFFB, FADD, FAF1, JUN, LMNA, LMNB1, LMNB2, MAP2K4, MAP3K1, MAP3K7, MAPK8, PAK1, PAK2, PRKDC, PTPN13, RB1, RIPK2, SPTAN1, TNFRSF6, TNFSF6 25 ARHGDIB(3), CASP10(2), CASP3(1), CASP6(1), CASP7(1), CFLAR(2), DFFA(2), DFFB(2), FAF1(4), LMNB1(2), LMNB2(1), MAP3K1(6), MAP3K7(2), MAPK8(2), PAK1(4), PAK2(2), PRKDC(13), PTPN13(8), RB1(4), RIPK2(3), SPTAN1(9) 9572025 74 33 74 28 16 21 1 23 10 3 0.95 1.00 551 HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM Genes involved in phosphatidylinositol signaling system CALM1, CALM2, CALM3, CALML3, CALML6, CARKL, CDIPT, CDS1, CDS2, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, FN3K, IMPA1, IMPA2, INPP1, INPP4A, INPP4B, INPP5A, INPP5B, INPP5D, INPP5E, INPPL1, ITGB1BP3, ITPK1, ITPKA, ITPKB, ITPR1, ITPR2, ITPR3, OCRL, PI4KA, PI4KB, PIB5PA, PIK3C2A, PIK3C2B, PIK3C2G, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PRKCA, PRKCB1, PRKCG, PTEN, PTPMT1, SKIP, SYNJ1, SYNJ2 71 CDS1(1), CDS2(4), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKI(6), DGKZ(2), IMPA1(2), IMPA2(2), INPP1(2), INPP4A(2), INPP4B(5), INPP5A(2), INPP5B(1), INPP5D(2), INPPL1(3), ITGB1BP3(1), ITPK1(2), ITPKB(4), ITPR1(11), ITPR2(12), ITPR3(11), OCRL(5), PI4KA(11), PI4KB(2), PIK3C2A(2), PIK3C2B(3), PIK3C2G(7), PIK3C3(5), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PIP4K2A(2), PIP4K2B(2), PIP4K2C(3), PIP5K1A(3), PIP5K1B(1), PIP5K1C(3), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLCD1(6), PLCD3(2), PLCD4(2), PLCE1(7), PLCG1(4), PLCG2(9), PLCZ1(3), PRKCA(2), PRKCG(8), PTPMT1(2), SYNJ1(8), SYNJ2(5) 28927441 254 68 251 76 107 52 8 58 29 0 0.95 1.00 552 TOLLPATHWAY Toll-like receptors are activated by bacterial lipoproteins, lipopolysaccharides, and other surface molecules, and activate pro-inflammatory factors such as NF-kB. CD14, CHUK, ELK1, FOS, IKBKB, IKBKG, IRAK1, JUN, LY96, MAP2K3, MAP2K4, MAP2K6, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAPK14, MAPK8, MYD88, NFKB1, NFKBIA, PGLYRP, PPARA, PRKR, RELA, SITPEC, TIRAP, TLR10, TLR2, TLR3, TLR4, TLR6, TLR7, TLR9, TOLLIP, TRAF6 30 CD14(1), CHUK(4), IKBKB(2), IRAK1(1), LY96(2), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAP3K14(2), MAP3K7(2), MAPK14(3), MAPK8(2), MYD88(1), NFKB1(3), PPARA(1), RELA(2), TIRAP(1), TLR10(1), TLR2(2), TLR3(4), TLR4(7), TLR6(2), TLR7(4), TLR9(4), TOLLIP(1), TRAF6(4) 8365015 66 31 66 26 25 11 4 19 7 0 0.95 1.00 553 HSA00330_ARGININE_AND_PROLINE_METABOLISM Genes involved in arginine and proline metabolism ALDH4A1, ARG1, ARG2, ASL, ASS1, CKB, CKM, CKMT1A, CKMT1B, CKMT2, CPS1, DAO, EPRS, GAMT, GATM, GLUD1, GLUD2, GOT1, GOT2, LAP3, NOS1, NOS2A, NOS3, OAT, OTC, P4HA1, P4HA2, P4HA3, PARS2, PRODH, PYCR1, PYCR2, PYCRL, RARS, RARS2 34 ALDH4A1(2), ARG1(1), ARG2(4), ASS1(1), CKM(4), CKMT1B(1), CKMT2(2), CPS1(8), DAO(2), EPRS(10), GAMT(1), GATM(1), GLUD1(2), GLUD2(4), GOT1(5), GOT2(1), LAP3(1), NOS1(5), NOS3(2), OTC(4), P4HA2(2), P4HA3(1), RARS(2), RARS2(3) 8298486 69 31 69 25 22 19 0 17 11 0 0.95 1.00 554 HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM Genes involved in glycerophospholipid metabolism ACHE, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPAT6, ARD1A, CDIPT, CDS1, CDS2, CHAT, CHKA, CHKB, CHPT1, CRLS1, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKI, DGKQ, DGKZ, ESCO1, ESCO2, ETNK1, ETNK2, GNPAT, GPAM, GPD1, GPD1L, GPD2, LCAT, LYCAT, LYPLA1, LYPLA2, LYPLA3, MYST3, MYST4, NAT5, NAT6, PCYT1A, PCYT1B, PEMT, PHOSPHO1, PISD, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLD1, PLD2, PNPLA3, PPAP2A, PPAP2B, PPAP2C, PTDSS1, PTDSS2, SH3GLB1 64 AGPAT1(1), AGPAT3(3), AGPAT4(6), AGPAT6(1), CDS1(1), CDS2(4), CHAT(6), CHKA(2), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKI(6), DGKZ(2), ESCO1(7), ESCO2(3), ETNK1(2), ETNK2(1), GNPAT(1), GPAM(2), GPD1(1), GPD1L(2), GPD2(3), LCAT(1), MYST3(13), MYST4(5), PCYT1A(4), PCYT1B(5), PEMT(1), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PLD1(8), PLD2(1), PNPLA3(4), PPAP2B(1), PTDSS1(4), SH3GLB1(3) 15456321 139 47 138 56 50 38 1 40 10 0 0.95 1.00 555 DEATHPATHWAY Death receptors such as Fas and DR3, 4, and 5 transduce pro-apoptotic signaling by oligomerizing to activate the caspase cascade. APAF1, BCL2, BID, BIRC2, BIRC3, BIRC4, CASP10, CASP3, CASP6, CASP7, CASP8, CASP9, CFLAR, CHUK, CYCS, DFFA, DFFB, FADD, GAS2, LMNA, MAP3K14, NFKB1, NFKBIA, RELA, RIPK1, SPTAN1, TNFRSF10A, TNFRSF10B, TNFRSF25, TNFSF10, TNFSF12, TRADD, TRAF2 31 APAF1(7), BCL2(1), BID(1), BIRC2(2), BIRC3(2), CASP10(2), CASP3(1), CASP6(1), CASP7(1), CASP9(2), CFLAR(2), CHUK(4), DFFA(2), DFFB(2), GAS2(2), MAP3K14(2), NFKB1(3), RELA(2), RIPK1(2), SPTAN1(9), TNFRSF10A(3), TNFRSF10B(2), TNFSF10(1), TNFSF12(2), TRADD(1), TRAF2(1) 7614772 60 31 60 27 22 15 0 18 4 1 0.95 1.00 556 HSA00562_INOSITOL_PHOSPHATE_METABOLISM Genes involved in inositol phosphate metabolism CARKL, FN3K, IMPA1, IMPA2, INPP1, INPP4A, INPP4B, INPP5A, INPP5B, INPP5E, INPPL1, IPMK, ISYNA1, ITGB1BP3, ITPK1, ITPKA, ITPKB, MINPP1, MIOX, OCRL, PI4KA, PI4KB, PIB5PA, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIP4K2A, PIP4K2B, PIP4K2C, PIP5K1A, PIP5K1B, PIP5K1C, PIP5K3, PLCB1, PLCB2, PLCB3, PLCB4, PLCD1, PLCD3, PLCD4, PLCE1, PLCG1, PLCG2, PLCZ1, PTEN, PTPMT1, SKIP, SYNJ1, SYNJ2 45 IMPA1(2), IMPA2(2), INPP1(2), INPP4A(2), INPP4B(5), INPP5A(2), INPP5B(1), INPPL1(3), IPMK(2), ITGB1BP3(1), ITPK1(2), ITPKB(4), MIOX(1), OCRL(5), PI4KA(11), PI4KB(2), PIK3C3(5), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIP4K2A(2), PIP4K2B(2), PIP4K2C(3), PIP5K1A(3), PIP5K1B(1), PIP5K1C(3), PLCB1(8), PLCB2(3), PLCB3(3), PLCB4(9), PLCD1(6), PLCD3(2), PLCD4(2), PLCE1(7), PLCG1(4), PLCG2(9), PLCZ1(3), PTPMT1(2), SYNJ1(8), SYNJ2(5) 16752261 153 50 150 38 67 33 6 30 16 1 0.95 1.00 557 NOTCHPATHWAY Proteolysis and Signaling Pathway of Notch ADAM17, DLL1, FURIN, NOTCH1, PSEN1, RBPSUH 5 ADAM17(6), DLL1(1), FURIN(2), PSEN1(3) 2019165 12 10 12 2 5 4 0 0 3 0 0.95 1.00 558 HSA04910_INSULIN_SIGNALING_PATHWAY Genes involved in insulin signaling pathway