
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LAML/2012957/1.GDAC_mergedClustering.Finished/LAML.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LAML/1971858/1.GDAC_clinicalDataPicker.Finished/LAML.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=200, in cluster file=197, common to both=197
[1]   5 197
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
72 45 65 12 
 1  2  3  4 
72 45 65 12 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
74 57 48 
 1  2  3 
74 57 48 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2 
 61 118 
  1   2 
 61 118 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
86 40 61 
 1  2  3 
86 40 61 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
38 82 67 
 1  2  3 
38 82 67 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                     "DAYSTODEATH"                     
 [3] "DAYSTOLASTFOLLOWUP"               "VITALSTATUS"                     
 [5] "DCCUPLOADDATE"                    "PRIMARYSITEOFDESEASE"            
 [7] "GENDER"                           "DATEOFINITIALPATHOLOGICDIAGNOSIS"
 [9] "DAYSTOLASTKNOWNALIVE"             "KARNOFSKYPERFORMANCESCORE"       
[11] "BATCHNUMBER"                     

Input Data has 11 rows and 197 columns.

[1] "Batch" "11"   
[1] "Last Follow UP"
TCGA-AB-2802 TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 
          NA           NA         2556           NA           NA           NA 
TCGA-AB-2808 TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2813 
        2861           NA           NA           NA           NA           NA 
TCGA-AB-2814 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2817 TCGA-AB-2818 TCGA-AB-2819 
          NA           NA           NA           NA           NA         2496 
TCGA-AB-2820 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2823 TCGA-AB-2824 TCGA-AB-2825 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2828 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 
          NA           NA         2284           NA           NA           NA 
TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2837 
          NA           NA           NA         1673           NA           NA 
TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2842 TCGA-AB-2843 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2844 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2847 TCGA-AB-2848 TCGA-AB-2849 
          NA           NA           NA           NA           NA         2220 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2857 
          NA           NA           NA           NA           NA           NA 
TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2861 TCGA-AB-2862 TCGA-AB-2863 
          NA           NA           NA           NA         1430           NA 
TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2870 
          NA           NA           NA           NA          243           NA 
TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2873 TCGA-AB-2874 TCGA-AB-2875 TCGA-AB-2876 
         153          638          273          396          212         1219 
TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2882 
         638           NA          245          424          393           NA 
TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2887 TCGA-AB-2888 
         730           NA           NA          181           NA          334 
TCGA-AB-2889 TCGA-AB-2890 TCGA-AB-2891 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2894 
         304           NA           NA          942           NA           NA 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2900 
          NA           NA          243          393           NA           NA 
TCGA-AB-2901 TCGA-AB-2903 TCGA-AB-2904 TCGA-AB-2906 TCGA-AB-2907 TCGA-AB-2908 
          58           NA           NA          577           NA           NA 
TCGA-AB-2909 TCGA-AB-2910 TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2914 
          30           NA         1186           NA         1216          792 
TCGA-AB-2915 TCGA-AB-2916 TCGA-AB-2917 TCGA-AB-2918 TCGA-AB-2919 TCGA-AB-2920 
          NA          882         1216           NA           61           NA 
TCGA-AB-2921 TCGA-AB-2922 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2926 
          NA           NA           NA           90           NA           NA 
TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2930 TCGA-AB-2931 TCGA-AB-2932 
          NA           59           NA           NA           NA           NA 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
          NA           28           NA           59           NA           NA 
TCGA-AB-2939 TCGA-AB-2940 TCGA-AB-2941 TCGA-AB-2942 TCGA-AB-2943 TCGA-AB-2944 
         455           NA           NA          641           NA           NA 
TCGA-AB-2945 TCGA-AB-2946 TCGA-AB-2947 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 
          NA           NA           31           NA          699          306 
TCGA-AB-2952 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2956 TCGA-AB-2957 TCGA-AB-2959 
          NA         1492           NA           NA          608           NA 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2968 
          NA         1277           NA           NA         1035           NA 
TCGA-AB-2969 TCGA-AB-2970 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 
        1127           NA           NA           NA           NA           NA 
TCGA-AB-2975 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 
          NA           NA           NA          699          671          699 
TCGA-AB-2981 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
         487          149           NA         1156           NA           NA 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
          NA           NA           NA          457         1826           NA 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2997 TCGA-AB-2998 
          NA         1798         1551         1581           NA           NA 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3005 TCGA-AB-3006 
        1734         1249         1581           NA         2099           NA 
TCGA-AB-3007 TCGA-AB-3008 TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
        1581           NA           NA         1885         1887 
Variable 1:'AGE':	nDistinctValues=63,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=66,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 197 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=63, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = METHLYATION_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 18 45
  subtype2 29 13
  subtype3 12 42
  subtype4  4  6
subtype1 subtype2 subtype3 subtype4 
      63       42       54       10 
subtype1 subtype2 subtype3 subtype4 
      45       13       42        6 
$subtype1
TCGA-AB-2802 TCGA-AB-2809 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2816 
       12.00         2.04         1.02         7.99        12.03         8.05 
TCGA-AB-2818 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2827 TCGA-AB-2832 
        9.96         0.99         6.94        24.03         8.98        12.00 
TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2844 TCGA-AB-2848 
        8.05        55.00        17.00        15.98         3.98        14.96 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2855 TCGA-AB-2856 TCGA-AB-2866 TCGA-AB-2869 
        7.96         2.89         6.94         4.90         5.00         7.99 
TCGA-AB-2874 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2893 
       13.02        20.98         8.05        24.00        24.03         6.97 
TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2900 TCGA-AB-2911 TCGA-AB-2913 
        5.92         5.03         7.00         6.02        38.99        39.98 
TCGA-AB-2919 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2945 TCGA-AB-2947 
        2.01         1.02         2.96         7.96         7.99         1.02 
TCGA-AB-2956 TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 
        6.02        53.95        41.98        11.01        34.03        37.05 
TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2974 TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2981 
        0.99        20.02         3.02        30.08         0.99        16.01 
TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
       38.01         8.98         6.97         0.99        12.00        15.02 
TCGA-AB-2993 TCGA-AB-3006 TCGA-AB-3011 
       25.02        15.91        61.97 

