Clinical Features	Time to Death		AGE		GENDER		PATHOLOGY.T		PATHOLOGY.N		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.2)	66 (23%)	222	0.49314	1	0.16951	1	0.87734	1	0.81383	1	0.30329	1	0.75383	1	0.15445	1	0.44804	1
Amp Peak  2(2q11.2)	63 (22%)	225	0.49504	1	0.54823	1	0.4313	1	0.0057845	1	0.63976	1	0.13914	1	1	1	0.84717	1
Amp Peak  3(2q31.2)	64 (22%)	224	0.19606	1	0.8114	1	0.87492	1	0.33431	1	0.48495	1	0.91099	1	0.6306	1	1	1
Amp Peak  4(3q26.33)	215 (75%)	73	0.1224	1	0.043372	1	0.01547	1	0.29716	1	0.23806	1	0.05629	1	0.35869	1	0.19916	1
Amp Peak  5(5p15.33)	128 (44%)	160	0.38848	1	0.093452	1	0.14662	1	0.23332	1	0.26335	1	0.31259	1	0.031487	1	0.339	1
Amp Peak  6(5p12)	110 (38%)	178	0.6462	1	0.1459	1	0.22477	1	0.26287	1	0.30103	1	0.73361	1	0.018967	1	0.51511	1
Amp Peak  7(6p12.1)	57 (20%)	231	0.57919	1	0.14213	1	0.86951	1	0.50549	1	0.81208	1	0.37867	1	0.096348	1	0.23179	1
Amp Peak  8(6q12)	54 (19%)	234	0.46342	1	0.44979	1	0.86677	1	0.72091	1	0.89148	1	0.31744	1	0.03909	1	0.15284	1
Amp Peak  9(7p11.2)	126 (44%)	162	0.070011	1	0.065831	1	1	1	0.023634	1	0.41432	1	0.39776	1	0.89306	1	1	1
Amp Peak 10(7q22.1)	101 (35%)	187	0.029986	1	0.81878	1	0.27214	1	0.017639	1	0.092782	1	0.13562	1	0.26249	1	0.40778	1
Amp Peak 11(8p11.23)	92 (32%)	196	0.27338	1	0.82177	1	0.88848	1	0.21282	1	0.55759	1	0.24555	1	0.88624	1	0.39265	1
Amp Peak 12(8q11.21)	166 (58%)	122	0.7182	1	0.23595	1	0.50861	1	0.96296	1	0.53041	1	0.79049	1	0.49933	1	0.74882	1
Amp Peak 13(8q24.21)	207 (72%)	81	0.42422	1	0.12995	1	0.24438	1	0.56354	1	0.00030774	0.169	0.26097	1	0.76682	1	0.85939	1
Amp Peak 14(9p23)	69 (24%)	219	0.82287	1	0.56468	1	0.092916	1	0.8679	1	0.33587	1	0.57366	1	0.75617	1	0.45926	1
Amp Peak 15(9p13.3)	82 (28%)	206	0.64672	1	0.78238	1	0.38841	1	0.4619	1	0.44529	1	0.42897	1	1	1	0.59761	1
Amp Peak 16(11p13)	57 (20%)	231	0.68729	1	0.068513	1	0.622	1	0.56505	1	0.35782	1	0.81812	1	0.7396	1	0.23179	1
Amp Peak 17(11p11.2)	57 (20%)	231	0.34034	1	0.84326	1	0.41089	1	0.88015	1	0.051284	1	0.75724	1	0.61497	1	0.23179	1
Amp Peak 18(11q13.3)	134 (47%)	154	0.0041824	1	0.093867	1	0.51294	1	0.32505	1	0.049003	1	0.16384	1	0.22969	1	1	1
Amp Peak 19(12p13.33)	102 (35%)	186	0.77911	1	0.22586	1	0.33978	1	0.62833	1	0.82139	1	0.95281	1	0.48509	1	0.62107	1
Amp Peak 20(12q15)	58 (20%)	230	0.31846	1	0.42255	1	1	1	0.83177	1	0.72562	1	0.58838	1	0.40541	1	0.32314	1
Amp Peak 21(13q22.1)	67 (23%)	221	0.19737	1	0.055829	1	0.43943	1	0.71243	1	0.59289	1	0.76124	1	0.75183	1	0.4526	1
Amp Peak 22(14q11.2)	81 (28%)	207	0.84335	1	0.48907	1	1	1	0.82733	1	0.86585	1	0.85121	1	0.55296	1	0.29102	1