ACACA, ACACB, AKT1, AKT2, AKT3, ARAF, BAD, BRAF, CALM1, CALM2, CALM3, CALML3, CALML6, CBL, CBLB, CBLC, CRK, CRKL, EIF4EBP1, ELK1, EXOC7, FASN, FBP1, FBP2, FLOT1, FLOT2, FOXO1, FRAP1, G6PC, G6PC2, GCK, GRB2, GSK3B, GYS1, GYS2, HRAS, IKBKB, INPP5D, INS, INSR, IRS1, IRS2, IRS4, KIAA1303, KRAS, LIPE, MAP2K1, MAP2K2, MAPK1, MAPK10, MAPK3, MAPK8, MAPK9, MKNK1, MKNK2, NRAS, PCK1, PCK2, PDE3A, PDE3B, PDPK1, PFKL, PFKM, PFKP, PHKA1, PHKA2, PHKB, PHKG1, PHKG2, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PKLR, PKM2, PPARGC1A, PPP1CA, PPP1CB, PPP1CC, PPP1R3A, PPP1R3B, PPP1R3C, PPP1R3D, PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKACA, PRKACB, PRKACG, PRKAG1, PRKAG2, PRKAG3, PRKAR1A, PRKAR1B, PRKAR2A, PRKAR2B, PRKCI, PRKCZ, PRKX, PRKY, PTPN1, PTPRF, PYGB, PYGL, PYGM, RAF1, RAPGEF1, RHEB, RHOQ, RPS6, RPS6KB1, RPS6KB2, SH2B2, SHC1, SHC2, SHC3, SHC4, SKIP, SLC2A4, SOCS1, SOCS2, SOCS3, SOCS4, SORBS1, SOS1, SOS2, SREBF1, TRIP10, TSC1, TSC2 127 ACACA(14), ACACB(14), AKT1(2), AKT2(5), ARAF(3), BAD(1), CBL(2), CBLB(6), CRKL(2), EXOC7(1), FASN(1), FBP2(2), FLOT1(3), FOXO1(1), G6PC(3), GCK(1), GRB2(2), GSK3B(7), GYS1(1), GYS2(8), IKBKB(2), INPP5D(2), INSR(5), IRS1(5), IRS4(11), LIPE(3), MAP2K1(3), MAPK1(2), MAPK10(4), MAPK3(2), MAPK8(2), MAPK9(3), MKNK1(1), MKNK2(2), PCK2(3), PDE3A(5), PDE3B(2), PDPK1(1), PFKL(1), PFKM(1), PFKP(2), PHKA1(4), PHKA2(5), PHKB(4), PHKG2(2), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PKM2(2), PPARGC1A(5), PPP1CB(1), PPP1CC(1), PPP1R3A(8), PPP1R3B(1), PPP1R3C(2), PPP1R3D(1), PRKAA1(2), PRKAA2(6), PRKAB1(1), PRKAB2(1), PRKACB(1), PRKACG(2), PRKAG1(1), PRKAG2(2), PRKAG3(4), PRKAR1A(1), PRKAR1B(1), PRKAR2B(2), PRKCI(4), PRKX(2), PTPN1(4), PTPRF(8), PYGB(4), PYGL(2), PYGM(2), RAF1(4), RAPGEF1(4), RPS6KB1(3), RPS6KB2(1), SHC1(3), SHC3(1), SHC4(5), SLC2A4(3), SOCS2(2), SORBS1(7), SOS1(5), SOS2(9), SREBF1(1), TSC1(3), TSC2(1) 36254532 302 75 298 119 105 71 8 87 31 0 0.96 1.00 559 ARGININECPATHWAY Related catabolic pathways process arginine, histidine, glutamine, and proline through glutamate to alpha-ketoglutamate, which feeds into the citric acid cycle. ALDH4A1, ARG1, GLS, GLUD1, OAT, PRODH 6 ALDH4A1(2), ARG1(1), GLUD1(2) 1266114 5 5 5 2 3 2 0 0 0 0 0.96 1.00 560 STRIATED_MUSCLE_CONTRACTION ACTA1, ACTA2, ACTC, ACTN2, ACTN3, ACTN4, C9orf97, DES, DES, FAM48A, DMD, MYBPC1, MYBPC2, MYBPC3, MYH3, MYH6, MYH6, MYH7, MYH8, MYL1, MYL2, MYL3, MYL4, MYL9, MYOM1, NEB, TCAP, TMOD1, TNNC2, TNNI1, TNNI2, TNNI3, TNNT1, TNNT2, TNNT3, TPM1, TPM2, TPM3, TPM4, TPM4, TTN, VIM 35 ACTA1(3), ACTA2(3), ACTN2(7), ACTN3(2), ACTN4(2), DES(1), FAM48A(4), MYBPC1(5), MYBPC2(4), MYBPC3(2), MYH3(9), MYH6(8), MYH7(7), MYH8(17), MYL1(1), MYL2(1), MYOM1(8), NEB(38), TMOD1(2), TNNC2(1), TNNI1(2), TNNI3(1), TNNT2(3), TPM1(2), TPM2(5), TPM3(2), TPM4(3), VIM(2) 13713748 145 46 139 51 62 28 1 42 12 0 0.96 1.00 561 ATRBRCAPATHWAY BRCA1 and 2 block cell cycle progression in response to DNA damage and promote double-stranded break repair; mutations induce breast cancer susceptibility. ATM, ATR, BRCA1, BRCA2, CHEK1, CHEK2, FANCA, FANCC, FANCD2, FANCE, FANCF, FANCG, HUS1, MRE11A, NBS1, RAD1, RAD17, RAD50, RAD51, RAD9A, TP53, TREX1 19 ATR(13), BRCA1(5), BRCA2(11), CHEK1(1), CHEK2(1), FANCA(5), FANCC(3), FANCD2(7), FANCF(1), FANCG(2), HUS1(1), MRE11A(3), RAD1(1), RAD17(2), RAD50(5), TREX1(2) 8647364 63 26 63 12 21 10 5 16 11 0 0.96 1.00 562 INTEGRIN_MEDIATED_CELL_ADHESION_KEGG AKT1, AKT3, BCAR1, CAPN1, CAPN10, CAPN11, CAPN2, CAPN3, CAPN5, CAPN6, CAPN7, CAPN9, CAPNS1, CAV1, CAV2, CAV3, CDC42, CRK, CSK, DKFZp434E1119, DOCK1, FLJ14825, FLJ40125, FYN, GIT2, GRB2, ILK, ITGA10, ITGA11, ITGA2, ITGA2B, ITGA3, ITGA4, ITGA5, ITGA6, ITGA7, ITGA8, ITGA9, ITGAD, ITGAE, ITGAL, ITGAM, ITGAV, ITGAX, ITGB1, ITGB2, ITGB3, ITGB4, ITGB5, ITGB6, ITGB7, ITGB8, LOC283874, PDPK1, MAP2K1, MAP2K2, MAP2K3, MAP2K6, MAPK10, MAPK12, MAPK4, MAPK6, MAPK7, MGC17301, MYLK2, PAK1, PAK2, PAK3, PAK4, PAK6, PDPK1, PIK3R2, PTK2, PXN, RAC1, RAC2, RAC3, RAP1B, RAPGEF1, RHO, ROCK1, ROCK2, SDCCAG8, SEPP1, SHC1, SHC3, SORBS1, SOS1, SRC, TLN1, TNS, TNS1, VASP, VAV2, VAV3, VCL, ZYX 90 AKT1(2), CAPN1(2), CAPN10(3), CAPN11(1), CAPN2(5), CAPN3(6), CAPN5(5), CAPN6(2), CAPN7(3), CAPN9(1), CAPNS1(1), CAV2(1), CAV3(2), CSK(1), DOCK1(5), FYN(4), GIT2(6), GRB2(2), ITGA10(3), ITGA11(2), ITGA2(5), ITGA2B(2), ITGA3(4), ITGA4(3), ITGA5(7), ITGA6(3), ITGA7(6), ITGA8(5), ITGA9(4), ITGAD(7), ITGAE(5), ITGAL(5), ITGAM(5), ITGAV(1), ITGAX(4), ITGB1(6), ITGB2(4), ITGB3(7), ITGB4(2), ITGB5(5), ITGB6(6), ITGB7(4), ITGB8(4), MAP2K1(3), MAP2K3(2), MAP2K6(2), MAPK10(4), MAPK12(2), MAPK4(1), MAPK6(2), MAPK7(3), MYLK2(2), PAK1(4), PAK2(2), PAK3(3), PAK6(1), PDPK1(1), PIK3R2(1), PTK2(5), RAP1B(2), RAPGEF1(4), RHO(2), ROCK1(8), ROCK2(2), SHC1(3), SHC3(1), SORBS1(7), SOS1(5), SRC(3), TLN1(5), TNS1(11), VASP(3), VAV2(2), VAV3(10), VCL(1) 31804885 268 71 264 105 97 50 7 83 31 0 0.96 1.00 563 G1_TO_S_CELL_CYCLE_REACTOME ATM, CCNA1, CCNB1, CCND1, CCND2, CCND3, CCNE1, CCNE2, CCNG2, CCNH, CDC25A, CDC45L, CDK2, CDK4, CDK7, CDKN1A, CDKN1B, CDKN1C, CDKN2A, CDKN2B, CDKN2C, CDKN2D, CREB3, CREB3L1, CREB3L3, CREB3L4, CREBL1, CREBL1, TNXB, E2F1, E2F2, E2F3, E2F4, E2F5, E2F6, FLJ14001, GADD45A, GBA2, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, MDM2, MNAT1, MYC, MYT1, NACA, NACA, FKSG17, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, POLA2, POLE, POLE2, PRIM1, PRIM2A, RB1, RBL1, RPA1, RPA2, RPA3, TFDP1, TFDP2, TP53, WEE1 62 CCNA1(4), CCNB1(2), CCND2(1), CCND3(1), CCNE1(3), CCNE2(1), CCNH(2), CDC25A(2), CDK2(2), CDK4(2), CDK7(1), CDKN1A(1), CDKN1B(1), CDKN2A(1), CDKN2C(1), CREB3(2), CREB3L1(3), CREB3L3(1), CREB3L4(1), E2F2(1), E2F3(1), E2F4(1), E2F5(2), GBA2(5), MCM3(1), MCM4(4), MCM5(3), MCM6(3), MCM7(2), MDM2(4), MNAT1(1), MYT1(8), NACA(5), ORC1L(1), ORC3L(1), ORC4L(1), ORC5L(1), PCNA(2), POLA2(2), POLE(17), RB1(4), RBL1(3), RPA1(2), RPA2(1), TFDP1(4), TFDP2(1), TNXB(14), WEE1(3) 16013447 130 45 129 29 38 32 1 44 14 1 0.96 1.00 564 ST_GA13_PATHWAY G-alpha-13 influences the actin cytoskeleton and activates protein kinase D, PI3K, and Pyk2. AKT1, AKT2, AKT3, ARHGEF11, BCL2, BF, CDC42, DLG4, GNA13, IKBKG, LPA, MAP2K4, MAP3K1, MAP3K5, MAPK8, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, PDK1, PHKA2, PI3, PIK3CB, PLD1, PLD2, PLD3, PRKCM, PTK2, RDX, ROCK1, ROCK2, SERPINA4, SRF, TBXA2R 33 AKT1(2), AKT2(5), ARHGEF11(9), BCL2(1), DLG4(2), GNA13(2), LPA(9), MAP3K1(6), MAP3K5(5), MAPK8(2), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), PHKA2(5), PIK3CB(2), PLD1(8), PLD2(1), PLD3(5), PTK2(5), RDX(2), ROCK1(8), ROCK2(2), SERPINA4(2), SRF(3) 