$subtype2
TCGA-AB-2803 TCGA-AB-2804 TCGA-AB-2806 TCGA-AB-2808 TCGA-AB-2815 TCGA-AB-2819 
       26.04        84.03        31.04        94.06        26.99        82.06 
TCGA-AB-2828 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2845 TCGA-AB-2846 TCGA-AB-2858 
       75.09         0.92        46.06         9.96        46.09        18.94 
TCGA-AB-2862 TCGA-AB-2870 TCGA-AB-2872 TCGA-AB-2875 TCGA-AB-2880 TCGA-AB-2881 
       47.01         5.00        20.98         6.97        13.94        12.92 
TCGA-AB-2886 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2897 TCGA-AB-2906 
        5.95        10.98         9.99        30.97         7.99        18.97 
TCGA-AB-2909 TCGA-AB-2914 TCGA-AB-2937 TCGA-AB-2942 TCGA-AB-2950 TCGA-AB-2954 
        0.99        26.04         7.07        21.07        10.06        49.05 
TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2979 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2991 
       16.08        19.99        22.06        22.98         4.90        60.03 
TCGA-AB-2998 TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
        1.02        57.01        41.06        51.98        51.98        62.04 

$subtype3
TCGA-AB-2805 TCGA-AB-2807 TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2817 TCGA-AB-2821 
       18.94         5.92         1.02        26.04         8.98        26.99 
TCGA-AB-2822 TCGA-AB-2829 TCGA-AB-2830 TCGA-AB-2831 TCGA-AB-2838 TCGA-AB-2843 
       31.96         8.98         9.04        21.04        12.00         7.07 
TCGA-AB-2847 TCGA-AB-2854 TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2863 TCGA-AB-2867 
       19.96        12.03        10.06        14.01         1.02         6.05 
TCGA-AB-2868 TCGA-AB-2871 TCGA-AB-2873 TCGA-AB-2878 TCGA-AB-2882 TCGA-AB-2885 
        4.96         5.03         8.98        12.00        12.00         7.04 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2917 
       12.92        22.06         1.91        16.96         1.02        39.98 
TCGA-AB-2920 TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2933 
       12.03        14.99         2.93         1.94         4.04         4.01 
TCGA-AB-2934 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2938 TCGA-AB-2948 TCGA-AB-2949 
        0.92         1.97         1.94         9.96        19.07        22.98 
TCGA-AB-2952 TCGA-AB-2959 TCGA-AB-2968 TCGA-AB-2971 TCGA-AB-2978 TCGA-AB-2983 
        1.02        16.08        15.06        26.04        22.98        11.01 
TCGA-AB-2987 TCGA-AB-2992 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-3002 TCGA-AB-3005 
        6.05        56.09        50.99        51.98        47.05        69.01 