Amp Peak 23(15q26.3)	62 (22%)	226	0.004514	1	0.22395	1	1	1	0.31114	1	0.88806	1	0.83838	1	0.51679	1	0.70199	1
Amp Peak 24(17q12)	50 (17%)	238	0.077433	1	0.28061	1	0.1715	1	0.26492	1	0.39671	1	0.07236	1	0.29391	1	0.21255	1
Amp Peak 25(18p11.31)	88 (31%)	200	0.13949	1	0.079477	1	0.0002064	0.114	0.036132	1	0.67235	1	0.014952	1	0.773	1	0.082627	1
Amp Peak 26(18q11.2)	65 (23%)	223	0.87508	1	0.0073435	1	0.027571	1	0.43111	1	0.79961	1	0.88868	1	0.3418	1	0.035496	1
Amp Peak 27(20q11.22)	131 (45%)	157	0.93499	1	0.14265	1	0.35749	1	0.82839	1	0.66108	1	0.96704	1	0.59148	1	0.26541	1
Amp Peak 28(Xq28)	92 (32%)	196	0.55333	1	0.55587	1	0.67392	1	0.10666	1	0.1408	1	0.9369	1	0.11528	1	0.17594	1
Del Peak  1(1p36.13)	61 (21%)	227	0.10506	1	0.084063	1	0.20259	1	0.36748	1	0.40003	1	0.52338	1	0.25157	1	0.030109	1
Del Peak  2(1p13.2)	73 (25%)	215	0.25328	1	0.31897	1	1	1	0.36188	1	0.24249	1	0.36064	1	0.54102	1	0.85525	1
Del Peak  3(2q21.2)	33 (11%)	255	0.7583	1	0.163	1	0.064017	1	0.17947	1	0.027314	1	0.34801	1	0.53603	1	0.62108	1
Del Peak  4(2q22.1)	59 (20%)	229	0.42324	1	0.50766	1	0.19332	1	0.079788	1	0.066478	1	0.32304	1	0.41284	1	0.5593	1
Del Peak  5(2q37.3)	82 (28%)	206	0.41735	1	0.91053	1	0.56522	1	0.0083982	1	0.68037	1	0.37992	1	0.88339	1	0.86034	1
Del Peak  6(3p24.1)	216 (75%)	72	0.00064948	0.356	0.31003	1	0.010136	1	0.0031112	1	0.015452	1	0.0083374	1	1	1	0.85565	1
Del Peak  7(3p14.2)	220 (76%)	68	0.00030052	0.165	0.32223	1	0.020256	1	0.044366	1	0.024443	1	0.01345	1	0.63738	1	0.85119	1
Del Peak  8(3p12.2)	207 (72%)	81	0.0002612	0.144	0.99352	1	0.24438	1	0.1161	1	0.11718	1	0.055304	1	1	1	0.48257	1
Del Peak  9(4p15.2)	125 (43%)	163	0.086824	1	0.27155	1	0.29235	1	0.52705	1	0.31831	1	0.24057	1	0.42205	1	0.078455	1
Del Peak 10(4q22.1)	94 (33%)	194	0.43318	1	0.73597	1	0.57654	1	0.76454	1	0.98411	1	0.8428	1	0.56948	1	0.39686	1
Del Peak 11(4q35.2)	119 (41%)	169	0.1128	1	0.31834	1	0.14591	1	0.14749	1	0.94522	1	0.39625	1	0.68541	1	0.26053	1
Del Peak 12(5q11.2)	123 (43%)	165	0.36457	1	0.068044	1	0.047736	1	0.20551	1	0.31107	1	0.72049	1	0.34748	1	0.62905	1
Del Peak 13(5q35.3)	113 (39%)	175	0.24549	1	0.11242	1	0.22794	1	0.1206	1	0.44726	1	0.29743	1	0.41284	1	0.62709	1
Del Peak 14(6p25.3)	60 (21%)	228	0.2465	1	0.34829	1	0.42095	1	0.028021	1	0.90742	1	0.51946	1	1	1	0.43228	1
Del Peak 15(6q12)	58 (20%)	230	0.84354	1	0.97475	1	0.049152	1	0.80101	1	0.81307	1	0.98414	1	0.74048	1	0.4272	1
Del Peak 16(7q36.1)	72 (25%)	216	0.020628	1	0.78805	1	0.13089	1	0.84635	1	0.14481	1	0.18961	1	1	1	0.71289	1
Del Peak 17(8p23.2)	164 (57%)	124	0.0058649	1	0.12588	1	0.69173	1	0.83448	1	0.57232	1	0.89281	1	0.68665	1	0.33622	1