11223545 94 39 94 34 40 17 1 25 11 0 0.96 1.00 565 HSA00030_PENTOSE_PHOSPHATE_PATHWAY Genes involved in pentose phosphate pathway ALDOA, ALDOB, ALDOC, DERA, FBP1, FBP2, G6PD, GPI, H6PD, PFKL, PFKM, PFKP, PGD, PGLS, PGM1, PGM3, PRPS1, PRPS1L1, PRPS2, RBKS, RPE, RPIA, TALDO1, TKT, TKTL1, TKTL2 26 ALDOA(1), ALDOB(5), ALDOC(1), DERA(1), FBP2(2), G6PD(2), GPI(1), H6PD(3), PFKL(1), PFKM(1), PFKP(2), PGD(1), PGM1(2), PGM3(4), PRPS1L1(1), PRPS2(2), RPE(2), RPIA(3), TALDO1(3), TKT(3), TKTL1(4), TKTL2(5) 5674309 50 28 50 16 20 12 0 16 2 0 0.96 1.00 566 HSA00072_SYNTHESIS_AND_DEGRADATION_OF_KETONE_BODIES Genes involved in synthesis and degradation of ketone bodies ACAT1, ACAT2, BDH1, BDH2, HMGCL, HMGCS1, HMGCS2, OXCT1, OXCT2 9 ACAT1(1), ACAT2(2), BDH1(1), HMGCS1(1), OXCT1(3), OXCT2(1) 1696323 9 8 9 3 4 1 0 4 0 0 0.96 1.00 567 MRNA_PROCESSING_REACTOME BRUNOL4, C10orf9, C20orf14, CD2BP2, CDC40, CLK2, CLK3, CLK4, COL2A1, CPSF1, CPSF2, CPSF3, CPSF4, CSTF1, CSTF2, CSTF2T, CSTF3, CUGBP1, CUGBP2, DDIT3, DDX1, DDX20, DHX15, DHX16, DHX38, DHX8, DHX9, DICER1, DNAJC8, FLJ10748, FNBP3, FUS, FUSIP1, GIPC1, HEAB, HNRPA2B1, HNRPA3, HNRPA3P1, HNRPA3, LOC387933, HNRPA3P1, HNRPA3, LOC389395, HNRPAB, HNRPC, HNRPC, HNRPCL1, LOC390615, LOC440563, HNRPD, HNRPH1, HNRPH2, HNRPL, HNRPR, HNRPU, HRMT1L2, LSM2, LSM7, METTL3, NCBP1, NCBP2, NONO, NUDT21, NXF1, PABPN1, PAPOLA, PHF5A, POLR2A, PPM1G, PRPF18, PRPF3, PRPF4, PRPF4B, PRPF8, PSKH1, PTBP1, PTBP2, RBM17, RBM5, RNGTT, RNMT, RNPC2, RNPS1, SF3A1, SF3A2, SF3A3, SF3B1, SF3B2, SF3B4, SF3B5, SF4, SFRS10, SFRS12, SFRS14, SFRS16, SFRS2, SFRS4, SFRS5, SFRS6, SFRS7, SFRS8, SFRS9, SMC1L1, SNRP70, SNRPA, SNRPA1, SNRPB, SNRPB2, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, SNRPN, SNRPN, PAR1, SNRPN, SNURF, SPOP, SRPK1, SRPK2, SRRM1, SUPT5H, TMP21, TXNL4A, U2AF1, U2AF2, WDR57, XRN2 91 CD2BP2(4), CDC40(3), CLK3(2), CLK4(2), COL2A1(8), CPSF1(4), CPSF2(1), CPSF3(1), CPSF4(3), CSTF1(1), CSTF2T(5), CSTF3(2), DDX1(4), DDX20(3), DHX15(1), DHX16(6), DHX38(10), DHX8(6), DHX9(4), DICER1(7), DNAJC8(2), METTL3(3), NCBP1(4), NCBP2(1), NONO(1), NUDT21(1), NXF1(5), PABPN1(1), PAPOLA(2), PHF5A(1), POLR2A(6), PPM1G(1), PRPF18(3), PRPF3(1), PRPF4(4), PRPF4B(3), PRPF8(9), PSKH1(1), PTBP1(1), PTBP2(3), RBM17(2), RBM5(1), RNGTT(6), RNMT(3), SF3A1(2), SF3A2(1), SF3A3(1), SF3B1(9), SF3B2(2), SF3B4(4), SFRS14(2), SFRS4(2), SNRPB2(1), SNRPE(2), SNRPN(2), SNURF(1), SPOP(2), SRPK1(7), SRPK2(2), SRRM1(8), SUPT5H(10), TXNL4A(1), U2AF1(1), U2AF2(2), XRN2(6) 24558573 210 63 210 60 69 53 3 51 34 0 0.97 1.00 568 HSA00920_SULFUR_METABOLISM Genes involved in sulfur metabolism BPNT1, CHST11, CHST12, CHST13, PAPSS1, PAPSS2, SULT1A1, SULT1A2, SULT1A3, SULT1A4, SULT1E1, SULT2A1, SULT2B1, SUOX 12 BPNT1(1), CHST11(2), CHST12(2), CHST13(1), PAPSS1(1), PAPSS2(2), SULT1A1(2), SULT1A2(1), SULT1E1(1), SULT2A1(1), SULT2B1(1), SUOX(2) 2146299 17 11 17 3 9 2 0 3 3 0 0.97 1.00 569 RIBOSOMAL_PROTEINS ANK2, APG10L, RPS23, B3GALT4, CDR1, DGKI, FAU, IL6ST, KIAA1394, LOC133957, MRPL19, NET_5, PIGK, RPL10, RPL11, RPL12, RPL13, RPL13, LOC388344, RPL13A, RPL13A, LOC283340, LOC387930, RPL14, RPL14, RPL14L, RPL15, RPL15, LOC136321, LOC402694, RPL17, RPL17, dJ612B15.1, RPL18, RPL18A, LOC285053, LOC347544, LOC390354, RPL18A, LOC390354, RPL19, RPL21, RPL21, LOC387753, LOC388143, LOC388532, LOC388621, LOC389156, LOC390488, LOC402336, LOC440487, LOC440575, RPL21, LOC387753, LOC388143, LOC388532, LOC388621, LOC389156, LOC390488, LOC440487, LOC440575, RPL22, RPL23, RPL24, RPL24, SLC36A2, RPL26, LOC391126, LOC392501, LOC400055, LOC441073, LOC441533, RPL27, RPL27A, RPL27A, LOC389435, RPL28, RPL29, RPL29, LOC283412, LOC284064, LOC389655, LOC391738, LOC401911, RPL3, RPL30, RPL31, RPL32, RPL34, LOC342994, RPL35, RPL35A, RPL36, RPL37, RPL38, RPL39, RPL3L, RPL4, RPL41, RPL5, RPL5, LOC388907, RPL5, RNU66, LOC388907, RPL6, RPL7, RPL7, LOC389305, RPL7, LOC90193, LOC388401, LOC389305, LOC392550, LOC439954, RPL7A, RPL7A, LOC133748, LOC388474, RPL7A, RNU36B, LOC133748, LOC388474, RPL8, RPL9, RPLP0, RPLP0, RPLP0_like, RPLP1, RPLP2, RPS10, RPS10, LOC158104, LOC388885, LOC389127, LOC390842, LOC401817, RPS10, LOC388885, RPS11, RPS12, RPS13, RPS14, RPS15, RPS16, RPS16, LOC441876, RPS17, RPS17, LOC402057, RPS18, RPS19, RPS2, RPS2, LOC91561, LOC148430, LOC286444, LOC400963, LOC440589, RPS20, RPS21, RPS23, RPS24, RPS25, RPS26, RPS26L, LOC440440, RPS27, RPS27A, RPS27A, LOC388720, LOC389425, RPS28, RPS29, RPS3, RPS3A, RPS3A, LOC146053, LOC400652, LOC401016, LOC439992, RPS4X, RPS4Y1, RPS5, RPS6, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6, RPS6KB1, RPS6KB2, RPS7, RPS8, RPS9, RPSA, LOC388524, LOC388654, SCDR10, TBC1D10C, TSPAN9, UBA52, UBB, UBC 92 B3GALT4(1), CDR1(1), DGKI(6), IL6ST(2), MRPL19(1), PIGK(3), RPL18A(1), RPL21(1), RPL22(2), RPL24(1), RPL28(1), RPL3(2), RPL31(2), RPL32(1), RPL35(1), RPL39(1), RPL3L(1), RPL4(2), RPL6(1), RPL7(1), RPL9(3), RPLP0(2), RPS11(1), RPS13(1), RPS16(1), RPS18(1), RPS20(1), RPS23(4), RPS3(1), RPS4X(1), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KA6(5), RPS6KB1(3), RPS6KB2(1), RPS9(2), RPSA(1), SLC36A2(1), TBC1D10C(2), TSPAN9(2), UBA52(2), UBB(1) 10396083 80 36 79 22 30 15 0 20 15 0 0.97 1.00 570 STRESSPATHWAY Tumor necrosis factor receptor TNFR1 promotes apoptosis and activates the pro-inflammatory NF-kB, while TNFR2 activates stress-activated protein kinases (SAPKs). ATF1, CASP2, CHUK, CRADD, IKBKB, IKBKG, JUN, LTA, MAP2K3, MAP2K4, MAP2K6, MAP3K1, MAP3K14, MAP4K2, MAPK14, MAPK8, NFKB1, NFKBIA, RELA, RIPK1, TANK, TNF, TNFRSF1A, TRADD, TRAF2 23 ATF1(1), CASP2(4), CHUK(4), CRADD(1), IKBKB(2), MAP2K3(2), MAP2K6(2), MAP3K1(6), MAP3K14(2), MAPK14(3), MAPK8(2), NFKB1(3), RELA(2), RIPK1(2), TANK(3), TNFRSF1A(1), TRADD(1), TRAF2(1) 5527149 42 22 42 18 18 11 4 6 3 0 0.97 1.00 571 ARENRF2PATHWAY Nrf1 and nrf2 are transcription factors that bind to antioxidant response elements (AREs), promoters of genes involved in oxidative damage control. CREB1, FOS, FXYD2, JUN, KEAP1, MAFF, MAFG, MAFK, MAPK1, MAPK14, MAPK8, NFE2L2, PRKCA, PRKCB1 12 CREB1(1), KEAP1(3), MAPK1(2), MAPK14(3), MAPK8(2), NFE2L2(1), PRKCA(2) 2019319 14 9 14 3 2 5 0 7 0 0 0.97 1.00 572 HSA00500_STARCH_AND_SUCROSE_METABOLISM Genes involved in starch and sucrose metabolism