$subtype4
TCGA-AB-2833 TCGA-AB-2849 TCGA-AB-2876 TCGA-AB-2912 TCGA-AB-2916 TCGA-AB-2939 
       14.99        72.99        40.08         9.01        29.00        14.96 
TCGA-AB-2966 TCGA-AB-2970 TCGA-AB-3008 TCGA-AB-3009 
       28.08        10.03        27.02        18.94 

subtype1 subtype2 subtype3 subtype4 
    0.99     0.92     0.92     9.01 
subtype1 subtype2 subtype3 subtype4 
   61.97    94.06    69.01    72.99 
subtype1 subtype2 subtype3 subtype4 
   8.050   21.565   12.000   22.980 
[1] "1.0 - 62.0 (8.1)"  "0.9 - 94.1 (21.6)" "0.9 - 69.0 (12.0)"
[4] "9.0 - 73.0 (23.0)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[169] "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 35 37
  subtype2 24 21
  subtype3 26 39
  subtype4  4  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   37
  subtype2   24   21
  subtype3   26   39
  subtype4    4    8
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       35       24       26        4
  MALE         37       21       39        8

Clustering(2) Variable = MRNASEQ_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 28 39
  subtype2 18 32
  subtype3 14 26
subtype1 subtype2 subtype3 
      67       50       40 
subtype1 subtype2 subtype3 
      39       32       26 
$subtype1
TCGA-AB-2803 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2814 TCGA-AB-2817 
       26.04        31.04         5.92        94.06        26.04         8.98 
TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 TCGA-AB-2838 TCGA-AB-2843 TCGA-AB-2845 
       82.06        26.99        31.96        12.00         7.07         9.96 
TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2854 TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2860 
       19.96        72.99        12.03        10.06        18.94        14.01 
TCGA-AB-2863 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2872 TCGA-AB-2875 TCGA-AB-2876 
        1.02         6.05         4.96        20.98         6.97        40.08 
TCGA-AB-2878 TCGA-AB-2882 TCGA-AB-2883 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2898 
       12.00        12.00        24.00         7.04         5.95        12.92 
TCGA-AB-2899 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2917 
       22.06         1.91        16.96         1.02         0.99        39.98 
TCGA-AB-2927 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
        2.93         4.04         1.97         1.94         7.07         9.96 
TCGA-AB-2939 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 TCGA-AB-2955 TCGA-AB-2959 
       14.96        22.98        10.06         1.02        16.08        16.08 
TCGA-AB-2964 TCGA-AB-2966 TCGA-AB-2970 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 
       41.98        28.08        10.03        22.98        22.06        22.98 
TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2991 TCGA-AB-2992 TCGA-AB-2995 TCGA-AB-2996 
        4.90        11.01        60.03        56.09        50.99        51.98 
TCGA-AB-2999 TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       57.01        41.06        51.98        47.05        27.02        18.94 
TCGA-AB-3012 
       62.04 

$subtype2
TCGA-AB-2805 TCGA-AB-2813 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2824 
       18.94         1.02        26.99         8.05         9.96         0.99 
TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2828 TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 
        6.94        24.03        75.09        12.00        14.99         8.05 
TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2844 TCGA-AB-2846 TCGA-AB-2851 TCGA-AB-2856 
       55.00        17.00         3.98        46.09         7.96         4.90 
TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2870 TCGA-AB-2873 TCGA-AB-2880 TCGA-AB-2881 
        2.01         5.00         5.00         8.98        13.94        12.92 
TCGA-AB-2884 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 TCGA-AB-2900 
       24.03        10.98         9.99        30.97         6.97         6.02 
TCGA-AB-2911 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2924 TCGA-AB-2925 
       38.99         9.01        26.04        29.00         2.96         7.96 
TCGA-AB-2933 TCGA-AB-2934 TCGA-AB-2942 TCGA-AB-2948 TCGA-AB-2954 TCGA-AB-2956 
        4.01         0.92        21.07        19.07        49.05         6.02 
TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2973 TCGA-AB-2981 TCGA-AB-2985 
       11.01        34.03        37.05        20.02        16.01         8.98 
TCGA-AB-2987 TCGA-AB-3005 
        6.05        69.01 

