
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BLCA/2020023/1.GDAC_mergedClustering.Finished/BLCA.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1971848/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=102, in cluster file=127, common to both=102
[1]   8 102
[1] "CN_CNMF"
[1] 3
 1  2  3 
27 41 20 
 1  2  3 
27 41 20 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
32 36 34 
 1  2  3 
32 36 34 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
12 10 14 17 
 1  2  3  4 
12 10 14 17 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
14 17 22 
 1  2  3 
14 17 22 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
35 17 25 10 
 1  2  3  4 
35 17 25 10 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
25 42 20 
 1  2  3 
25 42 20 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
22 52 26 
 1  2  3 
22 52 26 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
21 67 12 
 1  2  3 
21 67 12 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 102 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
          NA           NA           NA           NA           NA          179 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 
         111           NA           NA           59           88           61 
TCGA-C4-A0F7 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A3MG TCGA-CF-A3MH 
          NA           14           13           21           NA           NA 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 
          NA           NA          219          166          158           77 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
          NA          955          273          214          271         3616 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
        3056          218          178          202           55          322 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
          NA         2291           67          121          238          319 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
        1151          168           NA         1108          268          253 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
          NA          209           NA          336          272          242 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
         974          334           NA          138           NA           NA 
TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
          59           71          417         1884          806          172 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
          NA          997          525          214           NA           25 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
          68          234           64           95          177          133 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QG TCGA-GV-A3QH 
         160          187          173          232           NA          237 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-HQ-A2OE TCGA-K4-A3WS TCGA-K4-A3WV 
         125           46          204           NA          265          141 
Variable 1:'AGE':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=67,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 102 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=42, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 18  7
  subtype2 27 13
  subtype3 13  6
subtype1 subtype2 subtype3 
      25       40       19 
subtype1 subtype2 subtype3 
       7       13        6 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A3PH 
       12.79         2.66        26.10        14.89         5.06         4.64 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A2I1 
        7.20         5.46         2.14        31.40         8.98        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-E5-A2PC TCGA-FT-A3EE TCGA-G2-A3IE 
       75.32         2.20         7.82        36.43         2.33        20.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        5.82         4.37         5.26         5.69         7.79         4.11 
TCGA-H4-A2HQ 
        6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F6 
       17.85        19.46         8.61         8.25         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB 
        0.46         0.69         4.90         2.53         7.04         8.91 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        7.17         5.85         6.64        10.49        37.84         5.52 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.32         8.94         4.01        11.05         7.96        32.02 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-H4-A2HO 
        2.24         2.10         3.12         1.51 

$subtype3
TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-CF-A1HS 
        5.06         8.35         5.88         3.65         8.98         0.43 
TCGA-CU-A0YN TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL 
       12.30       118.88       100.47         1.81         7.76         3.98 
TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-G2-A2EF TCGA-GD-A2C5 
        9.67         8.81         6.87         8.94        61.94         7.69 
TCGA-GV-A3JX 
        6.15 

subtype1 subtype2 subtype3 
    2.14     0.46     0.43 
subtype1 subtype2 subtype3 
   75.32    37.84   118.88 
subtype1 subtype2 subtype3 
    6.71     7.25     7.76 
[1] "2.1 - 75.3 (6.7)"  "0.5 - 37.8 (7.2)"  "0.4 - 118.9 (7.8)"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[61] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[61] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[61] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1  7 20
  subtype2 11 30
  subtype3  9 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   20
  subtype2   11   30
  subtype3    9   11
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        7       11        9
  MALE         20       30       11
D1V4, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 24  7
  subtype2 21 14
  subtype3 23  9
subtype1 subtype2 subtype3 
      31       35       32 
subtype1 subtype2 subtype3 
       7       14        9 
$subtype1
TCGA-BL-A0C8 TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       12.79         5.06         8.35         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AC 
        8.98         2.01         5.19         2.53         8.98       118.88 
TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3NA 
      100.47        10.59         2.20         5.52        36.43        32.02 
TCGA-FD-A3SL TCGA-FD-A3SR TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IE TCGA-G2-A3VY 
       10.98        19.79         5.65        26.93        20.12         0.82 
TCGA-GD-A2C5 TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.69         5.69         7.63         7.79         1.51         6.71 
TCGA-K4-A3WV 
        4.64 

$subtype2
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20U 
        7.33         6.58        11.93        19.00        12.16         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-CF-A1HR TCGA-CF-A1HS 
        5.06         8.25         1.94         2.89         0.46         0.43 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A1AF 
       12.30         4.90         7.20         5.46         8.91         5.85 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-FD-A3B3 TCGA-FD-A3B4 
        7.76        75.32         7.82        10.49         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3SO TCGA-FD-A3SP 
        8.94         6.87         4.01        11.05         5.49         4.54 
TCGA-FD-A3SQ TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GD-A3OS TCGA-K4-A3WS 
       46.78        61.94        26.50         5.82         8.71 