AGL, AMY1A, AMY1B, AMY1C, AMY2A, AMY2B, ASCC3, ASCC3L1, ATP13A2, DDX18, DDX19A, DDX23, DDX4, DDX41, DDX47, DDX50, DDX51, DDX52, DDX54, DDX55, DDX56, DHX58, ENPP1, ENPP3, ENTPD7, EP400, ERCC2, ERCC3, G6PC, G6PC2, GAA, GANC, GBA, GBA3, GBE1, GCK, GPI, GUSB, GYS1, GYS2, HK1, HK2, HK3, IFIH1, LYZL1, MGAM, MOV10L1, NUDT5, NUDT8, PGM1, PGM3, PYGB, PYGL, PYGM, RAD54B, RAD54L, RUVBL2, SETX, SI, SKIV2L2, SMARCA2, SMARCA5, TREH, UGDH, UGP2, UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT2A1, UGT2A3, UGT2B10, UGT2B11, UGT2B15, UGT2B17, UGT2B28, UGT2B4, UGT2B7, UXS1 80 AGL(8), AMY2A(3), ASCC3(14), ATP13A2(3), DDX18(2), DDX19A(2), DDX23(4), DDX4(2), DDX41(2), DDX47(3), DDX50(2), DDX52(1), DDX54(5), DDX55(2), DDX56(3), DHX58(2), ENPP1(4), ENPP3(3), ENTPD7(4), EP400(18), ERCC2(4), ERCC3(6), G6PC(3), GANC(2), GBA3(3), GBE1(4), GCK(1), GPI(1), GUSB(2), GYS1(1), GYS2(8), HK1(6), HK2(3), HK3(4), IFIH1(5), MGAM(9), MOV10L1(6), PGM1(2), PGM3(4), PYGB(4), PYGL(2), PYGM(2), RAD54B(6), RAD54L(3), RUVBL2(1), SETX(11), SI(12), SKIV2L2(2), SMARCA2(8), SMARCA5(3), TREH(2), UGDH(3), UGP2(5), UGT1A1(1), UGT1A10(1), UGT1A3(2), UGT1A4(1), UGT1A5(3), UGT1A7(2), UGT1A9(5), UGT2A1(8), UGT2A3(5), UGT2B10(1), UGT2B11(4), UGT2B15(2), UGT2B17(4), UGT2B28(2), UGT2B4(2), UGT2B7(4), UXS1(6) 28691699 278 64 274 85 96 76 3 69 33 1 0.97 1.00 573 HSA04150_MTOR_SIGNALING_PATHWAY Genes involved in mTOR signaling pathway AKT1, AKT2, AKT3, BRAF, CAB39, DDIT4, EIF4B, EIF4EBP1, FIGF, FRAP1, GBL, HIF1A, IGF1, INS, KIAA1303, LYK5, MAPK1, MAPK3, PDPK1, PGF, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIK3R5, PRKAA1, PRKAA2, RHEB, RICTOR, RPS6, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA6, RPS6KB1, RPS6KB2, STK11, TSC1, TSC2, ULK1, ULK2, ULK3, VEGFA, VEGFB, VEGFC 42 AKT1(2), AKT2(5), EIF4B(1), HIF1A(1), IGF1(2), MAPK1(2), MAPK3(2), PDPK1(1), PGF(1), PIK3CB(2), PIK3CD(2), PIK3CG(12), PIK3R1(5), PIK3R2(1), PIK3R5(1), PRKAA1(2), PRKAA2(6), RICTOR(10), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KA6(5), RPS6KB1(3), RPS6KB2(1), TSC1(3), TSC2(1), ULK2(4), ULK3(3), VEGFA(2), VEGFB(2), VEGFC(3) 11502940 97 37 96 28 34 21 2 24 16 0 0.97 1.00 574 NFKBPATHWAY Inactive nuclear factor kB (NF-kB) is inhibited by the IkB family in the cytoplasm; active NF-kB is localized in the nucleus and regulates transcription of a variety of genes. CHUK, FADD, IKBKB, IKBKG, IL1A, IL1R1, IRAK1, MAP3K1, MAP3K14, MAP3K7, MAP3K7IP1, MYD88, NFKB1, NFKBIA, RELA, RIPK1, TLR4, TNF, TNFAIP3, TNFRSF1A, TNFRSF1B, TRADD, TRAF6 21 CHUK(4), IKBKB(2), IL1A(1), IL1R1(3), IRAK1(1), MAP3K1(6), MAP3K14(2), MAP3K7(2), MYD88(1), NFKB1(3), RELA(2), RIPK1(2), TLR4(7), TNFAIP3(2), TNFRSF1A(1), TRADD(1), TRAF6(4) 5695252 44 21 44 15 18 7 2 12 5 0 0.97 1.00 575 HSA00625_TETRACHLOROETHENE_DEGRADATION Genes involved in tetrachloroethene degradation AKR1B10, EPHX2, HSD3B7, RDH11, RDH12, RDH13, RDH14 7 EPHX2(1), HSD3B7(2), RDH12(2), RDH13(1) 1127558 6 5 6 3 3 1 0 2 0 0 0.97 1.00 576 TNFR2PATHWAY Tumor necrosis factor beta, produced by activated lymphocytes, binds to its receptor TNFR2 to induce activation in immune cells and apoptosis in many other cells. CHUK, DUSP1, IKBKAP, IKBKB, IKBKG, LTA, MAP3K1, MAP3K14, NFKB1, NFKBIA, RELA, RIPK1, TANK, TNFAIP3, TNFRSF1B, TRAF1, TRAF2, TRAF3 17 CHUK(4), DUSP1(2), IKBKAP(2), IKBKB(2), MAP3K1(6), MAP3K14(2), NFKB1(3), RELA(2), RIPK1(2), TANK(3), TNFAIP3(2), TRAF1(1), TRAF2(1), TRAF3(4) 5269976 36 21 36 13 19 6 0 7 4 0 0.97 1.00 577 HISTONE_METHYLTRANSFERASE Genes with HMT activity AOF2, KDM6A, ASH1L, ASH2L, C17orf79, CARM1, CTCFL, DOT1L, EED, EHMT1, EHMT2, EZH1, EZH2, FBXL10, FBXL11, FBXO11, HCFC1, HSF4, JMJD1A, JMJD1B, JMJD2A, JMJD2B, JMJD2C, JMJD2D, JMJD3, JMJD4, JMJD6, MEN1, MLL, MLL2, MLL3, MLL4, MLL5, NSD1, OGT, PAXIP1, PPP1CA, PPP1CB, PPP1CC, PRDM2, PRDM6, PRDM7, PRDM9, PRMT1, PRMT5, PRMT6, PRMT7, PRMT8, RBBP5, SATB1, SETD1A, SETD1B, SETD2, SETD7, SETD8, SETDB1, SETDB2, SETMAR, SMYD3, STK38, SUV39H1, SUV39H2, SUV420H1, SUV420H2, SUZ12, WHSC1, WHSC1L1 55 ASH1L(17), ASH2L(2), C17orf79(1), CARM1(2), CTCFL(7), DOT1L(3), EED(2), EHMT1(2), EHMT2(1), EZH1(4), EZH2(4), FBXO11(4), JMJD6(2), KDM6A(1), MEN1(1), MLL(15), MLL2(14), MLL3(10), MLL4(8), MLL5(11), NSD1(11), OGT(4), PAXIP1(5), PPP1CB(1), PPP1CC(1), PRDM2(13), PRDM7(1), PRDM9(13), PRMT1(1), PRMT5(1), PRMT6(1), PRMT7(2), PRMT8(3), RBBP5(2), SATB1(1), SETD1A(7), SETD2(10), SETD7(2), SETD8(2), SETDB1(7), SETDB2(1), SMYD3(2), STK38(1), SUV39H1(1), SUV39H2(2), SUV420H1(5), SUZ12(2), WHSC1(6), WHSC1L1(4) 28213005 223 59 220 73 89 42 2 60 28 2 0.97 1.00 578 HSA00511_N_GLYCAN_DEGRADATION Genes involved in N-glycan degradation AGA, FLJ21865, FUCA1, FUCA2, GLB1, HEXA, HEXB, LCT, MAN2B1, MAN2B2, MAN2C1, MANBA, NEU1, NEU2, NEU3, NEU4 15 AGA(3), FUCA1(1), GLB1(3), HEXB(1), LCT(15), MAN2B1(4), MAN2B2(1), MAN2C1(6), MANBA(6), NEU2(1), NEU3(1) 4726885 42 23 42 15 15 14 1 11 1 0 0.98 1.00 579 CIRCADIANPATHWAY A heterodimer composed of Bmal1 and Clock acts as a transcription factor for proteins that regulate circadian rhythms, such as Per and Cry. ARNTL, CLOCK, CRY1, CRY2, CSNK1E, PER1 6 ARNTL(7), CLOCK(5), CRY1(2), CRY2(1), PER1(1) 2005250 16 10 16 4 7 2 0 5 2 0 0.98 1.00 580 BIOSYNTHESIS_OF_STEROIDS DHCR7, FDFT1, FDPS, FDPS, LOC402397, HMGCR, IDI1, LSS, MVD, MVK, NQO1, NQO2, PMVK, SC5DL, SQLE, VKORC1 14 DHCR7(2), FDFT1(2), HMGCR(2), IDI1(1), LSS(1), MVK(1), NQO1(1), PMVK(1), SC5DL(1), SQLE(1) 2624257 13 12 13 6 7 4 0 1 1 0 0.98 1.00 581 HSA04530_TIGHT_JUNCTION Genes involved in tight junction ACTB, ACTG1, ACTN1, ACTN2, ACTN3, ACTN4, AKT1, AKT2, AKT3, AMOTL1, ASH1L, CASK, CDC42, CDK4, CGN, CLDN1, CLDN10, CLDN11, CLDN14, CLDN15, CLDN16, CLDN17, CLDN18, CLDN19, CLDN2, CLDN20, CLDN22, CLDN23, CLDN3, CLDN4, CLDN5, CLDN6, CLDN7, CLDN8, CLDN9, CRB3, CSDA, CSNK2A1, CSNK2A2, CSNK2B, CTNNA1, CTNNA2, CTNNA3, CTNNB1, CTTN, EPB41, EPB41L1, EPB41L2, EPB41L3, EXOC3, EXOC4, F11R, GNAI1, GNAI2, GNAI3, HCLS1, HRAS, IGSF5, INADL, JAM2, JAM3, KRAS, LLGL1, LLGL2, MAGI1, MAGI2, MAGI3, MLLT4, MPDZ, MPP5, MRAS, MRCL3, MRLC2, MYH1, MYH10, MYH11, MYH13, MYH14, MYH15, MYH2, MYH3, MYH4, MYH6, MYH7, MYH7B, MYH8, MYH9, MYL2, MYL5, MYL7, MYL8P, MYL9, MYLC2PL, MYLPF, NRAS, OCLN, PARD3, PARD6A, PARD6B, PARD6G, PPM1J, PPP2CA, PPP2CB, PPP2R1A, PPP2R1B, PPP2R2A, PPP2R2B, PPP2R2C, PPP2R3A, PPP2R3B, PPP2R4, PRKCA, PRKCB1, PRKCD, PRKCE, PRKCG, PRKCH, PRKCI, PRKCQ, PRKCZ, PTEN, RAB13, RAB3B, RHOA, RRAS, RRAS2, SPTAN1, SRC, SYMPK, TJAP1, TJP1, TJP2, TJP3, VAPA, YES1, ZAK 