Broad GDAC analyses__2012_10_24__thca Run Status : THCA

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
THCA	435	218	330	94	353	0	254	0	349	224	323

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	Aggregate_Gene_Status	0	1
3	CoMut2.0	0	1
4	CopyNumber_Clustering_CNMF	0	1
5	CopyNumber_Clustering_CNMF_armlevel	0	1
6	CopyNumber_GeneBySample	0	1
7	CopyNumber_Gistic2	0	1
8	CopyNumber_Gistic2_Postprocess_Focal	0	1
9	Correlate_Clinical_vs_CopyNumber_Arm	0	1
10	Correlate_Clinical_vs_CopyNumber_Focal	0	1
11	Correlate_Clinical_vs_Methylation	0	1
12	Correlate_Clinical_vs_miR	1	0
13	Correlate_Clinical_vs_miRseq	0	1
14	Correlate_Clinical_vs_Molecular_Signatures	0	1
15	Correlate_Clinical_vs_mRNA	1	0
16	Correlate_Clinical_vs_mRNAseq	0	1
17	Correlate_Clinical_vs_Mutation	0	1
18	Correlate_Clinical_vs_RPPA	0	1
19	Correlate_CopyNumber_vs_miR	1	0
20	Correlate_CopyNumber_vs_mRNA	1	0
21	Correlate_CopyNumber_vs_mRNAseq	0	1
22	Correlate_Methylation_vs_mRNA	0	1
23	GenerateStickFigures2.0	0	1
24	GenerateStickFiguresS2N	0	1
25	Methylation_Clustering_CNMF	0	1
26	Methylation_Preprocess	0	1
27	miR_Clustering_CNMF	1	0
28	miR_Clustering_Consensus	1	0
29	miR_FindDirectTargets	1	0
30	miR_Preprocess	1	0
31	miRseq_Clustering_CNMF	0	1
32	miRseq_Clustering_Consensus	0	1
33	miRseq_Preprocess	0	1
34	mRNA_Clustering_CNMF	1	0
35	mRNA_Clustering_Consensus	1	0
36	mRNA_Preprocess_Median	1	0
37	mRNAseq_Clustering_CNMF	0	1
38	mRNAseq_Clustering_Consensus	0	1
39	mRNAseq_Preprocess	0	1
40	Mutation_Assessor	0	1
41	MutSigNozzleReport2.0	0	1
42	MutSigNozzleReportS2N	0	1
43	MutSigPreprocess2.0	0	1
44	MutSigRun2.0	0	1
45	MutSigRunS2N	0	1
46	Pathway_FindEnrichedGenes	1	0
47	Pathway_Paradigm_Expression	1	0
48	Pathway_Paradigm_Expression_CopyNumber	1	0
49	ProcessCoverageForMutSig2.0	0	1
50	RPPA_Clustering_CNMF	0	1
51	RPPA_Clustering_Consensus	0	1
	Total	14	37

This table generated on Tue Nov 20 23:38:30 2012

Broad GDAC Analyses Status analyses__2012_10_24__thca Run for Tumor Type: THCA

Broad GDAC Analyses Status
analyses__2012_10_24__thca Run for Tumor Type: THCA