Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	37 (13%)	250	0.8089	1	0.0045828	1	0.85997	1	0.55347	1	0.96894	1	0.65647	1	0.014512	1	0.68646	1	0.0090899	1	0.48453	1	0.81025	1
1q gain	113 (39%)	174	0.74427	1	0.50739	1	0.63006	1	0.55083	1	0.62764	1	0.65651	1	0.066019	1	0.34675	1	0.062657	1	0.62838	1	0.13253	1
2p gain	36 (13%)	251	0.13264	1	0.063907	1	0.03084	1	0.68508	1	0.78488	1	0.0749	1	0.67445	1	0.087147	1	0.12147	1	1	1	0.8057	1
2q gain	30 (10%)	257	0.19821	1	0.23026	1	0.24791	1	NA	NA	0.22632	1	0.28192	1	0.96262	1	0.097513	1	0.23241	1	0.70404	1	1	1
3p gain	9 (3%)	278	0.12389	1	0.65267	1	0.73685	1	NA	NA	0.90605	1	0.0853	1	0.62369	1	0.5465	1	0.42685	1	0.46503	1	0.63182	1
3q gain	18 (6%)	269	0.13541	1	0.49393	1	0.8091	1	NA	NA	0.9598	1	0.86646	1	0.29272	1	0.91002	1	0.55977	1	0.3381	1	0.49436	1
4p gain	21 (7%)	266	0.64509	1	0.013691	1	0.36426	1	NA	NA	0.060727	1	0.23423	1	0.89585	1	0.090822	1	0.26861	1	1	1	1	1
4q gain	8 (3%)	279	0.61899	1	0.5571	1	0.14903	1	NA	NA	6.6831e-05	0.0551	0.082358	1	0.36515	1	0.50626	1	0.64456	1	0.42593	1	1	1
5p gain	111 (39%)	176	0.54145	1	0.30811	1	0.71537	1	0.79065	1	0.30345	1	0.40408	1	0.80464	1	0.90704	1	0.97648	1	0.08976	1	0.50616	1
5q gain	36 (13%)	251	0.70295	1	0.83644	1	0.37807	1	NA	NA	0.81326	1	0.57112	1	0.66326	1	0.54655	1	0.79753	1	0.073073	1	0.13348	1
6p gain	40 (14%)	247	0.89169	1	0.65542	1	0.49479	1	0.83345	1	0.6958	1	0.46562	1	0.19337	1	0.79276	1	0.76203	1	1	1	0.64114	1
6q gain	11 (4%)	276	0.49569	1	0.091177	1	0.012912	1	NA	NA	0.99032	1	0.84549	1	0.50539	1	0.61976	1	0.42928	1	1	1	0.67865	1
7p gain	99 (34%)	188	0.24466	1	0.051844	1	1	1	0.24577	1	0.44334	1	0.17898	1	0.01742	1	0.090671	1	0.051011	1	0.61834	1	0.60554	1
7q gain	71 (25%)	216	0.90398	1	0.0038384	1	0.4107	1	0.97615	1	0.66615	1	0.36506	1	0.20742	1	0.060136	1	0.048621	1	0.58159	1	0.44915	1
8p gain	34 (12%)	253	0.21451	1	0.0012711	1	0.14221	1	NA	NA	0.86095	1	0.66953	1	1	1	0.3149	1	0.97174	1	0.47993	1	0.20103	1
8q gain	90 (31%)	197	0.91843	1	0.00024608	0.203	0.25287	1	0.37008	1	0.41663	1	0.82862	1	0.45281	1	0.35572	1	0.49407	1	0.79949	1	0.59882	1
9p gain	7 (2%)	280	0.20763	1	0.29934	1	0.25375	1	NA	NA	0.99278	1	0.34414	1	0.56932	1	0.47423	1	1	1	1	1	0.60003	1
9q gain	3 (1%)	284	0.059172	1	0.22581	1	1	1	NA	NA	0.99999	1	0.70932	1	1	1	0.63164	1	1	1	1	1	1	1
10p gain	32 (11%)	255	0.93805	1	0.17258	1	0.26004	1	0.97701	1	0.21959	1	0.5505	1	0.21285	1	0.84455	1	0.62112	1	0.70579	1	0.79753	1