$subtype3
TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2830 TCGA-AB-2839 TCGA-AB-2840 
        1.02         7.99        12.03         9.04        15.98         0.92 
TCGA-AB-2841 TCGA-AB-2848 TCGA-AB-2853 TCGA-AB-2855 TCGA-AB-2859 TCGA-AB-2862 
       46.06        14.96         2.89         6.94         9.96        47.01 
TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2874 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2894 
        7.99         5.03        13.02        20.98         8.05         5.92 
TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 TCGA-AB-2913 TCGA-AB-2919 TCGA-AB-2920 
        5.03         7.00         7.99        39.98         2.01        12.03 
TCGA-AB-2928 TCGA-AB-2963 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2976 TCGA-AB-2977 
        1.94        53.95        26.04         0.99        30.08         0.99 
TCGA-AB-2984 TCGA-AB-2986 TCGA-AB-2988 TCGA-AB-2990 TCGA-AB-2993 TCGA-AB-2994 
       38.01         6.97         0.99        15.02        25.02        59.11 
TCGA-AB-2998 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3011 
        1.02        15.91        51.98        61.97 

subtype1 subtype2 subtype3 
    0.99     0.92     0.92 
subtype1 subtype2 subtype3 
   94.06    75.09    61.97 
subtype1 subtype2 subtype3 
  16.080   10.995    9.500 
[1] "1.0 - 94.1 (16.1)" "0.9 - 75.1 (11.0)" "0.9 - 62.0 (9.5)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 33 41
  subtype2 24 33
  subtype3 27 21
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   41
  subtype2   24   33
  subtype3   27   21
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       33       24       27
  MALE         41       33       21

Clustering(3) Variable = MRNASEQ_CHIERARCHICAL
D3V1, survival
          sevent
clus2       0  1
  subtype1 19 33
  subtype2 41 64
subtype1 subtype2 
      52      105 
subtype1 subtype2 
      33       64 
$subtype1
TCGA-AB-2805 TCGA-AB-2811 TCGA-AB-2815 TCGA-AB-2816 TCGA-AB-2818 TCGA-AB-2824 
       18.94         7.99        26.99         8.05         9.96         0.99 
TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2828 TCGA-AB-2832 TCGA-AB-2833 TCGA-AB-2834 
        6.94        24.03        75.09        12.00        14.99         8.05 
TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2844 TCGA-AB-2846 TCGA-AB-2848 TCGA-AB-2851 
       55.00        17.00         3.98        46.09        14.96         7.96 
TCGA-AB-2856 TCGA-AB-2865 TCGA-AB-2866 TCGA-AB-2870 TCGA-AB-2873 TCGA-AB-2881 
        4.90         2.01         5.00         5.00         8.98        12.92 
TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2888 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2893 
       24.00        24.03        10.98         9.99        30.97         6.97 
TCGA-AB-2894 TCGA-AB-2900 TCGA-AB-2911 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2924 
        5.92         6.02        38.99        26.04        29.00         2.96 
TCGA-AB-2925 TCGA-AB-2934 TCGA-AB-2942 TCGA-AB-2954 TCGA-AB-2956 TCGA-AB-2963 
        7.96         0.92        21.07        49.05         6.02        53.95 
TCGA-AB-2965 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2971 TCGA-AB-2973 TCGA-AB-2977 
       11.01        34.03        37.05        26.04        20.02         0.99 
TCGA-AB-2981 TCGA-AB-2985 TCGA-AB-2987 TCGA-AB-3005 
       16.01         8.98         6.05        69.01 

$subtype2
TCGA-AB-2803 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2810 TCGA-AB-2812 
       26.04        31.04         5.92        94.06         1.02        12.03 
TCGA-AB-2813 TCGA-AB-2814 TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2821 TCGA-AB-2822 
        1.02        26.04         8.98        82.06        26.99        31.96 
TCGA-AB-2830 TCGA-AB-2838 TCGA-AB-2839 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
        9.04        12.00        15.98         0.92        46.06         7.07 
TCGA-AB-2845 TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2853 TCGA-AB-2854 TCGA-AB-2855 
        9.96        19.96        72.99         2.89        12.03         6.94 
TCGA-AB-2857 TCGA-AB-2858 TCGA-AB-2859 TCGA-AB-2860 TCGA-AB-2862 TCGA-AB-2863 
       10.06        18.94         9.96        14.01        47.01         1.02 
TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2872 TCGA-AB-2874 
        6.05         4.96         7.99         5.03        20.98        13.02 
TCGA-AB-2875 TCGA-AB-2876 TCGA-AB-2877 TCGA-AB-2878 TCGA-AB-2879 TCGA-AB-2880 
        6.97        40.08        20.98        12.00         8.05        13.94 
TCGA-AB-2882 TCGA-AB-2885 TCGA-AB-2886 TCGA-AB-2895 TCGA-AB-2896 TCGA-AB-2897 
       12.00         7.04         5.95         5.03         7.00         7.99 
TCGA-AB-2898 TCGA-AB-2899 TCGA-AB-2901 TCGA-AB-2904 TCGA-AB-2908 TCGA-AB-2909 
       12.92        22.06         1.91        16.96         1.02         0.99 
TCGA-AB-2912 TCGA-AB-2913 TCGA-AB-2917 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2927 
        9.01        39.98        39.98         2.01        12.03         2.93 
TCGA-AB-2928 TCGA-AB-2929 TCGA-AB-2933 TCGA-AB-2935 TCGA-AB-2936 TCGA-AB-2937 
        1.94         4.04         4.01         1.97         1.94         7.07 
TCGA-AB-2938 TCGA-AB-2939 TCGA-AB-2948 TCGA-AB-2949 TCGA-AB-2950 TCGA-AB-2952 
        9.96        14.96        19.07        22.98        10.06         1.02 
TCGA-AB-2955 TCGA-AB-2959 TCGA-AB-2964 TCGA-AB-2966 TCGA-AB-2970 TCGA-AB-2972 
       16.08        16.08        41.98        28.08        10.03         0.99 
TCGA-AB-2976 TCGA-AB-2978 TCGA-AB-2979 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2983 
       30.08        22.98        22.06        22.98         4.90        11.01 
TCGA-AB-2984 TCGA-AB-2986 TCGA-AB-2988 TCGA-AB-2990 TCGA-AB-2991 TCGA-AB-2992 
       38.01         6.97         0.99        15.02        60.03        56.09 
TCGA-AB-2993 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 TCGA-AB-2998 TCGA-AB-2999 
       25.02        59.11        50.99        51.98         1.02        57.01 
TCGA-AB-3000 TCGA-AB-3001 TCGA-AB-3002 TCGA-AB-3006 TCGA-AB-3007 TCGA-AB-3008 
       41.06        51.98        47.05        15.91        51.98        27.02 
TCGA-AB-3009 TCGA-AB-3011 TCGA-AB-3012 
       18.94        61.97        62.04 