126 ACTB(2), ACTN1(3), ACTN2(7), ACTN3(2), ACTN4(2), AKT1(2), AKT2(5), AMOTL1(10), ASH1L(17), CASK(3), CDK4(2), CGN(6), CLDN10(2), CLDN11(1), CLDN15(1), CLDN16(4), CLDN17(5), CLDN18(2), CLDN19(1), CLDN6(2), CLDN7(2), CLDN8(3), CLDN9(1), CSDA(2), CSNK2A1(4), CSNK2A2(2), CSNK2B(2), CTNNA1(10), CTNNA2(10), CTNNA3(9), CTNNB1(8), EPB41(3), EPB41L1(8), EPB41L2(6), EPB41L3(15), EXOC4(4), F11R(1), GNAI1(3), HCLS1(7), IGSF5(6), INADL(3), JAM3(3), LLGL1(1), MAGI1(10), MAGI2(6), MAGI3(4), MLLT4(3), MPDZ(7), MPP5(3), MRAS(1), MYH1(8), MYH10(8), MYH11(22), MYH13(10), MYH14(9), MYH15(8), MYH2(9), MYH3(9), MYH4(11), MYH6(8), MYH7(7), MYH7B(4), MYH8(17), MYH9(9), MYL2(1), MYL7(1), OCLN(1), PARD3(5), PARD6G(1), PPP2CA(1), PPP2R1A(4), PPP2R1B(1), PPP2R2A(1), PPP2R2B(1), PPP2R2C(3), PPP2R3A(3), PRKCA(2), PRKCD(3), PRKCE(4), PRKCG(8), PRKCH(2), PRKCI(4), PRKCQ(4), RAB3B(1), RRAS2(1), SPTAN1(9), SRC(3), SYMPK(5), TJP1(5), TJP2(5), TJP3(1), YES1(1), ZAK(4) 45022873 450 83 444 144 199 93 9 105 42 2 0.98 1.00 582 PYRIMIDINE_METABOLISM AK3, AK3L1, AK3L1, AK3L2, CAD, CANT1, CDA, CMPK, CTPS, CTPS2, DCK, DCTD, DHODH, DPYD, DPYS, DTYMK, DUT, ECGF1, ENTPD1, ITPA, NME1, NME2, NP, NT5C, NT5E, NT5M, NUDT2, POLA, POLB, POLD1, POLD2, POLE, POLG, POLL, POLQ, POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT, POLS, RRM1, RRM2, TK1, TK2, TXNRD1, TYMS, UCK1, UCK2, UMPS, UNG, UPB1, UPP1 55 AK3(1), CAD(10), CDA(1), CTPS(3), CTPS2(4), DCK(1), DCTD(3), DHODH(3), DPYD(8), DPYS(6), ENTPD1(2), ITPA(2), NT5E(2), NT5M(1), POLB(1), POLD1(5), POLD2(1), POLE(17), POLG(4), POLQ(8), POLR1B(6), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLRMT(1), RRM1(1), RRM2(2), TK1(1), TXNRD1(2), TYMS(2), UCK2(1), UNG(1), UPB1(3) 13495031 118 42 116 30 36 34 3 36 9 0 0.98 1.00 583 NDKDYNAMINPATHWAY Endocytotic role of NDK, Phosphins and Dynamin AMPH, AP2A1, AP2M1, BIN1, CALM1, CALM2, CALM3, DNM1, EPN1, EPS15, NME1, NME2, PICALM, PPP3CA, PPP3CB, PPP3CC, SYNJ1, SYNJ2, SYT1 19 AMPH(7), AP2A1(2), AP2M1(4), BIN1(1), DNM1(8), EPN1(1), EPS15(4), PICALM(2), PPP3CA(1), PPP3CB(4), PPP3CC(3), SYNJ1(8), SYNJ2(5), SYT1(1) 5270868 51 22 49 22 14 11 1 13 12 0 0.98 1.00 584 GLYCOLYSIS_AND_GLUCONEOGENESIS Genes involved in glycolysis and gluconeogenesis ALDOA, ALDOB, ALDOC, DLAT, DLD, ENO1, ENO2, ENO3, FBP1, FBP2, G6PC, GAPDH, GAPDHS, GAPDS, GCK, GOT1, GOT2, GPI, HK1, HK2, HK3, LDHA, LDHAL6B, LDHB, LDHC, MDH1, MDH2, PC, PCK1, PDHA1, PDHA2, PDHB, PDHX, PFKL, PFKM, PFKP, PGAM1, PGAM2, PGK1, PGK2, PKLR, PKM2, TNFAIP1, TPI1 43 ALDOA(1), ALDOB(5), ALDOC(1), DLAT(2), ENO2(3), ENO3(3), FBP2(2), G6PC(3), GCK(1), GOT1(5), GOT2(1), GPI(1), HK1(6), HK2(3), HK3(4), LDHA(1), LDHAL6B(1), LDHB(1), LDHC(2), MDH1(1), MDH2(1), PC(3), PDHA1(4), PDHA2(6), PDHB(2), PDHX(2), PFKL(1), PFKM(1), PFKP(2), PGAM1(3), PGAM2(1), PGK1(3), PGK2(6), PKM2(2), TNFAIP1(3), TPI1(1) 9746416 88 36 87 30 38 17 1 25 7 0 0.98 1.00 585 TNFR1PATHWAY Tumor necrosis factor alpha binds to its receptor TNFR1 and induces caspase-dependent apoptosis. ADPRT, ARHGDIB, BAG4, CASP2, CASP3, CASP8, CRADD, DFFA, DFFB, FADD, JUN, LMNA, LMNB1, LMNB2, MADD, MAP2K4, MAP3K1, MAP3K7, MAPK8, PAK1, PAK2, PRKDC, RB1, RIPK1, SPTAN1, TNF, TNFRSF1A, TRADD, TRAF2 26 ARHGDIB(3), BAG4(2), CASP2(4), CASP3(1), CRADD(1), DFFA(2), DFFB(2), LMNB1(2), LMNB2(1), MADD(13), MAP3K1(6), MAP3K7(2), MAPK8(2), PAK1(4), PAK2(2), PRKDC(13), RB1(4), RIPK1(2), SPTAN1(9), TNFRSF1A(1), TRADD(1), TRAF2(1) 8885871 78 31 78 31 23 20 4 19 10 2 0.98 1.00 586 HSA03060_PROTEIN_EXPORT Genes involved in protein export OXA1L, SEC61A2, SRP19, SRP54, SRP68, SRP72, SRP9, SRPR 8 OXA1L(2), SEC61A2(1), SRP19(1), SRP54(1), SRP68(1), SRP72(3) 1750021 9 8 9 4 4 2 0 3 0 0 0.98 1.00 587 GLYCEROPHOSPHOLIPID_METABOLISM ACHE, AGPAT1, AGPAT2, AGPAT3, AGPAT4, AGPS, CDIPT, CDS1, CDS2, CHAT, CHKA, CHKB, CHKB, CPT1B, CLC, DGKA, DGKB, DGKD, DGKE, DGKG, DGKH, DGKQ, DGKZ, ETNK1, GNPAT, GPD1, GPD2, LCAT, LGALS13, LYPLA1, LYPLA2, LYPLA2, LYPLA2P1, LOC388499, LYPLA3, PAFAH1B1, PAFAH2, PCYT1A, PCYT1B, PEMT, PISD, PLA2G1B, PLA2G2A, PLA2G2E, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PLCB2, PLCG1, PLCG2, PPAP2A, PPAP2B, PPAP2C 49 AGPAT1(1), AGPAT3(3), AGPAT4(6), AGPS(2), CDS1(1), CDS2(4), CHAT(6), CHKA(2), CLC(2), CPT1B(5), DGKA(1), DGKB(7), DGKD(9), DGKE(1), DGKG(3), DGKH(5), DGKZ(2), ETNK1(2), GNPAT(1), GPD1(1), GPD2(3), LCAT(1), PAFAH1B1(3), PCYT1A(4), PCYT1B(5), PEMT(1), PLA2G1B(1), PLA2G4A(5), PLA2G6(2), PLCB2(3), PLCG1(4), PLCG2(9), PPAP2B(1) 11750349 106 40 104 41 40 25 1 29 11 0 0.98 1.00 588 RNAPATHWAY dsRNA-activated protein kinase phosphorylates elF2a, which generally inhibits translation, and activates NF-kB to provoke inflammation. CHUK, DNAJC3, EIF2S1, EIF2S2, MAP3K14, NFKB1, NFKBIA, PRKR, RELA, TP53 8 CHUK(4), DNAJC3(1), EIF2S2(1), MAP3K14(2), NFKB1(3), RELA(2) 2180323 13 7 13 5 8 2 0 1 2 0 0.99 1.00 589 HSA00100_BIOSYNTHESIS_OF_STEROIDS Genes involved in biosynthesis of steroids CYP27B1, CYP51A1, DHCR24, DHCR7, EBP, FDFT1, FDPS, GGCX, GGPS1, HMGCR, HSD17B7, IDI1, IDI2, LSS, MVD, MVK, NQO1, NSDHL, PMVK, SC4MOL, SC5DL, SQLE, TM7SF2, VKORC1 24 CYP27B1(3), CYP51A1(3), DHCR24(2), DHCR7(2), EBP(2), FDFT1(2), GGCX(2), HMGCR(2), IDI1(1), IDI2(1), LSS(1), MVK(1), NQO1(1), NSDHL(2), PMVK(1), SC5DL(1), SQLE(1) 4550059 28 19 28 9 10 7 1 6 4 0 0.99 1.00 590 HSA01032_GLYCAN_STRUCTURES_DEGRADATION Genes involved in degradation of glycan structures AGA, ARSB, FLJ21865, FUCA1, FUCA2, GALNS, GBA, GLB1, GNS, GUSB, HEXA, HEXB, HGSNAT, HPSE, HPSE2, HYAL1, HYAL2, IDS, IDUA, LCT, MAN2B1, MAN2B2, MAN2C1, MANBA, NAGLU, NEU1, NEU2, NEU3, NEU4, SPAM1 29 AGA(3), ARSB(5), FUCA1(1), GALNS(4), GLB1(3), GNS(1), GUSB(2), HEXB(1), HGSNAT(6), HPSE(2), HPSE2(9), IDS(2), IDUA(1), LCT(15), MAN2B1(4), MAN2B2(1), MAN2C1(6), MANBA(6), NAGLU(3), NEU2(1), NEU3(1), SPAM1(1) 8089816 78 31 77 26 27 18 2 23 8 0 0.99 1.00 591 ARGININE_AND_PROLINE_METABOLISM ABP1, AGMAT, ALDH1A1, ALDH1A2, ALDH1A3, ALDH1B1, ALDH2, ALDH3A1, ALDH3A2, ALDH4A1, ALDH9A1, AMD1, AOC2, AOC3, ARG1, ARG2, ASL, ASS, CKB, CKM, CKMT1, CKMT1B, CKMT1A, CKMT2, CPS1, DAO, GAMT, GATM, GLUD1, GOT1, GOT2, MAOA, MAOB, NOS1, NOS2A, NOS3, OAT, ODC1, OTC, P4HA1, P4HA2, P4HA3, P4HB, PYCR1, RARS, SAT, SMS 