# Created: Thu Nov 08 12:49:22 EST 2012 by cgaadm_deadline
# Job: 222350    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:36
# Parameters: 
#    bar_plot = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.bargraphs.png
#    breakdown_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.mutation_breakdown.txt
#    categories_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.mutation_rates.txt
#    coverage.png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.covplot.png
#    sig_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.sig_genes.txt
#    cosmic_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.cosmic_sig_genes.txt
#    cosmic_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.cosmic_sig_genes2.txt
#    cosmic_muts_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.cosmic_mutations.txt
#    cluster_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.clustered_muts.txt
#    geneset_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.sig_genesets.txt
#    genset_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.sig_genesets_2.txt
#    patients_c_and_r = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.patients.counts_and_rates.txt
#    ind_set = BRCA
#    mutsig_version = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.MutSig_version.txt
#    coMut_plot_png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/BRCA/2008310/0.CoMut.Finished/BRCA_coMut.png
#    coMut_plot_pdf = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/BRCA/2008310/0.CoMut.Finished/BRCA_coMut.pdf
#    stick_figures_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GenerateStickFigures/BRCA/2008336/0.GenerateStickFigures.Finished/generatedStickFigurePaths.txt
#    maf_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.final_analysis_set.maf
#    mut_pre_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA/1909972/0.MutSigPreprocess.Finished/BRCA.mutation_preprocessing_report.txt
#    mut_filt_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BRCA/1912030/0.MutSigRun.Finished/BRCA.mutation_filtering_report.txt