Del Peak 18(9p23)	134 (47%)	154	0.38753	1	0.11485	1	0.35954	1	0.33044	1	0.94423	1	0.9161	1	0.42182	1	0.87332	1
Del Peak 19(9p21.3)	170 (59%)	118	0.013079	1	0.54355	1	0.59577	1	0.47939	1	0.9932	1	0.85276	1	0.34157	1	0.87162	1
Del Peak 20(9q21.11)	54 (19%)	234	0.9779	1	0.9762	1	1	1	0.89123	1	0.83218	1	0.57437	1	1	1	0.84015	1
Del Peak 21(9q34.3)	47 (16%)	241	0.7648	1	0.40581	1	0.59498	1	0.80048	1	0.82708	1	0.91881	1	0.4707	1	0.051029	1
Del Peak 22(10p11.21)	93 (32%)	195	0.16738	1	0.84203	1	0.40345	1	0.27752	1	0.41653	1	0.59682	1	0.085692	1	0.23242	1
Del Peak 23(10q23.31)	75 (26%)	213	0.18687	1	0.60484	1	0.37519	1	0.7753	1	0.86244	1	0.92578	1	0.76111	1	1	1
Del Peak 24(11p15.4)	92 (32%)	196	0.051152	1	0.50023	1	0.67392	1	0.68137	1	0.010533	1	0.47316	1	1	1	0.30986	1
Del Peak 25(11q23.1)	138 (48%)	150	0.96886	1	0.31268	1	0.005741	1	0.70474	1	0.066461	1	0.86038	1	0.50614	1	0.33836	1
Del Peak 26(12q24.33)	37 (13%)	251	0.53375	1	0.7773	1	0.6968	1	0.66394	1	0.712	1	0.87	1	1	1	0.3451	1
Del Peak 27(13q12.11)	131 (45%)	157	0.96892	1	0.27894	1	0.14785	1	0.11333	1	0.22948	1	0.089786	1	0.89405	1	0.74936	1
Del Peak 28(13q21.33)	103 (36%)	185	0.18974	1	0.70265	1	1	1	0.34564	1	0.27743	1	0.17729	1	0.8892	1	0.86861	1
Del Peak 29(14q11.2)	43 (15%)	245	0.34145	1	0.27428	1	0.85425	1	0.23305	1	0.41973	1	0.32522	1	1	1	0.8236	1
Del Peak 30(14q32.32)	42 (15%)	246	0.39346	1	0.64369	1	0.35576	1	0.19442	1	0.63438	1	0.52354	1	0.26281	1	1	1
Del Peak 31(15q15.1)	72 (25%)	216	0.49675	1	0.71054	1	0.22762	1	0.056255	1	0.10867	1	0.38183	1	0.22058	1	0.46154	1
Del Peak 32(16q12.1)	45 (16%)	243	0.67886	1	0.59277	1	0.85907	1	0.93551	1	0.60265	1	0.63495	1	0.35873	1	0.18785	1
Del Peak 33(16q23.3)	55 (19%)	233	0.39715	1	0.31944	1	1	1	0.75903	1	0.1871	1	0.72596	1	1	1	0.83991	1
Del Peak 34(17q25.3)	37 (13%)	251	0.74148	1	0.84711	1	1	1	0.30734	1	0.38881	1	0.57622	1	0.23039	1	0.091267	1
Del Peak 35(18q21.2)	152 (53%)	136	0.16881	1	0.35659	1	0.012579	1	0.71916	1	0.7015	1	0.65004	1	0.50355	1	0.34051	1
Del Peak 36(18q23)	163 (57%)	125	0.10808	1	0.097999	1	0.047167	1	0.73163	1	0.7811	1	0.81716	1	0.50024	1	0.19808	1
Del Peak 37(19p13.3)	100 (35%)	188	0.019412	1	0.18034	1	0.58476	1	0.78938	1	0.56696	1	0.49131	1	0.4846	1	0.24246	1
Del Peak 38(19q13.43)	57 (20%)	231	0.046771	1	0.21705	1	0.86951	1	0.033566	1	0.94457	1	0.39645	1	0.50631	1	0.31687	1
Del Peak 39(Xp21.3)	96 (33%)	192	0.057883	1	0.44272	1	0.67686	1	0.032617	1	0.020195	1	0.64931	1	0.20315	1	0.0022521	1
Del Peak 40(Xp11.3)	99 (34%)	189	0.0037624	1	0.98347	1	0.49116	1	0.065843	1	0.096887	1	0.68931	1	0.20512	1	0.028562	1
Del Peak 41(Xq21.33)	49 (17%)	239	0.2081	1	0.88074	1	1	1	0.48635	1	0.85828	1	0.27962	1	0.59462	1	1	1