43 ABP1(1), ALDH1A1(3), ALDH1A2(6), ALDH1A3(4), ALDH1B1(5), ALDH2(3), ALDH3A1(2), ALDH3A2(4), ALDH4A1(2), ALDH9A1(1), AOC2(4), AOC3(4), ARG1(1), ARG2(4), CKM(4), CKMT1B(1), CKMT2(2), CPS1(8), DAO(2), GAMT(1), GATM(1), GLUD1(2), GOT1(5), GOT2(1), MAOA(2), NOS1(5), NOS3(2), ODC1(2), OTC(4), P4HA2(2), P4HA3(1), P4HB(2), RARS(2), SMS(2) 10212148 95 35 95 32 36 27 0 22 10 0 0.99 1.00 592 DNA_REPLICATION_REACTOME ASK, CDC45L, CDC6, CDC7, CDK2, CDT1, DIAPH2, GMNN, MCM10, MCM2, MCM3, MCM4, MCM5, MCM6, MCM7, NACA, NACA, FKSG17, ORC1L, ORC2L, ORC3L, ORC4L, ORC5L, ORC6L, PCNA, POLA, POLA2, POLD1, POLD2, POLD3, POLD4, POLE, POLE2, PRIM1, PRIM2A, RFC1, RFC2, RFC3, RFC4, RFC5, RPA1, RPA2, RPA3, RPA4, RPS27A, RPS27A, LOC388720, LOC389425, UBA52, UBB, UBC 42 CDC7(2), CDK2(2), DIAPH2(9), GMNN(1), MCM10(6), MCM3(1), MCM4(4), MCM5(3), MCM6(3), MCM7(2), NACA(5), ORC1L(1), ORC3L(1), ORC4L(1), ORC5L(1), PCNA(2), POLA2(2), POLD1(5), POLD2(1), POLD3(2), POLE(17), RFC1(10), RFC4(3), RFC5(2), RPA1(2), RPA2(1), RPA4(2), UBA52(2), UBB(1) 11910185 94 37 93 21 22 23 0 36 13 0 0.99 1.00 593 ST_TUMOR_NECROSIS_FACTOR_PATHWAY Tumor necrosis factor is a pro-inflammatory cytokine that activates NF-kB and c-Jun. BAG4, BIRC2, BIRC3, CASP3, CASP8, CFLAR, FADD, HRB, IKBKG, JUN, MAP2K4, MAP3K3, MAP3K7, NFKB1, NFKB2, NFKBIA, NFKBIB, NFKBIE, NFKBIL1, NFKBIL2, NR2C2, RALBP1, RIPK1, TNF, TNFAIP3, TNFRSF1A, TNFRSF1B, TRADD, TRAF2 25 BAG4(2), BIRC2(2), BIRC3(2), CASP3(1), CFLAR(2), MAP3K3(2), MAP3K7(2), NFKB1(3), NFKB2(2), NFKBIB(1), NFKBIE(2), NR2C2(4), RALBP1(4), RIPK1(2), TNFAIP3(2), TNFRSF1A(1), TRADD(1), TRAF2(1) 5799866 36 22 36 10 12 10 1 12 1 0 0.99 1.00 594 TRANSLATION_FACTORS ANKHD1, ANKHD1, MASK_BP3, EEF1A2, EEF1B2, EEF1D, EEF1G, EEF2, EEF2K, EIF1AX, EIF1AY, EIF2AK1, EIF2AK2, EIF2AK3, EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5, EIF2S1, EIF2S2, EIF2S3, EIF3S1, EIF3S10, EIF3S2, EIF3S3, EIF3S4, EIF3S5, EIF3S6, EIF3S7, EIF3S8, EIF3S9, EIF4A1, EIF4A2, EIF4E, EIF4EBP1, EIF4EBP2, EIF4G1, EIF4G3, EIF5, EIF5A, EIF5B, ETF1, GSPT2, ITGB4BP, KIAA0664, PABPC1, PABPC3, PABPC1, LOC341315, PAIP1, PAIP1, LOC388345, SLC35A4, SUI1, WBSCR1 37 EEF1A2(1), EEF1G(1), EEF2(3), EIF2AK1(5), EIF2AK3(1), EIF2B1(2), EIF2B3(2), EIF2B5(5), EIF2S2(1), EIF2S3(1), EIF4A2(4), EIF4G1(8), EIF4G3(8), EIF5(3), EIF5A(1), EIF5B(4), ETF1(2), KIAA0664(4), PABPC1(3), PABPC3(4), PAIP1(1), SLC35A4(2) 10339502 66 34 65 19 21 15 2 18 10 0 0.99 1.00 595 GLYCINE_SERINE_AND_THREONINE_METABOLISM ABP1, AGXT, AGXT2, ALAS1, ALAS2, AMT, AOC2, AOC3, ATP6V0C, SHMT1, BHMT, CBS, CHDH, CHKA, CHKB, CHKB, CPT1B, CTH, DAO, DLD, DMGDH, GAMT, GARS, GATM, GCAT, GLDC, MAOA, MAOB, PEMT, PISD, PLCB2, PLCG1, PLCG2, PSPH, SARDH, SARS, SHMT1, SHMT2, TARS 37 ABP1(1), AGXT2(5), ALAS1(5), ALAS2(5), AOC2(4), AOC3(4), BHMT(3), CBS(2), CHDH(1), CHKA(2), CPT1B(5), CTH(1), DAO(2), DMGDH(5), GAMT(1), GARS(3), GATM(1), GLDC(2), MAOA(2), PEMT(1), PLCB2(3), PLCG1(4), PLCG2(9), SARDH(7), SARS(1), SHMT1(1), SHMT2(2), TARS(3) 9910774 85 36 84 30 38 22 0 14 11 0 0.99 1.00 596 RNA_POLYMERASE POLR1B, POLR2A, POLR2B, POLR2C, POLR2D, POLR2E, POLR2F, POLR2G, POLR2H, POLR2I, POLR2J, POLR2K, POLR2L, POLRMT 14 POLR1B(6), POLR2A(6), POLR2B(5), POLR2D(1), POLR2E(1), POLR2H(1), POLR2I(1), POLRMT(1) 3124602 22 12 22 3 7 8 1 5 1 0 0.99 1.00 597 HSA00052_GALACTOSE_METABOLISM Genes involved in galactose metabolism AKR1B1, AKR1B10, B4GALT1, B4GALT2, G6PC, G6PC2, GAA, GALE, GALK1, GALK2, GALT, GANC, GCK, GLA, GLB1, HK1, HK2, HK3, HSD3B7, LALBA, LCT, MGAM, PFKL, PFKM, PFKP, PGM1, PGM3, RDH11, RDH12, RDH13, RDH14, UGP2 32 AKR1B1(2), B4GALT1(5), B4GALT2(3), G6PC(3), GALE(1), GALK2(2), GALT(2), GANC(2), GCK(1), GLA(4), GLB1(3), HK1(6), HK2(3), HK3(4), HSD3B7(2), LCT(15), MGAM(9), PFKL(1), PFKM(1), PFKP(2), PGM1(2), PGM3(4), RDH12(2), RDH13(1), UGP2(5) 9030111 85 33 85 31 39 23 1 19 3 0 0.99 1.00 598 CHOLESTEROL_BIOSYNTHESIS C10orf110, CYP51A1, DHCR7, FDFT1, FDPS, FDPS, LOC402397, HMGCR, HMGCS1, IDI1, LSS, MVD, MVK, NSDHL, PMVK, SC4MOL, SC5DL, SQLE 15 CYP51A1(3), DHCR7(2), FDFT1(2), HMGCR(2), HMGCS1(1), IDI1(1), LSS(1), MVK(1), NSDHL(2), PMVK(1), SC5DL(1), SQLE(1) 3121680 18 13 18 7 8 5 0 3 2 0 0.99 1.00 599 ETSPATHWAY The Ets transcription factors are activated by Ras and promote macrophage differentiation. CSF1, CSF1R, DDX20, E2F1, E2F4, ETS1, ETS2, ETV3, FOS, HDAC2, HDAC5, HRAS, JUN, NCOR2, RBL1, RBL2, SIN3A, SIN3B 18 CSF1(1), CSF1R(3), DDX20(3), E2F4(1), ETS2(2), HDAC2(2), HDAC5(1), NCOR2(2), RBL1(3), RBL2(8), SIN3A(4), SIN3B(3) 6200937 33 20 33 18 10 6 0 9 8 0 0.99 1.00 600 STEROID_BIOSYNTHESIS CYP17A1, F13B, HSD17B1, HSD17B2, HSD17B3, HSD17B4, HSD17B7, HSD3B1, HSD3B2 9 CYP17A1(2), F13B(3), HSD17B2(1), HSD17B3(1), HSD17B4(3), HSD3B1(2) 1881426 12 8 12 2 4 4 0 3 1 0 0.99 1.00 601 HSA03010_RIBOSOME Genes involved in ribosome C15orf15, FAU, hCG_1644323, hCG_1984468, hCG_2041321, hCG_21078, hCG_26523, LOC283412, LOC284064, LOC284230, LOC284288, LOC284393, LOC285053, LOC342994, LOC347292, LOC388720, LOC389342, LOC390876, LOC391656, LOC400652, LOC402057, LOC439992, LOC440055, LOC440589, LOC440733, LOC440737, LOC441377, LOC441876, LOC441907, MRPL13, MRPS7, RPL10A, RPL10L, RPL11, RPL12, RPL13, RPL13A, RPL14, RPL18, RPL18A, RPL19, RPL21, RPL22L1, RPL23A, RPL23AP2, RPL24, RPL26, RPL27, RPL27A, RPL28, RPL29, RPL3, RPL30, RPL31, RPL32, RPL34, RPL35, RPL35A, RPL36A, RPL36AL, RPL37, RPL37A, RPL38, RPL39, RPL3L, RPL41, RPL6, RPL7, RPL8, RPL9, RPS10, RPS11, RPS12, RPS13, RPS15A, RPS16, RPS18, RPS2, RPS20, RPS21, RPS23, RPS24, RPS25, RPS26, RPS26P10, RPS27, RPS28, RPS29, RPS3, RPS3A, RPS4Y1, RPS5, RPS6, RPS7, RPS8, RPS9, RPSA, tcag7.23 67 RPL10A(1), RPL10L(2), RPL18A(1), RPL21(1), RPL22L1(1), RPL24(1), RPL28(1), RPL3(2), RPL31(2), RPL32(1), RPL35(1), RPL39(1), RPL3L(1), RPL6(1), RPL7(1), RPL9(3), RPS11(1), RPS13(1), RPS16(1), RPS18(1), RPS20(1), RPS23(4), RPS3(1), RPS9(2), RPSA(1) 5249413 34 21 34 10 14 7 0 10 3 0 0.99 1.00 602 HSA00532_CHONDROITIN_SULFATE_BIOSYNTHESIS Genes involved in chondroitin sulfate biosynthesis B3GALT6, B3GAT1, B3GAT2, B3GAT3, B4GALT7, ChGn, CHPF, CHST11, CHST12, CHST13, CHST14, CHST3, CHST7, CHSY-2, CHSY1, CSGlcA-T, DSE, GALNAC4S-6ST, GALNACT-2, UST, XYLT1, XYLT2 17 