Clinical Features	Time to Death		AGE		PRIMARY.SITE.OF.DISEASE		GENDER		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	15 (3%)	560	0.85004	1	0.65828	1	1	1	0.61039	1	0.5033	1	0.90343	1	0.043859	1	0.81345	1	0.57783	1	1	1	0.70748	1
1q gain	80 (14%)	495	0.65611	1	0.83822	1	0.17375	1	0.14833	1	0.0623	1	0.20196	1	0.17633	1	0.32951	1	0.030507	1	1	1	1	1
2p gain	60 (10%)	515	0.32807	1	0.9237	1	0.36079	1	0.17298	1	0.043661	1	0.66593	1	0.30017	1	0.97584	1	0.15525	1	1	1	0.84585	1
2q gain	59 (10%)	516	0.38443	1	0.44765	1	0.16912	1	0.21723	1	0.031548	1	0.87071	1	0.36525	1	0.90023	1	0.16615	1	1	1	0.84404	1
3p gain	36 (6%)	539	0.032405	1	0.30955	1	0.019392	1	0.30149	1	0.054466	1	0.91912	1	0.60803	1	0.0017246	1	0.41989	1	0.44351	1	0.62521	1
3q gain	53 (9%)	522	0.00021761	0.182	0.64443	1	0.0088086	1	0.14796	1	0.01544	1	0.95208	1	0.02962	1	0.00028256	0.236	0.025008	1	0.19769	1	0.83717	1
4p gain	6 (1%)	569	0.42062	1	0.88477	1	0.053714	1	0.69066	1	0.19888	1	0.71789	1	0.32266	1	0.044615	1	0.1287	1	1	1	1	1
4q gain	7 (1%)	568	0.98267	1	0.75818	1	0.4044	1	1	1	0.55685	1	0.58077	1	0.113	1	0.17933	1	0.10052	1	1	1	1	1
5p gain	60 (10%)	515	0.95332	1	0.35566	1	0.36079	1	1	1	0.24189	1	0.90374	1	0.2134	1	0.77749	1	0.518	1	0.23969	1	0.55993	1
5q gain	33 (6%)	542	0.90322	1	0.86728	1	0.3162	1	0.59237	1	0.32728	1	0.81698	1	0.21905	1	0.41614	1	0.25367	1	1	1	0.44978	1
6p gain	77 (13%)	498	0.62447	1	0.47991	1	0.076934	1	1	1	0.056779	1	0.62802	1	0.0030128	1	0.75224	1	0.053646	1	0.10671	1	1	1
6q gain	71 (12%)	504	0.8748	1	0.87444	1	0.086624	1	0.89897	1	0.079517	1	0.89183	1	0.0086418	1	0.63069	1	0.029408	1	0.30736	1	0.47189	1
7p gain	290 (50%)	285	0.15745	1	0.63066	1	0.11255	1	1	1	1.7593e-05	0.0149	0.92265	1	0.00037843	0.315	0.047158	1	1.1151e-05	0.00946	0.50451	1	0.2848	1
7q gain	255 (44%)	320	0.21558	1	0.61507	1	0.15997	1	0.86637	1	0.00011215	0.0942	0.89826	1	0.0097155	1	0.021331	1	5.2982e-05	0.0446	0.51923	1	1	1
8p gain	108 (19%)	467	0.64047	1	0.51599	1	0.55123	1	0.83109	1	0.94521	1	0.46767	1	0.31606	1	0.83215	1	0.87245	1	1	1	0.54268	1
8q gain	235 (41%)	340	0.23152	1	0.12534	1	0.39471	1	0.39608	1	0.04104	1	0.20709	1	0.25305	1	0.28972	1	0.3705	1	0.74392	1	0.80845	1
9p gain	79 (14%)	496	0.2389	1	0.33941	1	0.001776	1	0.71672	1	0.010705	1	0.86971	1	0.31105	1	0.67397	1	0.30567	1	0.61859	1	0.035966	1
9q gain	64 (11%)	511	0.10565	1	0.19708	1	0.038591	1	0.23277	1	0.19367	1	0.37898	1	0.32127	1	0.70005	1	0.2053	1	0.60718	1	0.021162	1
10p gain	28 (5%)	547	0.042122	1	0.16455	1	1	1	0.25165	1	0.76776	1	0.10326	1	0.0054918	1	0.13987	1	0.19085	1	1	1	0.10029	1