10q gain	19 (7%)	268	0.99104	1	0.60577	1	0.34347	1	NA	NA	0.10375	1	0.48719	1	0.49847	1	0.38625	1	0.60356	1	1	1	0.74779	1
11p gain	23 (8%)	264	0.73593	1	0.10513	1	0.38351	1	NA	NA	0.68874	1	0.72566	1	0.49362	1	1	1	0.44262	1	1	1	0.76371	1
11q gain	34 (12%)	253	0.48544	1	0.00031202	0.257	0.065989	1	0.70108	1	0.76059	1	0.59039	1	0.70226	1	0.56026	1	0.22664	1	0.47993	1	1	1
12p gain	39 (14%)	248	0.86043	1	0.003487	1	0.60476	1	NA	NA	0.68925	1	0.1532	1	0.065142	1	1	1	0.049532	1	1	1	1	1
12q gain	31 (11%)	256	0.75031	1	0.0010069	0.828	0.44817	1	NA	NA	0.76624	1	0.14676	1	0.12866	1	0.69154	1	0.073834	1	0.70456	1	0.596	1
13q gain	15 (5%)	272	0.57262	1	0.5275	1	1	1	NA	NA	0.98163	1	0.11201	1	0.42351	1	0.13666	1	0.54238	1	1	1	0.25968	1
14q gain	33 (11%)	254	0.16618	1	0.19177	1	0.26896	1	0.7766	1	0.04988	1	0.60816	1	0.57051	1	0.7025	1	0.86316	1	0.70769	1	0.79787	1
15q gain	10 (3%)	277	0.2765	1	0.37664	1	0.75768	1	NA	NA	0.091922	1	0.67892	1	0.35082	1	0.44282	1	0.21022	1	1	1	1	1
16p gain	40 (14%)	247	0.5902	1	0.15819	1	0.86549	1	0.34203	1	0.61052	1	0.47395	1	0.56858	1	0.63479	1	0.56342	1	0.73571	1	0.23375	1
16q gain	26 (9%)	261	0.65799	1	0.26402	1	0.41699	1	0.30225	1	0.47015	1	0.35358	1	0.51771	1	0.41848	1	0.53032	1	1	1	0.56879	1
17p gain	16 (6%)	271	0.79002	1	0.63351	1	0.20254	1	0.20833	1	0.40989	1	0.9662	1	0.50705	1	0.39601	1	0.34173	1	0.015108	1	0.28169	1
17q gain	48 (17%)	239	0.20846	1	0.34857	1	1	1	0.37911	1	0.24316	1	0.028555	1	0.5172	1	0.02573	1	0.027817	1	0.10375	1	0.2724	1
18p gain	19 (7%)	268	0.56599	1	0.34223	1	0.34347	1	NA	NA	0.21782	1	0.85401	1	0.7487	1	1	1	0.92294	1	1	1	0.50723	1
18q gain	14 (5%)	273	0.46558	1	0.20523	1	0.42203	1	NA	NA	0.07243	1	0.92317	1	0.79734	1	0.52772	1	0.86716	1	1	1	0.24214	1
19p gain	4 (1%)	283	0.98824	1	0.60586	1	0.62723	1	NA	NA	0.99257	1	0.49091	1	0.33813	1	0.24497	1	0.1641	1	0.24079	1	0.48804	1
19q gain	11 (4%)	276	0.77642	1	0.67805	1	0.55574	1	NA	NA	0.99261	1	0.15976	1	0.83288	1	0.28845	1	0.70371	1	0.53578	1	0.22509	1
20p gain	42 (15%)	245	0.85137	1	0.32295	1	1	1	0.6084	1	0.77348	1	0.33241	1	0.45712	1	0.7161	1	0.37483	1	0.74711	1	0.038075	1
20q gain	49 (17%)	238	0.72021	1	0.16692	1	0.52931	1	0.15313	1	0.74712	1	0.1111	1	0.92396	1	0.46989	1	0.69751	1	0.21462	1	0.051298	1
21q gain	26 (9%)	261	0.49553	1	0.57663	1	0.1476	1	NA	NA	0.63622	1	0.6268	1	0.55787	1	0.41848	1	0.93408	1	1	1	0.25574	1
22q gain	13 (5%)	274	0.47431	1	0.089155	1	1	1	NA	NA	0.44879	1	0.19927	1	0.070222	1	0.88078	1	0.40313	1	0.5976	1	0.033622	1
