Broad GDAC Analyses Status
analyses__2012_10_24__cesc Run for Tumor Type: CESC

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
CESC122321020122000122036

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_Clusters00010
2Aggregate_Gene_Status00010
3CoMut2.000010
4CopyNumber_Clustering_CNMF00010
5CopyNumber_GeneBySample00010
6CopyNumber_Gistic200010
7CopyNumber_Gistic2_Postprocess_Focal00010
8Correlate_Clinical_vs_CopyNumber_Arm00010
9Correlate_Clinical_vs_CopyNumber_Focal00010
10Correlate_Clinical_vs_Methylation10000
11Correlate_Clinical_vs_miR10000
12Correlate_Clinical_vs_miRseq00010
13Correlate_Clinical_vs_Molecular_Signatures00010
14Correlate_Clinical_vs_mRNA10000
15Correlate_Clinical_vs_mRNAseq10000
16Correlate_Clinical_vs_Mutation00010
17Correlate_Clinical_vs_RPPA10000
18Correlate_CopyNumber_vs_miR10000
19Correlate_CopyNumber_vs_mRNA10000
20Correlate_CopyNumber_vs_mRNAseq10000
21Correlate_Methylation_vs_mRNA10000
22GenerateStickFigures2.000010
23GenerateStickFiguresS2N00010
24Methylation_Clustering_CNMF00010
25Methylation_Preprocess00010
26miR_Clustering_CNMF10000
27miR_Clustering_Consensus10000
28miR_FindDirectTargets10000
29miR_Preprocess10000
30miRseq_Clustering_CNMF00010
31miRseq_Clustering_Consensus00010
32miRseq_Preprocess00010
33mRNA_Clustering_CNMF10000
34mRNA_Clustering_Consensus10000
35mRNA_Preprocess_Median10000
36mRNAseq_Clustering_CNMF10000
37mRNAseq_Clustering_Consensus10000
38mRNAseq_Preprocess10000
39Mutation_Assessor00010
40MutSigNozzleReport2.000010
41MutSigNozzleReportS2N00010
42MutSigPreprocess2.000010
43MutSigRun2.000010
44MutSigRunS2N00010
45Pathway_FindEnrichedGenes10000
46Pathway_Paradigm_Expression10000
47Pathway_Paradigm_Expression_CopyNumber10000
48ProcessCoverageForMutSig2.000010
49RPPA_Clustering_CNMF10000
50RPPA_Clustering_Consensus10000
Total2400260

This table generated on Tue Nov 20 23:38:27 2012