10q gain	13 (2%)	562	0.43051	1	0.0097968	1	0.76178	1	0.39991	1	0.60326	1	0.29183	1	0.030918	1	0.49363	1	0.13704	1	1	1	0.0052651	1
11p gain	39 (7%)	536	0.45792	1	0.030978	1	0.00060653	0.503	0.18678	1	0.00032668	0.273	0.099338	1	0.37723	1	0.47925	1	0.32673	1	1	1	0.63556	1
11q gain	39 (7%)	536	0.41419	1	0.0027396	1	0.027159	1	1	1	0.012538	1	0.1907	1	0.47843	1	0.75072	1	0.094603	1	1	1	0.47833	1
12p gain	93 (16%)	482	0.65942	1	0.018908	1	0.80083	1	0.90971	1	0.95083	1	0.52785	1	0.0098522	1	0.40941	1	0.080993	1	0.6435	1	0.19641	1
12q gain	78 (14%)	497	0.83366	1	0.0042662	1	0.34382	1	0.39338	1	0.72885	1	0.67631	1	0.040896	1	0.44298	1	0.036002	1	0.61725	1	0.16722	1
13q gain	314 (55%)	261	0.28979	1	0.87421	1	0.019184	1	0.45004	1	3.9379e-09	3.36e-06	0.78782	1	0.0012329	1	0.18797	1	0.0025779	1	0.52116	1	0.47371	1
14q gain	19 (3%)	556	0.31262	1	0.9078	1	0.61026	1	1	1	0.75886	1	0.36598	1	0.46936	1	0.026644	1	0.44598	1	0.26256	1	0.040605	1
15q gain	7 (1%)	568	0.90997	1	0.40532	1	1	1	0.70982	1	0.2076	1	0.87216	1	0.87461	1	0.71403	1	0.79731	1	1	1	0.26247	1
16p gain	96 (17%)	479	0.68895	1	0.34242	1	0.61772	1	1	1	0.02077	1	0.84211	1	0.0067141	1	0.37109	1	0.0040692	1	0.17756	1	0.52191	1
16q gain	96 (17%)	479	0.85272	1	0.21498	1	0.454	1	1	1	0.017245	1	0.80934	1	0.00048357	0.402	0.31206	1	0.00040388	0.336	0.17756	1	0.33636	1
17p gain	13 (2%)	562	0.16291	1	0.66904	1	0.53124	1	0.77985	1	0.5333	1	0.55041	1	0.86159	1	0.0017145	1	0.65021	1	1	1	0.099699	1
17q gain	67 (12%)	508	0.044314	1	0.51047	1	0.77179	1	0.29986	1	0.12139	1	0.87741	1	0.98337	1	0.016261	1	0.38737	1	1	1	0.0089176	1
18p gain	21 (4%)	554	0.69573	1	0.93123	1	1	1	1	1	0.07985	1	0.52785	1	0.003174	1	1.407e-05	0.0119	0.71887	1	0.28627	1	1	1
18q gain	12 (2%)	563	0.63939	1	0.59607	1	1	1	0.39751	1	0.32015	1	0.10463	1	0.099598	1	0.82618	1	0.97605	1	0.174	1	0.684	1
19p gain	52 (9%)	523	0.57482	1	0.37004	1	0.25871	1	0.88432	1	0.079799	1	0.93578	1	0.88214	1	0.72416	1	0.98528	1	1	1	0.14565	1
19q gain	61 (11%)	514	0.27938	1	0.35074	1	0.36696	1	0.49893	1	0.36347	1	0.84791	1	0.98195	1	0.99183	1	0.88313	1	0.60752	1	0.56591	1
20p gain	288 (50%)	287	0.34036	1	0.56403	1	0.0014642	1	0.02402	1	8.7859e-09	7.49e-06	0.35442	1	0.36622	1	0.017127	1	0.035033	1	1	1	0.63529	1
20q gain	403 (70%)	172	0.43111	1	0.87954	1	4.3839e-05	0.0369	0.36223	1	1.9625e-15	1.68e-12	0.22073	1	0.040282	1	0.032833	1	0.0015225	1	0.73114	1	0.24397	1
21q gain	19 (3%)	556	0.26201	1	0.60661	1	0.29238	1	0.64407	1	0.66919	1	0.14563	1	0.14472	1	0.74096	1	0.2272	1	1	1	1	1
