Clinical Features	Time to Death		AGE		GENDER		PATHOLOGY.T		PATHOLOGY.N		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	11 (4%)	277	0.71416	1	0.50735	1	0.079755	1	0.3692	1	0.73998	1	0.88126	1	0.73339	1	1	1
1q gain	37 (13%)	251	0.92549	1	0.95513	1	0.84553	1	0.45586	1	0.032224	1	0.42814	1	0.10959	1	0.63626	1
2p gain	29 (10%)	259	0.70729	1	0.69427	1	0.39324	1	0.86894	1	0.81887	1	0.5141	1	0.65685	1	1	1
2q gain	20 (7%)	268	0.70842	1	0.99372	1	0.6063	1	0.80403	1	0.82331	1	0.95114	1	1	1	0.54662	1
3p gain	25 (9%)	263	0.11185	1	0.84315	1	0.48545	1	0.66657	1	0.86897	1	0.7165	1	0.48477	1	0.57525	1
3q gain	95 (33%)	193	0.37456	1	0.35773	1	0.12611	1	0.92204	1	0.46282	1	0.16844	1	0.0027054	1	0.00061329	0.388
4p gain	13 (5%)	275	0.59733	1	0.10261	1	0.76197	1	0.85387	1	0.56497	1	0.43847	1	0.33828	1	0.043303	1
4q gain	9 (3%)	279	0.64595	1	0.83802	1	1	1	0.22696	1	0.57451	1	0.44305	1	1	1	0.64373	1
5p gain	70 (24%)	218	0.63185	1	0.36444	1	0.093654	1	0.72795	1	0.83023	1	0.46606	1	0.27862	1	0.35501	1
5q gain	23 (8%)	265	0.84329	1	0.82515	1	0.33383	1	0.37112	1	0.95074	1	0.096359	1	0.21501	1	0.23387	1
6p gain	24 (8%)	264	0.45099	1	0.040911	1	0.81647	1	0.43372	1	0.28186	1	0.25219	1	0.049906	1	0.14463	1
6q gain	17 (6%)	271	0.65051	1	0.22687	1	1	1	0.077372	1	0.22473	1	0.030223	1	0.049688	1	0.084901	1
7p gain	64 (22%)	224	0.37497	1	0.053879	1	0.26962	1	0.76309	1	0.88685	1	0.8736	1	1	1	0.84866	1
7q gain	38 (13%)	250	0.51991	1	0.93808	1	0.33889	1	0.67813	1	0.67566	1	0.67436	1	1	1	1	1
8p gain	44 (15%)	244	0.014839	1	0.55077	1	0.27528	1	0.48334	1	0.78992	1	0.69753	1	0.71031	1	0.38524	1
8q gain	121 (42%)	167	0.089698	1	0.095855	1	0.79248	1	0.14028	1	0.1746	1	0.32906	1	0.89238	1	0.7474	1
9p gain	34 (12%)	254	0.28379	1	0.14349	1	0.10224	1	0.98376	1	0.58549	1	0.46259	1	0.83655	1	1	1
9q gain	41 (14%)	247	0.43111	1	0.065566	1	0.57777	1	0.62792	1	0.87811	1	0.74582	1	0.4449	1	0.35947	1
10p gain	12 (4%)	276	0.95653	1	0.63831	1	0.51967	1	0.64888	1	0.36554	1	1	1	0.52275	1	1	1
10q gain	6 (2%)	282	0.091275	1	0.44631	1	1	1	0.40341	1	1	1	0.75802	1	0.043653	1	0.057039	1
11p gain	15 (5%)	273	0.4091	1	0.24297	1	1	1	0.093258	1	1	1	0.19521	1	0.55161	1	1	1
11q gain	16 (6%)	272	0.82876	1	0.1972	1	0.39852	1	0.60255	1	0.92911	1	0.40154	1	0.77048	1	1	1
12p gain	58 (20%)	230	0.11377	1	0.34823	1	0.19186	1	0.53242	1	1	1	0.79634	1	0.31912	1	0.23213	1
12q gain	25 (9%)	263	0.22883	1	0.89702	1	0.06533	1	0.8436	1	0.73749	1	0.65317	1	0.48477	1	1	1
13q gain	17 (6%)	271	0.61977	1	0.9855	1	1	1	0.49843	1	0.074466	1	0.26946	1	1	1	1	1
14q gain	48 (17%)	240	0.98783	1	0.91968	1	0.2227	1	0.97641	1	0.64813	1	0.4285	1	0.21321	1	0.28717	1
