Broad GDAC Analyses Status
analyses__2012_10_24__hnsc Run for Tumor Type: HNSC

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
HNSC32831529496310030303092120

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_Clusters00010
2Aggregate_Gene_Status10000
3CoMut2.010000
4CopyNumber_Clustering_CNMF10000
5CopyNumber_GeneBySample00010
6CopyNumber_Gistic210000
7CopyNumber_Gistic2_Postprocess_Focal10000
8Correlate_Clinical_vs_CopyNumber_Arm10000
9Correlate_Clinical_vs_CopyNumber_Focal10000
10Correlate_Clinical_vs_Methylation00010
11Correlate_Clinical_vs_miR10000
12Correlate_Clinical_vs_miRseq00010
13Correlate_Clinical_vs_Molecular_Signatures00010
14Correlate_Clinical_vs_mRNA10000
15Correlate_Clinical_vs_mRNAseq00010
16Correlate_Clinical_vs_Mutation10000
17Correlate_Clinical_vs_RPPA00010
18Correlate_CopyNumber_vs_miR10000
19Correlate_CopyNumber_vs_mRNA10000
20Correlate_CopyNumber_vs_mRNAseq10000
21Correlate_Methylation_vs_mRNA00010
22GenerateStickFigures2.010000
23GenerateStickFiguresS2N10000
24Methylation_Clustering_CNMF00010
25Methylation_Preprocess00010
26miR_Clustering_CNMF10000
27miR_Clustering_Consensus10000
28miR_FindDirectTargets10000
29miR_Preprocess10000
30miRseq_Clustering_CNMF00010
31miRseq_Clustering_Consensus00010
32miRseq_Preprocess00010
33mRNA_Clustering_CNMF10000
34mRNA_Clustering_Consensus10000
35mRNA_Preprocess_Median10000
36mRNAseq_Clustering_CNMF00010
37mRNAseq_Clustering_Consensus00010
38mRNAseq_Preprocess00010
39Mutation_Assessor10000
40MutSigNozzleReport2.010000
41MutSigNozzleReportS2N10000
42MutSigPreprocess2.010000
43MutSigRun2.010000
44MutSigRunS2N10000
45Pathway_FindEnrichedGenes10000
46Pathway_Paradigm_Expression10000
47Pathway_Paradigm_Expression_CopyNumber10000
48ProcessCoverageForMutSig2.010000
49RPPA_Clustering_CNMF00010
50RPPA_Clustering_Consensus00010
Total3200180

This table generated on Tue Nov 20 23:38:28 2012