22q gain	7 (1%)	568	0.48676	1	0.54204	1	0.020119	1	0.70982	1	0.071043	1	1	1	0.161	1	0.17933	1	0.035862	1	1	1	0.601	1
Xq gain	17 (3%)	558	0.050765	1	0.46947	1	0.58261	1	0.62822	1	0.72332	1	0.23179	1	0.15895	1	1.6688e-07	0.000142	0.13159	1	1	1	0.48933	1
1p loss	68 (12%)	507	0.054034	1	0.93218	1	0.77387	1	0.52042	1	0.28135	1	0.71582	1	0.053265	1	0.18501	1	0.096218	1	1	1	0.096353	1
1q loss	25 (4%)	550	0.71711	1	0.1788	1	0.65054	1	0.31217	1	0.8763	1	0.75752	1	0.16432	1	0.63087	1	0.3462	1	0.33165	1	1	1
2p loss	10 (2%)	565	0.3106	1	0.32446	1	0.15095	1	0.75807	1	0.24748	1	0.83621	1	0.74763	1	0.85452	1	0.96796	1	1	1	0.37128	1
2q loss	8 (1%)	567	3.7841e-07	0.000322	0.80868	1	1	1	0.73026	1	0.86778	1	0.8932	1	0.88475	1	0.65809	1	0.33572	1	1	1	0.60902	1
3p loss	35 (6%)	540	3.1723e-05	0.0267	0.90882	1	0.33514	1	0.16272	1	0.036536	1	0.047172	1	0.069807	1	0.0036143	1	0.039107	1	0.43408	1	0.45514	1
3q loss	17 (3%)	558	0.035479	1	0.12132	1	0.79052	1	0.081542	1	0.001828	1	0.59815	1	0.74621	1	0.16868	1	0.16363	1	0.23817	1	0.48933	1
4p loss	122 (21%)	453	0.028026	1	0.28967	1	0.30367	1	0.47543	1	0.019836	1	0.80961	1	0.0097116	1	0.015092	1	0.0085686	1	0.10091	1	0.029271	1
4q loss	113 (20%)	462	0.41731	1	0.28845	1	0.008657	1	0.67399	1	0.0013248	1	0.74291	1	0.07633	1	0.51785	1	0.14864	1	0.079513	1	0.072163	1
5p loss	34 (6%)	541	0.50767	1	0.66017	1	0.84455	1	0.48067	1	0.1769	1	0.80407	1	0.059939	1	0.97373	1	0.11393	1	0.094115	1	0.018877	1
5q loss	60 (10%)	515	0.5333	1	0.65883	1	0.067172	1	0.89145	1	0.046009	1	0.46108	1	0.044953	1	0.76911	1	0.43923	1	0.0090768	1	1	1
6p loss	18 (3%)	557	0.4007	1	0.88913	1	1	1	0.81324	1	0.12611	1	1	1	0.56681	1	0.60539	1	0.72483	1	1	1	0.49243	1
6q loss	33 (6%)	542	0.067234	1	0.21141	1	0.54338	1	1	1	0.094256	1	0.68314	1	0.084193	1	0.0008809	0.729	0.47111	1	1	1	0.60613	1
7q loss	3 (1%)	572	NA	NA	0.19065	1	0.021298	1	0.59951	1	0.010619	1	0.67891	1	0.75675	1	0.92437	1	0.54955	1	1	1	1	1
8p loss	145 (25%)	430	0.94784	1	0.99603	1	0.0068717	1	0.083054	1	0.0014814	1	0.8125	1	0.037344	1	0.19046	1	0.2694	1	0.049261	1	0.1691	1
8q loss	12 (2%)	563	0.76487	1	0.11738	1	1	1	0.15412	1	1	1	1	1	1	1	0.19985	1	0.070881	1	1	1	0.23195	1
9p loss	39 (7%)	536	0.025344	1	0.27076	1	0.71191	1	1	1	0.74754	1	0.20367	1	0.75832	1	0.82995	1	0.48367	1	1	1	0.34045	1
9q loss	37 (6%)	538	0.28685	1	0.0098135	1	1	1	0.39518	1	0.53013	1	0.11052	1	0.63385	1	0.92538	1	0.34281	1	1	1	1	1
10p loss	40 (7%)	535	0.56629	1	0.010539	1	0.04296	1	0.51146	1	0.011122	1	0.72197	1	0.3533	1	0.59483	1	0.18509	1	0.47986	1	0.48856	1
10q loss	46 (8%)	529	0.34628	1	0.015143	1	0.003065	1	1	1	0.0026765	1	0.84067	1	0.7296	1	0.82894	1	0.53238	1	0.53043	1	0.82649	1