$subtype3
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
        2.66         6.74        26.10        17.85        19.46        14.89 
TCGA-C4-A0F7 TCGA-CF-A27C TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AE 
        2.04         0.69         2.14        31.40         7.04         7.17 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IV TCGA-FD-A3N5 
        6.64         1.81         3.98        37.84         9.67         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EC TCGA-G2-A2EO TCGA-G2-A2ES 
        7.96         1.94         2.33        13.71        32.78        17.26 
TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW 
        7.04         2.24         2.10         3.12         4.37         5.26 
TCGA-GV-A3JX TCGA-GV-A3QI 
        6.15         4.11 

subtype1 subtype2 subtype3 
    0.82     0.43     0.69 
subtype1 subtype2 subtype3 
  118.88    75.32    37.84 
subtype1 subtype2 subtype3 
    7.63     7.82     6.69 
[1] "0.8 - 118.9 (7.6)" "0.4 - 75.3 (7.8)"  "0.7 - 37.8 (6.7)" 
 [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[37] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[91] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[97] "subtype2" "subtype1"
 [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[37] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[91] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[97] "subtype2" "subtype1"
 [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[37] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[55] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[73] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[91] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[97] "subtype2" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 10 22
  subtype2 12 24
  subtype3  7 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   22
  subtype2   12   24
  subtype3    7   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       10       12        7
  MALE         22       24       27
D2V4, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  8  4
  subtype2  5  5
  subtype3 11  2
  subtype4  8  9
subtype1 subtype2 subtype3 subtype4 
      12       10       13       17 
subtype1 subtype2 subtype3 subtype4 
       4        5        2        9 
$subtype1
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-C4-A0EZ TCGA-CU-A0YN TCGA-FD-A3B3 TCGA-FD-A3B4 
       12.79         6.58         8.98        12.30         8.81         8.32 
TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-H4-A2HQ 
       13.71        61.94        26.50         5.65        26.93         6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W TCGA-C4-A0F0 
        7.33         2.66         5.06         8.61         8.35         1.94 
TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A2HX 
        2.53       100.47         5.85         1.81 

$subtype3
TCGA-BT-A0YX TCGA-BT-A20Q TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
       11.93        19.46         2.89         2.01         0.46         0.69 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-GD-A2C5 
        2.14         7.04         8.91         6.64        10.59         7.69 
TCGA-H4-A2HO 
        1.51 

$subtype4
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20V 
       19.00        26.10        12.16        17.85        14.89         5.06 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F7 TCGA-CF-A1HS TCGA-DK-A1A6 TCGA-DK-A1AC 
        8.25         5.88         2.04         0.43        31.40       118.88 
TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-E5-A2PC TCGA-G2-A2EO TCGA-G2-A2ES 
        7.17         7.76        36.43        32.78        17.26 

subtype1 subtype2 subtype3 subtype4 
    5.65     1.81     0.46     0.43 
subtype1 subtype2 subtype3 subtype4 
   61.94   100.47    19.46   118.88 
subtype1 subtype2 subtype3 subtype4 
  10.640    5.455    6.640   14.890 
[1] "5.7 - 61.9 (10.6)"  "1.8 - 100.5 (5.5)"  "0.5 - 19.5 (6.6)"  
[4] "0.4 - 118.9 (14.9)"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1  6  6
  subtype2  5  5
  subtype3  5  9
  subtype4  5 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6    6
  subtype2    5    5
  subtype3    5    9
  subtype4    5   12
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        6        5        5        5
  MALE          6        5        9       12
D3V4, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype1 subtype2 subtype3 subtype4 
       5        1        1        4 
[1] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[8] "subtype4" "subtype4"

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1  9  5
  subtype2  7 10
  subtype3 16  5
subtype1 subtype2 subtype3 
      14       17       21 
subtype1 subtype2 subtype3 
       5       10        5 
$subtype1
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A20W TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YN 
        7.33         6.58         8.35         8.98         1.94        12.30 
TCGA-DK-A1AF TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ 
        5.85         8.81         8.32        13.71        61.94        26.50 
TCGA-G2-A2EK TCGA-H4-A2HQ 
        5.65         6.71 

$subtype2
TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20T 
        2.66        19.00        26.10        12.16         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-CF-A1HS TCGA-DK-A1A3 TCGA-DK-A1AC 
        8.61         5.06         8.25         0.43         2.53       118.88 
TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-E5-A2PC TCGA-G2-A2ES 
        7.17         1.81         7.76        36.43        17.26 