B3GAT1(1), CHPF(3), CHST11(2), CHST12(2), CHST13(1), CHST14(1), CHSY1(5), DSE(2), UST(1), XYLT1(4), XYLT2(2) 3336294 24 15 24 21 8 7 2 5 2 0 0.99 1.00 603 APOPTOSIS_GENMAPP APAF1, BAK1, BCL2L7P1, BAX, BCL2, BCL2L1, BID, BIRC2, BIRC3, BIRC4, CASP2, CASP3, CASP6, CASP7, CASP8, CASP9, CYCS, FADD, FAS, FASLG, GZMB, IKBKG, JUN, MAP2K4, MAP3K1, MAP3K14, MAPK10, MCL1, MDM2, MYC, NFKB1, NFKBIA, PARP1, PRF1, RELA, RIPK1, TNF, TNFRSF1A, TNFRSF1B, TNFSF10, TP53, TRADD, TRAF1, TRAF2 38 APAF1(7), BAK1(1), BAX(1), BCL2(1), BCL2L1(1), BID(1), BIRC2(2), BIRC3(2), CASP2(4), CASP3(1), CASP6(1), CASP7(1), CASP9(2), FASLG(1), GZMB(1), MAP3K1(6), MAP3K14(2), MAPK10(4), MDM2(4), NFKB1(3), PARP1(4), RELA(2), RIPK1(2), TNFRSF1A(1), TNFSF10(1), TRADD(1), TRAF1(1), TRAF2(1) 8097332 59 29 59 25 23 16 2 15 3 0 0.99 1.00 604 P38MAPKPATHWAY The Rho family GTPases activate the p38 MAPKs under environmental stress or in the presence of pro-inflammatory cytokines. ATF2, CDC42, CREB1, DAXX, DDIT3, ELK1, GRB2, HMGN1, HRAS, HSPB1, HSPB2, MAP2K4, MAP2K6, MAP3K1, MAP3K5, MAP3K7, MAP3K9, MAPK14, MAPKAPK2, MAPKAPK5, MAX, MEF2A, MEF2B, MEF2C, MEF2D, MKNK1, MYC, PDZGEF1, PLA2G4A, RAC1, RIPK1, RPS6KA5, SHC1, STAT1, TGFB1, TGFB2, TGFB3, TGFBR1, TRADD, TRAF2 38 CREB1(1), GRB2(2), HSPB2(1), MAP2K6(2), MAP3K1(6), MAP3K5(5), MAP3K7(2), MAP3K9(2), MAPK14(3), MAPKAPK2(3), MAPKAPK5(1), MAX(1), MEF2A(3), MEF2C(7), MEF2D(1), MKNK1(1), PLA2G4A(5), RIPK1(2), RPS6KA5(3), SHC1(3), STAT1(6), TGFB1(1), TGFB2(5), TGFBR1(6), TRADD(1), TRAF2(1) 8463910 74 27 72 25 29 19 2 16 8 0 0.99 1.00 605 HSA00051_FRUCTOSE_AND_MANNOSE_METABOLISM Genes involved in fructose and mannose metabolism AKR1B1, AKR1B10, ALDOA, ALDOB, ALDOC, FBP1, FBP2, FPGT, FUK, GMDS, GMPPA, GMPPB, HK1, HK2, HK3, HSD3B7, KHK, LHPP, MPI, MTMR1, MTMR2, MTMR6, PFKFB1, PFKFB2, PFKFB3, PFKFB4, PFKL, PFKM, PFKP, PGM2, PHPT1, PMM1, PMM2, RDH11, RDH12, RDH13, RDH14, SORD, TPI1, TSTA3, UGCGL1, UGCGL2 40 AKR1B1(2), ALDOA(1), ALDOB(5), ALDOC(1), FBP2(2), FPGT(3), FUK(1), GMDS(1), GMPPA(6), HK1(6), HK2(3), HK3(4), HSD3B7(2), KHK(1), LHPP(1), MPI(1), MTMR1(4), MTMR2(1), MTMR6(4), PFKFB1(6), PFKFB4(2), PFKL(1), PFKM(1), PFKP(2), PHPT1(1), PMM1(1), RDH12(2), RDH13(1), TPI1(1), TSTA3(1) 8767323 68 33 68 32 27 14 0 22 5 0 0.99 1.00 606 HSA00260_GLYCINE_SERINE_AND_THREONINE_METABOLISM Genes involved in glycine, serine and threonine metabolism ABP1, AGXT, AGXT2, AKR1B10, ALAS1, ALAS2, AMT, AOC2, AOC3, BHMT, CBS, CHDH, CHKA, CHKB, CTH, DAO, DLD, DMGDH, GAMT, GARS, GATM, GCAT, GLDC, GNMT, HSD3B7, MAOA, MAOB, PEMT, PHGDH, PIPOX, PISD, PSAT1, PSPH, RDH11, RDH12, RDH13, RDH14, SARDH, SARS, SARS2, SDS, SHMT1, SHMT2, TARS, TARS2 45 ABP1(1), AGXT2(5), ALAS1(5), ALAS2(5), AOC2(4), AOC3(4), BHMT(3), CBS(2), CHDH(1), CHKA(2), CTH(1), DAO(2), DMGDH(5), GAMT(1), GARS(3), GATM(1), GLDC(2), GNMT(1), HSD3B7(2), MAOA(2), PEMT(1), PHGDH(2), PIPOX(4), PSAT1(3), RDH12(2), RDH13(1), SARDH(7), SARS(1), SARS2(2), SDS(2), SHMT1(1), SHMT2(2), TARS(3), TARS2(4) 10095121 87 35 87 31 35 22 0 19 11 0 0.99 1.00 607 CIRCADIAN_EXERCISE ARNTL, AZIN1, BTG1, C10orf110, C1orf1, CBX3, CEBPB, CLDN5, CLOCK, CRY1, CRY2, DAZAP2, DAZAP2, LOC401029, DNAJA1, EIF4G2, ETV6, G0S2, GENX_3414, GFRA1, GSTM3, GSTP1, HERPUD1, HLA_DMA, HSPA8, IDI1, KLF9, MAP3K7IP2, MYF6, NCKAP1, NCOA4, NR1D2, OAZIN, PER1, PER2, PIGF, PPP1R3C, PPP2CB, PSMA4, PURA, SF3A3, SUMO3, TOB1, TUBB3, UCP3, UGP2, VAPA, ZFR 40 ARNTL(7), AZIN1(2), BTG1(1), CBX3(1), CLOCK(5), CRY1(2), CRY2(1), DNAJA1(1), EIF4G2(7), ETV6(4), GFRA1(3), GSTM3(2), HERPUD1(1), HSPA8(3), IDI1(1), MYF6(1), NCKAP1(8), NCOA4(3), NR1D2(3), PER1(1), PER2(2), PPP1R3C(2), PSMA4(2), SF3A3(1), SUMO3(1), TUBB3(1), UCP3(2), UGP2(5), ZFR(1) 8562389 74 29 72 17 33 14 3 16 8 0 0.99 1.00 608 MSPPATHWAY Macrophage stimulating protein is synthesized as pro-MSP by the liver and, on proteolysis, binds to monocyte receptor kinase RON to induce macrophage development. CCL2, CSF1, IL1B, MST1, MST1R, TNF 6 CSF1(1), MST1(1), MST1R(1) 1447393 3 3 3 1 1 1 0 1 0 0 0.99 1.00 609 HSA00790_FOLATE_BIOSYNTHESIS Genes involved in folate biosynthesis ALPI, ALPL, ALPP, ALPPL2, ASCC3, ASCC3L1, ATP13A2, DDX18, DDX19A, DDX23, DDX4, DDX41, DDX47, DDX50, DDX51, DDX52, DDX54, DDX55, DDX56, DHFR, DHX58, ENTPD7, EP400, ERCC2, ERCC3, FPGS, GCH1, GGH, IFIH1, MOV10L1, NUDT5, NUDT8, PTS, QDPR, RAD54B, RAD54L, RUVBL2, SETX, SKIV2L2, SMARCA2, SMARCA5, SPR 41 ALPI(2), ALPL(1), ALPP(1), ASCC3(14), ATP13A2(3), DDX18(2), DDX19A(2), DDX23(4), DDX4(2), DDX41(2), DDX47(3), DDX50(2), DDX52(1), DDX54(5), DDX55(2), DDX56(3), DHX58(2), ENTPD7(4), EP400(18), ERCC2(4), ERCC3(6), GGH(1), IFIH1(5), MOV10L1(6), RAD54B(6), RAD54L(3), RUVBL2(1), SETX(11), SKIV2L2(2), SMARCA2(8), SMARCA5(3) 14776341 129 40 126 38 54 35 3 24 12 1 1.00 1.00 610 MAPKPATHWAY The mitogen-activated protein (MAP) kinase pathway is a common signaling mechanism and has four main sub-pathways: Erk, JNK/SAPK, p53, and ERK5. ARAF1, ATF2, BRAF, CEBPA, CHUK, CREB1, DAXX, ELK1, FOS, GRB2, HRAS, IKBKB, JUN, MAP2K1, MAP2K2, MAP2K3, MAP2K4, MAP2K5, MAP2K6, MAP2K7, MAP3K1, MAP3K10, MAP3K11, MAP3K12, MAP3K13, MAP3K14, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K6, MAP3K7, MAP3K8, MAP3K9, MAP4K1, MAP4K2, MAP4K3, MAP4K4, MAP4K5, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK4, MAPK6, MAPK7, MAPK8, MAPK9, MAPKAPK2, MAPKAPK3, MAPKAPK5, MAX, MEF2A, MEF2B, MEF2C, MEF2D, MKNK1, MKNK2, MYC, NFKB1, NFKBIA, PAK1, PAK2, PDZGEF1, RAC1, RAF1, RELA, RIPK1, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KA5, RPS6KB1, RPS6KB2, SHC1, SP1, STAT1, TGFB1, TGFB2, TGFB3, TGFBR1, TRADD, TRAF2 82 CHUK(4), CREB1(1), GRB2(2), IKBKB(2), MAP2K1(3), MAP2K3(2), MAP2K5(2), MAP2K6(2), MAP3K1(6), MAP3K10(2), MAP3K11(4), MAP3K12(4), MAP3K13(8), MAP3K14(2), MAP3K2(2), MAP3K3(2), MAP3K4(15), MAP3K5(5), MAP3K6(6), MAP3K7(2), MAP3K8(2), MAP3K9(2), MAP4K1(2), MAP4K3(3), MAP4K4(5), MAP4K5(2), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK4(1), MAPK6(2), MAPK7(3), MAPK8(2), MAPK9(3), MAPKAPK2(3), MAPKAPK3(1), MAPKAPK5(1), MAX(1), MEF2A(3), MEF2C(7), MEF2D(1), MKNK1(1), MKNK2(2), NFKB1(3), PAK1(4), PAK2(2), RAF1(4), RELA(2), RIPK1(2), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KA5(3), RPS6KB1(3), RPS6KB2(1), SHC1(3), SP1(2), STAT1(6), TGFB1(1), TGFB2(5), TGFBR1(6), TRADD(1), TRAF2(1) 