11p loss	40 (7%)	535	0.37745	1	0.96909	1	0.0058854	1	0.74284	1	0.0012839	1	0.94038	1	0.21551	1	0.9616	1	0.04172	1	0.47986	1	0.24835	1
11q loss	51 (9%)	524	0.74046	1	0.82125	1	0.0074532	1	0.37826	1	0.0023912	1	0.7019	1	0.15184	1	0.98089	1	0.46907	1	0.037697	1	1	1
12p loss	33 (6%)	542	0.070364	1	0.98571	1	0.3162	1	0.048133	1	0.11993	1	0.052598	1	0.018192	1	0.51143	1	0.19019	1	0.41479	1	0.80036	1
12q loss	28 (5%)	547	0.10284	1	0.57814	1	1	1	0.25165	1	0.30296	1	0.25873	1	0.025945	1	0.28998	1	0.096024	1	1	1	1	1
13q loss	12 (2%)	563	0.8739	1	0.86418	1	0.32924	1	1	1	0.30416	1	0.39365	1	0.025063	1	0.42612	1	0.51125	1	1	1	0.23195	1
14q loss	143 (25%)	432	0.38178	1	0.69638	1	0.065815	1	1	1	2.3358e-05	0.0197	0.50627	1	0.012453	1	0.2186	1	0.59724	1	1	1	0.58205	1
15q loss	156 (27%)	419	0.53117	1	0.63959	1	0.011281	1	0.85089	1	0.00051617	0.428	0.39271	1	0.2886	1	0.36471	1	0.20758	1	0.26278	1	0.89337	1
16p loss	15 (3%)	560	0.99285	1	0.54833	1	0.37943	1	0.1234	1	0.25958	1	0.95078	1	0.67329	1	0.98489	1	0.83195	1	1	1	1	1
16q loss	17 (3%)	558	0.45487	1	0.85191	1	0.0099885	1	0.62822	1	0.022927	1	0.88482	1	0.17896	1	0.97222	1	0.65191	1	0.23817	1	1	1
17p loss	252 (44%)	323	0.42942	1	0.58738	1	0.0018977	1	0.61439	1	5.6909e-07	0.000483	0.64789	1	0.043635	1	0.0008795	0.728	0.019617	1	0.18983	1	1	1
17q loss	45 (8%)	530	0.51956	1	0.85439	1	0.39011	1	0.87659	1	0.27825	1	0.6016	1	0.11209	1	0.92225	1	0.4591	1	0.1517	1	0.37613	1
18p loss	324 (56%)	251	0.6074	1	0.35057	1	2.1212e-05	0.0179	0.93302	1	1.1754e-14	1.01e-11	0.67114	1	0.0013354	1	0.0087437	1	0.0014684	1	0.73806	1	0.81043	1
18q loss	352 (61%)	223	0.42168	1	0.31973	1	1.8943e-07	0.000161	0.73148	1	3.748e-14	3.2e-11	0.23065	1	0.00036304	0.303	0.0027953	1	0.00024177	0.202	0.49353	1	0.71428	1
19p loss	20 (3%)	555	0.75752	1	0.53798	1	0.45437	1	0.11101	1	0.51905	1	0.57677	1	0.77468	1	0.55954	1	0.61862	1	1	1	1	1
19q loss	18 (3%)	557	0.95668	1	0.16608	1	0.59805	1	0.23533	1	0.6981	1	0.62041	1	0.75971	1	0.4036	1	0.94526	1	1	1	1	1
20p loss	47 (8%)	528	0.39032	1	0.81394	1	0.30361	1	0.76145	1	0.32704	1	0.41789	1	0.77723	1	0.73063	1	0.59647	1	1	1	1	1
21q loss	114 (20%)	461	0.34981	1	0.95631	1	0.0096655	1	0.40339	1	0.0099561	1	0.65078	1	0.07633	1	0.84293	1	0.21407	1	0.69483	1	0.76683	1
22q loss	122 (21%)	453	0.14283	1	0.07123	1	0.17031	1	0.26189	1	0.00020437	0.171	0.57326	1	0.012967	1	0.24346	1	0.054256	1	0.10091	1	0.38234	1
Xq loss	11 (2%)	564	0.38552	1	0.25072	1	0.15095	1	1	1	0.29118	1	0.74354	1	0.33678	1	0.40154	1	0.54871	1	1	1	1	1