$subtype3
TCGA-BL-A0C8 TCGA-BT-A0YX TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A2LA TCGA-C4-A0F1 
       12.79        11.93        17.85        19.46         5.88         2.89 
TCGA-C4-A0F6 TCGA-C4-A0F7 TCGA-CF-A1HR TCGA-CF-A27C TCGA-DK-A1A5 TCGA-DK-A1A6 
        2.01         2.04         0.46         0.69         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-G2-A2EL 
        7.04         8.91       100.47         6.64        10.59        26.93 
TCGA-G2-A2EO TCGA-GD-A2C5 TCGA-H4-A2HO 
       32.78         7.69         1.51 

subtype1 subtype2 subtype3 
    1.94     0.43     0.46 
subtype1 subtype2 subtype3 
   61.94   118.88   100.47 
subtype1 subtype2 subtype3 
   8.335    8.250    7.690 
[1] "1.9 - 61.9 (8.3)"  "0.4 - 118.9 (8.2)" "0.5 - 100.5 (7.7)"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1  8  6
  subtype2  7 10
  subtype3  6 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    6
  subtype2    7   10
  subtype3    6   16
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        8        7        6
  MALE          6       10       16
D4V4, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 23  9
  subtype2  9  8
  subtype3 19  6
  subtype4  7  2
subtype1 subtype2 subtype3 subtype4 
      32       17       25        9 
subtype1 subtype2 subtype3 subtype4 
       9        8        6        2 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W 
       12.79         2.66        17.85        19.46        14.89         8.35 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        4.64         2.01         0.46         0.69         4.90         7.20 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A1AG TCGA-DK-A3IK 
       31.40         8.98         7.04       100.47         6.64         2.20 
TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IV TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EC 
        3.98        37.84         9.67        32.02         2.33        13.71 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GV-A3JV 
        5.65        32.78        20.12         7.69         2.10         4.37 
TCGA-GV-A3JW TCGA-H4-A2HO 
        5.26         1.51 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20V TCGA-BT-A2LA TCGA-DK-A1AC TCGA-G2-A2EF TCGA-G2-A2EL TCGA-GD-A3OS 
        5.06         5.88       118.88        61.94        26.93         5.82 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        6.15         5.69         7.79         4.11         6.71 

$subtype3
TCGA-BT-A0YX TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
       11.93         8.61         8.25         1.94         0.43        12.30 
TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         8.91         7.17         7.76        75.32         7.82 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 
        8.94         7.96        26.50        17.26         7.04         2.24 
TCGA-GD-A3OQ 
        3.12 

$subtype4
TCGA-BT-A20R TCGA-BT-A2LD TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AF TCGA-DK-A2HX 
        5.06         3.65         2.53         2.14         5.85         1.81 
TCGA-DK-A2I1 TCGA-DK-A3IT TCGA-FD-A3B8 
       10.59         5.52        11.05 

subtype1 subtype2 subtype3 subtype4 
    0.46     4.11     0.43     1.81 
subtype1 subtype2 subtype3 subtype4 
  100.47   118.88    75.32    11.05 
subtype1 subtype2 subtype3 subtype4 
    7.12     6.74     8.25     5.06 
[1] "0.5 - 100.5 (7.1)" "4.1 - 118.9 (6.7)" "0.4 - 75.3 (8.2)" 
[4] "1.8 - 11.1 (5.1)" 
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1  8 27
  subtype2  4 13
  subtype3 10 15
  subtype4  5  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   27
  subtype2    4   13
  subtype3   10   15
  subtype4    5    5
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8        4       10        5
  MALE         27       13       15        5
D5V4, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
      10        7        6        1 
 [1] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 19  6
  subtype2 29 10
  subtype3 10  9
subtype1 subtype2 subtype3 
      25       39       19 
subtype1 subtype2 subtype3 
       6       10        9 
$subtype1
TCGA-BT-A0YX TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
       11.93         8.61         8.25         1.94         0.43        12.30 
TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         8.91         7.17         7.76        75.32         7.82 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB 
        8.94         7.96        61.94        26.50        17.26         7.04 
TCGA-GC-A3I6 
        2.24 

$subtype2
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W 
       12.79         2.66        17.85        19.46        14.89         8.35 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        4.64         2.01         0.46         0.69         4.90         7.20 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A1AG 
        2.14        31.40         8.98         7.04       100.47         6.64 
TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
       10.59         2.20         3.98        37.84         5.52         9.67 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EC TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IE 
       32.02         2.33        13.71         5.65        32.78        20.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        7.69         2.10         3.12         4.37         5.26         6.15 
TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         1.51         6.71 