15q gain	11 (4%)	277	0.66657	1	0.88456	1	0.50981	1	0.14604	1	0.83707	1	0.23579	1	0.29852	1	1	1
16p gain	19 (7%)	269	0.57572	1	0.003945	1	1	1	0.88272	1	0.086326	1	0.18364	1	0.78886	1	1	1
16q gain	24 (8%)	264	0.8999	1	0.18664	1	1	1	0.64027	1	0.35383	1	0.44615	1	1	1	1	1
17p gain	17 (6%)	271	0.46152	1	0.94846	1	0.1663	1	0.24854	1	0.8533	1	0.31203	1	1	1	0.32398	1
17q gain	19 (7%)	269	0.72849	1	0.99073	1	0.29437	1	0.010911	1	0.12855	1	0.096359	1	0.78886	1	0.33042	1
18p gain	47 (16%)	241	0.21746	1	0.65686	1	0.00064228	0.405	0.0066435	1	0.53051	1	0.036461	1	0.4707	1	0.13368	1
18q gain	18 (6%)	270	0.068694	1	0.91293	1	0.11145	1	0.66495	1	0.51837	1	0.89572	1	1	1	0.74686	1
19p gain	10 (3%)	278	0.035981	1	0.21333	1	0.73064	1	0.3966	1	0.88563	1	0.35712	1	0.72684	1	1	1
19q gain	20 (7%)	268	0.12949	1	0.89041	1	1	1	0.093562	1	0.63894	1	0.23996	1	0.60702	1	0.54662	1
20p gain	62 (22%)	226	0.091025	1	0.1355	1	0.52433	1	0.36171	1	0.13471	1	0.21314	1	0.015283	1	0.0035924	1
20q gain	65 (23%)	223	0.41577	1	0.025232	1	0.21102	1	0.35685	1	0.60872	1	0.50008	1	0.0064291	1	0.0073051	1
21q gain	8 (3%)	280	0.8824	1	0.090946	1	1	1	0.90721	1	1	1	0.45494	1	1	1	1	1
22q gain	37 (13%)	251	0.41545	1	0.23738	1	0.43494	1	0.87913	1	0.12571	1	0.98738	1	0.84379	1	0.81226	1
Xq gain	20 (7%)	268	0.080753	1	0.64834	1	0.6063	1	0.46662	1	0.2633	1	0.97033	1	0.60702	1	0.7524	1
1p loss	16 (6%)	272	0.27173	1	0.12606	1	0.56912	1	0.012688	1	0.38089	1	0.26027	1	0.37967	1	0.3072	1
2p loss	4 (1%)	284	0.29788	1	0.84144	1	0.31492	1	0.70111	1	0.80888	1	0.70748	1	0.28473	1	0.12592	1
2q loss	7 (2%)	281	0.27982	1	0.88811	1	0.40587	1	0.12892	1	0.80888	1	0.38543	1	0.67989	1	0.60352	1
3p loss	112 (39%)	176	0.024223	1	0.66627	1	0.010924	1	0.42151	1	0.0094126	1	0.84652	1	0.89199	1	0.74499	1
3q loss	19 (7%)	269	0.14127	1	0.298	1	0.29437	1	0.57282	1	0.13664	1	0.45109	1	0.59531	1	0.52637	1
4p loss	69 (24%)	219	0.11349	1	0.54575	1	0.21941	1	0.23935	1	0.46426	1	0.069952	1	1	1	0.35027	1
4q loss	47 (16%)	241	0.93599	1	0.87394	1	0.72593	1	0.21094	1	0.70467	1	0.34506	1	0.58897	1	0.83206	1
5p loss	8 (3%)	280	0.47535	1	0.13747	1	0.69079	1	0.86573	1	1	1	0.42504	1	0.11542	1	0.36144	1
5q loss	58 (20%)	230	0.31453	1	0.1316	1	0.32858	1	0.26326	1	0.6077	1	0.30162	1	1	1	1	1
6p loss	18 (6%)	270	0.30796	1	0.52176	1	0.41637	1	0.0036935	1	0.658	1	0.14609	1	0.58055	1	0.50849	1
6q loss	21 (7%)	267	0.71022	1	0.14085	1	0.45258	1	0.017603	1	0.5838	1	0.21873	1	1	1	0.54514	1
7p loss	5 (2%)	283	0.72088	1	0.52026	1	1	1	0.77813	1	1	1	1	1	1	1	0.59248	1