Xq gain	14 (5%)	273	0.36135	1	0.23474	1	0.17896	1	NA	NA	0.68575	1	0.341	1	0.92796	1	0.77897	1	0.90704	1	1	1	0.4573	1
1p loss	22 (8%)	265	0.21967	1	0.82127	1	0.11794	1	NA	NA	0.89377	1	0.72566	1	0.81913	1	0.33317	1	0.047435	1	0.16915	1	1	1
1q loss	10 (3%)	277	3.7709e-06	0.00311	0.46664	1	0.52104	1	NA	NA	0.58013	1	0.55927	1	0.22761	1	1	1	0.079362	1	0.13596	1	1	1
2p loss	3 (1%)	284	NA	NA	NA	NA	1	1	NA	NA	0.99779	1	1	1	1	1	0.63164	1	1	1	1	1	0.39418	1
3p loss	56 (20%)	231	0.86365	1	0.68809	1	0.7658	1	0.02501	1	0.90835	1	0.64009	1	0.4669	1	0.15852	1	0.0037618	1	0.77145	1	0.30804	1
3q loss	30 (10%)	257	0.8658	1	0.71225	1	0.44174	1	0.053261	1	0.9957	1	0.48327	1	0.65575	1	0.56655	1	0.21829	1	1	1	0.42813	1
4p loss	26 (9%)	261	0.46746	1	0.026099	1	0.10327	1	0.72263	1	0.66389	1	0.32823	1	0.26594	1	0.65074	1	0.4897	1	0.39561	1	0.56879	1
4q loss	31 (11%)	256	0.52228	1	0.046883	1	0.012659	1	0.98399	1	0.9689	1	0.16243	1	0.0070072	1	0.51386	1	0.065024	1	0.13508	1	0.79753	1
5p loss	6 (2%)	281	0.91411	1	0.17773	1	0.41875	1	NA	NA	0.453	1	0.57555	1	0.83994	1	0.40447	1	0.44769	1	1	1	0.23033	1
5q loss	38 (13%)	249	0.59757	1	0.064799	1	0.013605	1	NA	NA	0.094583	1	0.87141	1	0.069834	1	0.72568	1	0.34364	1	0.48522	1	0.14577	1
6p loss	24 (8%)	263	0.35795	1	0.18351	1	0.017035	1	NA	NA	0.40581	1	0.78645	1	0.65885	1	0.34191	1	0.72131	1	0.66544	1	1	1
6q loss	64 (22%)	223	0.97336	1	0.50902	1	0.32278	1	0.017375	1	0.62277	1	0.29577	1	0.44149	1	0.46731	1	0.53583	1	0.77516	1	0.84568	1
7p loss	10 (3%)	277	0.81859	1	0.23567	1	1	1	NA	NA	0.4369	1	1	1	0.28281	1	0.44282	1	0.24577	1	0.50159	1	1	1
7q loss	11 (4%)	276	0.71574	1	0.19216	1	0.55574	1	NA	NA	0.019637	1	0.89342	1	0.6917	1	1	1	0.65307	1	0.53578	1	0.67865	1
8p loss	73 (25%)	214	0.58041	1	0.84709	1	1	1	0.14835	1	0.094564	1	0.11095	1	0.82596	1	0.78585	1	0.94644	1	0.78951	1	0.71115	1
8q loss	10 (3%)	277	0.30507	1	0.54715	1	0.75768	1	NA	NA	0.49174	1	0.67758	1	0.81367	1	0.12375	1	1	1	1	1	0.65418	1
9p loss	89 (31%)	198	0.0071603	1	0.063644	1	0.20299	1	0.85284	1	0.55771	1	0.23138	1	0.023925	1	0.8252	1	0.048298	1	1	1	0.47874	1
9q loss	74 (26%)	213	0.31651	1	0.37608	1	1	1	0.98416	1	0.28146	1	0.29298	1	0.17699	1	0.62493	1	0.36584	1	0.41928	1	0.85184	1
10p loss	23 (8%)	264	0.30548	1	0.6152	1	0.13201	1	NA	NA	0.32587	1	0.89792	1	0.48351	1	0.42509	1	0.8921	1	0.3801	1	1	1
10q loss	25 (9%)	262	0.33518	1	0.16927	1	1	1	NA	NA	0.0011886	0.976	0.32519	1	0.10235	1	1	1	0.15904	1	0.38914	1	1	1