$subtype3
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A2LD TCGA-DK-A1A3 TCGA-DK-A1AC 
        5.06         5.06         5.88         3.65         2.53       118.88 
TCGA-DK-A1AF TCGA-DK-A2HX TCGA-FD-A3B8 TCGA-G2-A2EL TCGA-GD-A3OS TCGA-GV-A3JZ 
        5.85         1.81        11.05        26.93         5.82         5.69 
TCGA-GV-A3QI 
        4.11 

subtype1 subtype2 subtype3 
    0.43     0.46     1.81 
subtype1 subtype2 subtype3 
   75.32   100.47   118.88 
subtype1 subtype2 subtype3 
    8.32     6.71     5.88 
[1] "0.4 - 75.3 (8.3)"  "0.5 - 100.5 (6.7)" "1.8 - 118.9 (5.9)"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 10 15
  subtype2 10 32
  subtype3  7 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   15
  subtype2   10   32
  subtype3    7   13
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       10       10        7
  MALE         15       32       13
D6V4, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 16  3
  subtype2 31 20
  subtype3 19  7
subtype1 subtype2 subtype3 
      19       51       26 
subtype1 subtype2 subtype3 
       3       20        7 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20W TCGA-BT-A2LD TCGA-CU-A0YR 
       12.79         2.66        11.93         8.35         3.65         7.20 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IT 
        2.14       118.88        10.59        75.32         2.20         5.52 
TCGA-FD-A3SS TCGA-G2-A3VY TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF TCGA-H4-A2HO 
        1.94         0.82         4.37         6.15         7.63         1.51 
TCGA-H4-A2HQ 
        6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH 
       17.85         8.61         5.06         8.25         5.88         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-C4-A0F7 TCGA-CF-A1HS 
        8.98         1.94         2.89         2.01         2.04         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        0.69        12.30         5.46        31.40         8.98         7.04 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B5 
        6.64         7.76         7.82        37.84        36.43         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SO 
        6.87         4.01         8.94         7.96        32.02         5.49 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        2.33        61.94        26.50        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW 
        7.04        20.12         2.24         3.12         5.82         5.26 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-K4-A3WV 
        7.79         4.11         4.64 

$subtype3
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-CF-A1HR TCGA-CU-A0YO TCGA-DK-A1A3 
       19.46         5.06        14.89         0.46         4.90         2.53 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A3IL 
        8.91       100.47         7.17         5.85         1.81         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B8 TCGA-FD-A3SL 
       10.49         9.67         8.81         8.32        11.05        10.98 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EC TCGA-G2-A2EK TCGA-GD-A2C5 
        4.54        46.78        19.79        13.71         5.65         7.69 
TCGA-GD-A3OP TCGA-K4-A3WS 
        2.10         8.71 

subtype1 subtype2 subtype3 
    0.82     0.43     0.46 
subtype1 subtype2 subtype3 
  118.88    61.94   100.47 
subtype1 subtype2 subtype3 
   6.150    7.330    8.515 
[1] "0.8 - 118.9 (6.2)" "0.4 - 61.9 (7.3)"  "0.5 - 100.5 (8.5)"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1  4 18
  subtype2 15 37
  subtype3 10 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   18
  subtype2   15   37
  subtype3   10   16
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        4       15       10
  MALE         18       37       16
D7V4, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 14  4
  subtype2 44 22
  subtype3  8  4
subtype1 subtype2 subtype3 
      18       66       12 
subtype1 subtype2 subtype3 
       4       22        4 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20W TCGA-BT-A2LD TCGA-CU-A0YR 
       12.79         2.66        11.93         8.35         3.65         7.20 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IT 
        2.14       118.88        10.59        75.32         2.20         5.52 
TCGA-FD-A3SO TCGA-FT-A3EE TCGA-GV-A3JV TCGA-GV-A3QF TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.49         2.33         4.37         7.63         1.51         6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
       17.85        19.46         8.61         5.06         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-C4-A0F7 
        4.64         8.98         1.94         2.89         2.01         2.04 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.46         0.43         0.69        12.30         4.90         5.46 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IV 
        5.85         6.64         7.76         7.82        37.84         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SP 
       11.05         8.94         7.96        32.02        10.98         4.54 
TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       13.71        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI TCGA-K4-A3WV 
        3.12         5.82         5.26         7.79         4.11         4.64 

$subtype3
TCGA-BT-A20R TCGA-BT-A20T TCGA-DK-A1A3 TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3IQ 
        5.06        14.89         2.53         1.81         3.98        10.49 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A3VY TCGA-GV-A3JX TCGA-K4-A3WS 
       46.78        19.79         1.94         0.82         6.15         8.71 

subtype1 subtype2 subtype3 
    1.51     0.43     0.82 
subtype1 subtype2 subtype3 
  118.88   100.47    46.78 
subtype1 subtype2 subtype3 
   6.115    7.775    5.605 
[1] "1.5 - 118.9 (6.1)" "0.4 - 100.5 (7.8)" "0.8 - 46.8 (5.6)" 
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[49] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[91] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  5 16
  subtype2 21 46
  subtype3  3  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   16
  subtype2   21   46
  subtype3    3    9
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5       21        3
  MALE         16       46        9
D8V4, continuous
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
> q(save="no")