7q loss	9 (3%)	279	0.90837	1	0.76581	1	0.71461	1	0.30287	1	0.57451	1	0.76896	1	0.4533	1	1	1
8p loss	60 (21%)	228	0.029719	1	0.82892	1	1	1	0.024112	1	0.97788	1	0.17082	1	0.74264	1	0.23858	1
8q loss	7 (2%)	281	0.30012	1	0.67215	1	0.67739	1	1	1	0.32482	1	0.60042	1	1	1	0.32032	1
9p loss	81 (28%)	207	0.38769	1	0.22719	1	0.3091	1	0.79403	1	0.94103	1	0.44187	1	1	1	0.72593	1
9q loss	29 (10%)	259	0.35545	1	0.26557	1	1	1	0.87835	1	0.78715	1	0.27121	1	0.82786	1	0.43918	1
10p loss	42 (15%)	246	0.2051	1	0.36815	1	0.35576	1	0.11587	1	0.43392	1	0.63224	1	1	1	0.82364	1
10q loss	23 (8%)	265	0.26135	1	0.69626	1	0.14437	1	0.37501	1	0.74856	1	0.37986	1	0.62777	1	0.7759	1
11p loss	37 (13%)	251	0.42442	1	0.9933	1	0.43494	1	0.7455	1	0.017532	1	0.10844	1	0.68975	1	0.091267	1
11q loss	53 (18%)	235	0.5238	1	0.69187	1	0.061758	1	1	1	0.2095	1	0.46244	1	0.023915	1	0.0015489	0.976
12p loss	11 (4%)	277	0.1546	1	0.0082915	1	0.1905	1	0.079363	1	0.017409	1	0.1158	1	0.040939	1	0.08574	1
12q loss	8 (3%)	280	0.60748	1	0.37693	1	0.44893	1	1	1	0.24533	1	1	1	0.43884	1	0.62106	1
13q loss	55 (19%)	233	0.77653	1	0.64949	1	0.031142	1	0.38912	1	0.78494	1	0.20342	1	0.7341	1	0.83991	1
14q loss	12 (4%)	276	0.49141	1	0.97855	1	0.51967	1	0.35021	1	0.88563	1	0.23849	1	0.31196	1	0.42153	1
15q loss	21 (7%)	267	0.41118	1	0.84016	1	0.80309	1	0.73594	1	0.34166	1	0.73115	1	0.80008	1	0.75856	1
16p loss	9 (3%)	279	0.13162	1	0.55309	1	1	1	0.33878	1	0.18039	1	0.75802	1	1	1	0.36358	1
16q loss	18 (6%)	270	0.59816	1	0.4797	1	0.41637	1	0.95911	1	1	1	0.48503	1	0.78891	1	0.32449	1
17p loss	38 (13%)	250	0.32861	1	0.072522	1	0.081834	1	0.1812	1	0.69907	1	0.061273	1	0.55388	1	1	1
17q loss	5 (2%)	283	0.75342	1	0.50003	1	0.32649	1	1	1	0.39846	1	0.42105	1	0.11683	1	0.1884	1
18p loss	27 (9%)	261	0.81327	1	0.63155	1	0.50801	1	0.9409	1	0.41435	1	1	1	0.65306	1	0.17144	1
18q loss	76 (26%)	212	0.070102	1	0.03813	1	0.37314	1	0.90829	1	0.66938	1	0.82853	1	0.76385	1	0.10538	1
19p loss	26 (9%)	262	0.017161	1	0.67026	1	0.01217	1	0.17326	1	0.088469	1	0.070482	1	0.48794	1	0.58966	1
19q loss	19 (7%)	269	0.081776	1	0.41744	1	0.11106	1	0.008092	1	0.10805	1	0.022463	1	1	1	0.2103	1
20p loss	19 (7%)	269	0.41312	1	0.25365	1	0.29437	1	0.56649	1	0.31478	1	0.48192	1	0.78886	1	1	1
20q loss	8 (3%)	280	0.38605	1	0.85464	1	0.11079	1	0.28041	1	0.73069	1	0.75802	1	1	1	1	1
21q loss	50 (17%)	238	0.85526	1	0.076587	1	0.085979	1	0.41065	1	0.039912	1	0.9244	1	1	1	0.83323	1
22q loss	22 (8%)	266	0.15255	1	0.90453	1	0.3338	1	0.27924	1	0.2689	1	0.41847	1	0.80507	1	1	1
Xq loss	9 (3%)	279	0.60819	1	0.85831	1	0.12292	1	0.2697	1	0.097758	1	0.036301	1	0.70259	1	1	1