11p loss	22 (8%)	265	0.16364	1	0.0045772	1	0.82453	1	0.57249	1	0.39904	1	0.97651	1	0.062945	1	0.042721	1	0.035969	1	1	1	1	1
11q loss	18 (6%)	269	0.16219	1	0.57154	1	1	1	0.3439	1	0.53996	1	1	1	0.73978	1	0.034288	1	0.8995	1	0.3381	1	0.16771	1
12p loss	25 (9%)	262	0.35398	1	0.78248	1	0.83715	1	0.57249	1	0.10764	1	0.60282	1	1	1	0.3087	1	0.53941	1	0.67535	1	0.3915	1
12q loss	18 (6%)	269	0.071104	1	0.87846	1	0.4679	1	NA	NA	0.079639	1	0.5156	1	0.37538	1	0.36638	1	0.29868	1	0.61826	1	1	1
13q loss	65 (23%)	222	0.15715	1	0.24869	1	0.26037	1	0.027286	1	0.38132	1	0.87616	1	0.11813	1	0.41399	1	0.34804	1	0.77653	1	0.43654	1
14q loss	27 (9%)	260	0.56535	1	0.96441	1	0.54843	1	0.66644	1	0.13865	1	0.78547	1	1	1	0.28045	1	0.79957	1	0.40324	1	0.15429	1
15q loss	64 (22%)	223	0.75837	1	0.04504	1	0.39357	1	0.88916	1	0.07992	1	0.75173	1	1	1	0.93389	1	0.90619	1	0.77516	1	0.43144	1
16p loss	22 (8%)	265	0.88146	1	0.31563	1	0.82453	1	NA	NA	0.49472	1	1	1	0.94871	1	0.003802	1	0.058597	1	0.16915	1	0.75692	1
16q loss	40 (14%)	247	0.066621	1	0.23462	1	0.61124	1	0.8251	1	0.1164	1	0.20745	1	0.52388	1	0.1071	1	0.21548	1	0.73571	1	0.81297	1
17p loss	75 (26%)	212	0.49126	1	0.621	1	0.68855	1	0.1556	1	0.90017	1	0.31555	1	0.37198	1	0.64004	1	0.29166	1	0.17384	1	0.7098	1
17q loss	12 (4%)	275	0.1525	1	0.95753	1	1	1	NA	NA	0.57956	1	0.53203	1	0.64838	1	0.75111	1	0.45867	1	1	1	0.09391	1
18p loss	47 (16%)	240	0.53517	1	0.035853	1	0.87409	1	0.009998	1	0.2877	1	0.29442	1	0.47595	1	0.035192	1	0.0080546	1	0.33084	1	0.66468	1
18q loss	73 (25%)	214	0.0080718	1	0.23975	1	1	1	0.52851	1	0.47098	1	0.1211	1	0.30609	1	0.20288	1	0.0033134	1	0.17311	1	0.57252	1
19p loss	81 (28%)	206	0.044654	1	0.29179	1	0.012386	1	0.75795	1	0.59469	1	0.16817	1	0.018973	1	0.080076	1	0.14083	1	1	1	0.27509	1
19q loss	44 (15%)	243	0.092225	1	0.39566	1	0.41256	1	NA	NA	0.13422	1	0.28011	1	0.38139	1	0.045689	1	0.31298	1	0.50723	1	0.82422	1
20p loss	42 (15%)	245	0.087532	1	0.35332	1	0.86774	1	NA	NA	0.29895	1	0.22717	1	0.029264	1	0.19832	1	0.074734	1	0.74711	1	0.81712	1
20q loss	14 (5%)	273	0.091997	1	0.27147	1	0.78942	1	NA	NA	0.2866	1	0.92317	1	0.54639	1	0.39195	1	0.39348	1	1	1	0.70287	1
21q loss	42 (15%)	245	0.84752	1	0.70724	1	0.029516	1	0.09161	1	0.57518	1	0.88458	1	0.72881	1	0.83085	1	0.78294	1	0.49681	1	1	1
22q loss	64 (22%)	223	0.9972	1	0.12554	1	0.065952	1	0.4994	1	0.79555	1	0.74054	1	0.89986	1	0.18264	1	0.97271	1	0.14997	1	1	1
Xq loss	6 (2%)	281	0.32655	1	0.098679	1	1	1	NA	NA	0.0094619	1	0.57555	1	0.83994	1	0.53842	1	0.81581	1	0.05317	1	1	1