
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/KIRP/2008598/0.GDAC_MethylationPreprocess.Finished/KIRP.meth.for_clustering.filtered_data.txt", "-u7836", "-ooutputprefix")
Cluster size 7836 broken into 3630 4206 
Cluster size 3630 broken into 1915 1715 
Cluster size 1915 broken into 705 1210 
Done cluster 705 
Done cluster 1210 
Done cluster 1915 
Cluster size 1715 broken into 1369 346 
Done cluster 1369 
Done cluster 346 
Done cluster 1715 
Done cluster 3630 
Cluster size 4206 broken into 2270 1936 
Cluster size 2270 broken into 773 1497 
Done cluster 773 
Done cluster 1497 
Done cluster 2270 
Cluster size 1936 broken into 1126 810 
Done cluster 1126 
Done cluster 810 
Done cluster 1936 
Done cluster 4206 
> q(save="no")