22207916 197 53 193 60 74 44 5 51 23 0 1.00 1.00 611 HSA04010_MAPK_SIGNALING_PATHWAY Genes involved in MAPK signaling pathway ACVR1B, ACVR1C, AKT1, AKT2, AKT3, ARRB1, ARRB2, ATF2, ATF4, BDNF, BRAF, CACNA1A, CACNA1B, CACNA1C, CACNA1D, CACNA1E, CACNA1F, CACNA1G, CACNA1H, CACNA1I, CACNA1S, CACNA2D1, CACNA2D2, CACNA2D3, CACNA2D4, CACNB1, CACNB2, CACNB3, CACNB4, CACNG1, CACNG2, CACNG3, CACNG4, CACNG5, CACNG6, CACNG7, CACNG8, CASP3, CD14, CDC25B, CDC42, CHP, CHUK, CRK, CRKL, DAXX, DDIT3, DUSP1, DUSP10, DUSP14, DUSP16, DUSP2, DUSP3, DUSP4, DUSP5, DUSP6, DUSP7, DUSP8, DUSP9, ECSIT, EGF, EGFR, ELK1, ELK4, EVI1, FAS, FASLG, FGF1, FGF10, FGF11, FGF12, FGF13, FGF14, FGF16, FGF17, FGF18, FGF19, FGF2, FGF20, FGF21, FGF22, FGF23, FGF3, FGF4, FGF5, FGF6, FGF7, FGF8, FGF9, FGFR1, FGFR2, FGFR3, FGFR4, FLNA, FLNB, FLNC, FOS, GADD45A, GADD45B, GADD45G, GNA12, GNG12, GRB2, HRAS, IKBKB, IKBKG, IL1A, IL1B, IL1R1, IL1R2, JUN, JUND, KRAS, LOC653852, MAP2K1, MAP2K1IP1, MAP2K2, MAP2K3, MAP2K4, MAP2K5, MAP2K6, MAP2K7, MAP3K1, MAP3K10, MAP3K12, MAP3K13, MAP3K14, MAP3K2, MAP3K3, MAP3K4, MAP3K5, MAP3K6, MAP3K7, MAP3K7IP1, MAP3K7IP2, MAP3K8, MAP4K1, MAP4K2, MAP4K3, MAP4K4, MAPK1, MAPK10, MAPK11, MAPK12, MAPK13, MAPK14, MAPK3, MAPK7, MAPK8, MAPK8IP1, MAPK8IP2, MAPK8IP3, MAPK9, MAPKAPK2, MAPKAPK3, MAPKAPK5, MAPT, MAX, MEF2C, MKNK1, MKNK2, MOS, MRAS, MYC, NF1, NFATC2, NFATC4, NFKB1, NFKB2, NGFB, NLK, NR4A1, NRAS, NTF3, NTF5, NTRK1, NTRK2, PAK1, PAK2, PDGFA, PDGFB, PDGFRA, PDGFRB, PLA2G10, PLA2G12A, PLA2G12B, PLA2G1B, PLA2G2A, PLA2G2D, PLA2G2E, PLA2G2F, PLA2G3, PLA2G4A, PLA2G5, PLA2G6, PPM1A, PPM1B, PPP3CA, PPP3CB, PPP3CC, PPP3R1, PPP3R2, PPP5C, PRKACA, PRKACB, PRKACG, PRKCA, PRKCB1, PRKCG, PRKX, PRKY, PTPN5, PTPN7, PTPRR, RAC1, RAC2, RAC3, RAF1, RAP1A, RAP1B, RAPGEF2, RASA1, RASA2, RASGRF1, RASGRF2, RASGRP1, RASGRP2, RASGRP3, RASGRP4, RPS6KA1, RPS6KA2, RPS6KA3, RPS6KA4, RPS6KA5, RPS6KA6, RRAS, RRAS2, SOS1, SOS2, SRF, STK3, STK4, STMN1, TAOK1, TAOK2, TAOK3, TGFB1, TGFB2, TGFB3, TGFBR1, TGFBR2, TNF, TNFRSF1A, TP53, TRAF2, TRAF6, ZAK 240 ACVR1C(2), AKT1(2), AKT2(5), ARRB1(1), BDNF(1), CACNA1A(8), CACNA1B(7), CACNA1C(10), CACNA1D(7), CACNA1E(15), CACNA1F(12), CACNA1G(10), CACNA1H(2), CACNA1I(3), CACNA1S(10), CACNA2D1(8), CACNA2D2(1), CACNA2D3(3), CACNA2D4(3), CACNB1(1), CACNB2(5), CACNB3(1), CACNG1(2), CACNG2(2), CACNG3(5), CACNG4(2), CACNG5(5), CACNG7(3), CACNG8(1), CASP3(1), CD14(1), CDC25B(5), CHUK(4), CRKL(2), DUSP1(2), DUSP10(4), DUSP16(3), DUSP3(1), DUSP4(1), DUSP5(1), DUSP6(4), DUSP7(1), DUSP9(1), ECSIT(2), EGF(3), EGFR(10), ELK4(1), FASLG(1), FGF1(2), FGF11(2), FGF12(2), FGF13(2), FGF14(5), FGF17(1), FGF20(1), FGF21(1), FGF23(1), FGF3(1), FGF5(2), FGF6(3), FGF7(1), FGF8(1), FGF9(1), FGFR1(3), FGFR2(1), FGFR3(2), FGFR4(2), FLNA(2), FLNB(14), FLNC(11), GNA12(2), GRB2(2), IKBKB(2), IL1A(1), IL1R1(3), IL1R2(3), MAP2K1(3), MAP2K3(2), MAP2K5(2), MAP2K6(2), MAP3K1(6), MAP3K10(2), MAP3K12(4), MAP3K13(8), MAP3K14(2), MAP3K2(2), MAP3K3(2), MAP3K4(15), MAP3K5(5), MAP3K6(6), MAP3K7(2), MAP3K8(2), MAP4K1(2), MAP4K3(3), MAP4K4(5), MAPK1(2), MAPK10(4), MAPK12(2), MAPK14(3), MAPK3(2), MAPK7(3), MAPK8(2), MAPK8IP1(2), MAPK8IP3(1), MAPK9(3), MAPKAPK2(3), MAPKAPK3(1), MAPKAPK5(1), MAPT(4), MAX(1), MEF2C(7), MKNK1(1), MKNK2(2), MOS(2), MRAS(1), NF1(5), NFATC2(3), NFATC4(4), NFKB1(3), NFKB2(2), NLK(1), NR4A1(2), NTF3(1), NTRK1(6), NTRK2(3), PAK1(4), PAK2(2), PDGFA(1), PDGFRA(13), PDGFRB(5), PLA2G1B(1), PLA2G2F(1), PLA2G4A(5), PLA2G6(2), PPM1A(7), PPM1B(1), PPP3CA(1), PPP3CB(4), PPP3CC(3), PPP3R1(1), PPP3R2(1), PPP5C(2), PRKACB(1), PRKACG(2), PRKCA(2), PRKCG(8), PRKX(2), PTPN5(1), PTPN7(1), PTPRR(1), RAF1(4), RAP1A(1), RAP1B(2), RAPGEF2(8), RASA1(5), RASA2(1), RASGRF1(9), RASGRF2(5), RASGRP1(2), RASGRP2(5), RASGRP3(4), RASGRP4(1), RPS6KA1(1), RPS6KA2(8), RPS6KA3(3), RPS6KA5(3), RPS6KA6(5), RRAS2(1), SOS1(5), SOS2(9), SRF(3), STK3(3), STK4(3), STMN1(1), TAOK1(5), TAOK2(2), TAOK3(4), TGFB1(1), TGFB2(5), TGFBR1(6), TNFRSF1A(1), TRAF2(1), TRAF6(4), ZAK(4) 66895252 608 96 599 229 253 127 12 151 63 2 1.00 1.00 612 FOLATE_BIOSYNTHESIS ALPI, ALPL, ALPP, ALPP, ALPPL2, ALPPL2, DHFR, FPGS, GCH1, GGH, SPR 9 ALPI(2), ALPL(1), ALPP(1), GGH(1) 1512153 5 5 5 1 2 1 1 1 0 0 1.00 1.00 613 ATMPATHWAY The tumor-suppressing protein kinase ATM responds to radiation-induced DNA damage by blocking cell-cycle progression and activating DNA repair. ABL1, ATM, BRCA1, CDKN1A, CHEK1, CHEK2, GADD45A, JUN, MAPK8, MDM2, MRE11A, NBS1, NFKB1, NFKBIA, RAD50, RAD51, RBBP8, RELA, TP53, TP73 17 ABL1(4), BRCA1(5), CDKN1A(1), CHEK1(1), CHEK2(1), MAPK8(2), MDM2(4), MRE11A(3), NFKB1(3), RAD50(5), RBBP8(2), RELA(2) 5274849 33 17 33 7 9 12 2 6 4 0 1.00 1.00 614 HIVNEFPATHWAY HIV-infected CD4 helper T cells may express Fas ligand, which binds to the Fas receptors of uninfected cells and induces apoptosis. ACTG1, ADPRT, APAF1, ARHGDIB, BAG4, BCL2, BID, BIRC2, BIRC3, BIRC4, CASP2, CASP3, CASP6, CASP7, CASP8, CASP9, CDC2L1, CDC2L2, CFLAR, CHUK, CRADD, CYCS, DAXX, DFFA, DFFB, FADD, GSN, LMNA, LMNB1, LMNB2, MAP2K7, MAP3K1, MAP3K14, MAP3K5, MAPK8, MDM2, NFKB1, NFKBIA, NUMA1, PAK2, PRKCD, PRKDC, PSEN1, PSEN2, PTK2, RASA1, RB1, RELA, RIPK1, SPTAN1, TNF, TNFRSF1A, TNFRSF1B, TNFRSF6, TNFSF6, TRADD, TRAF1, TRAF2 51 APAF1(7), ARHGDIB(3), BAG4(2), BCL2(1), BID(1), BIRC2(2), BIRC3(2), CASP2(4), CASP3(1), CASP6(1), CASP7(1), CASP9(2), CFLAR(2), CHUK(4), CRADD(1), DFFA(2), DFFB(2), LMNB1(2), LMNB2(1), MAP3K1(6), MAP3K14(2), MAP3K5(5), MAPK8(2), MDM2(4), NFKB1(3), NUMA1(8), PAK2(2), PRKCD(3), PRKDC(13), PSEN1(3), PSEN2(2), PTK2(5), RASA1(5), RB1(4), RELA(2), RIPK1(2), SPTAN1(9), TNFRSF1A(1), TRADD(1), TRAF1(1), TRAF2(1) 16121433 125 41 125 44 40 33 5 33 12 2 1.00 1.00 615 HSA00563_GLYCOSYLPHOSPHATIDYLINOSITOL_ANCHOR_BIOSYNTHESIS Genes involved in glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPAA1, GPLD1, PGAP1, PIGA, PIGB, PIGC, PIGF, PIGG, PIGH, PIGK, PIGL, PIGM, PIGN, PIGO, PIGP, PIGQ, PIGS, PIGT, PIGU, PIGV, PIGW, PIGX, PIGZ 23 GPAA1(3), GPLD1(4), PGAP1(6), PIGA(1), PIGB(1), PIGG(1), PIGK(3), PIGM(1), PIGN(1), PIGO(2), PIGQ(1), PIGS(2), PIGT(2), PIGW(1), PIGX(2) 5751188 31 18 31 13 10 6 1 9 5 0 1.00 1.00 616 HSA00627_1,4_DICHLOROBENZENE_DEGRADATION Genes involved in 1,4-dichlorobenzene degradation CMBL 1 117490 0 0 0 1 0 0 0 0 0 0 1.00 1.00