subtype1 subtype2 
    0.92     0.92 
subtype1 subtype2 
   75.09    94.06 
subtype1 subtype2 
  11.505   12.920 
[1] "0.9 - 75.1 (11.5)" "0.9 - 94.1 (12.9)"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2"
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 29 32
  subtype2 55 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   32
  subtype2   55   63
        clus
vv       subtype1 subtype2
  FEMALE       29       55
  MALE         32       63

Clustering(4) Variable = MIRSEQ_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 21 54
  subtype2 18 18
  subtype3 23 29
subtype1 subtype2 subtype3 
      75       36       52 
subtype1 subtype2 subtype3 
      54       18       29 
$subtype1
TCGA-AB-2802 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2814 TCGA-AB-2816 
       12.00         1.02         7.99        12.03        26.04         8.05 
TCGA-AB-2818 TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2830 
        9.96        31.96         0.99         6.94        24.03         9.04 
TCGA-AB-2832 TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2844 
       12.00         8.05        55.00        17.00        15.98         3.98 
TCGA-AB-2848 TCGA-AB-2849 TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2855 TCGA-AB-2856 
       14.96        72.99         7.96         2.89         6.94         4.90 
TCGA-AB-2859 TCGA-AB-2863 TCGA-AB-2866 TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2873 
        9.96         1.02         5.00         7.99         5.03         8.98 
TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2883 TCGA-AB-2884 TCGA-AB-2893 TCGA-AB-2894 
       20.98         8.05        24.00        24.03         6.97         5.92 
TCGA-AB-2895 TCGA-AB-2899 TCGA-AB-2900 TCGA-AB-2904 TCGA-AB-2911 TCGA-AB-2913 
        5.03        22.06         6.02        16.96        38.99        39.98 
TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 TCGA-AB-2925 TCGA-AB-2933 
        2.01        12.03         1.02         2.96         7.96         4.01 
TCGA-AB-2934 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2956 TCGA-AB-2963 TCGA-AB-2965 
        0.92         7.99         1.02         6.02        53.95        11.01 
TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2969 TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 
       28.08        34.03        37.05        26.04         0.99        20.02 
TCGA-AB-2976 TCGA-AB-2977 TCGA-AB-2981 TCGA-AB-2984 TCGA-AB-2985 TCGA-AB-2986 
       30.08         0.99        16.01        38.01         8.98         6.97 
TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 TCGA-AB-2992 TCGA-AB-2993 
        6.05         0.99        12.00        15.02        56.09        25.02 
TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3011 
       69.01        15.91        61.97 

$subtype2
TCGA-AB-2803 TCGA-AB-2821 TCGA-AB-2838 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
       26.04        26.99        12.00         0.92        46.06         7.07 
TCGA-AB-2847 TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2865 TCGA-AB-2867 TCGA-AB-2868 
       19.96        10.06        14.01         2.01         6.05         4.96 
TCGA-AB-2872 TCGA-AB-2874 TCGA-AB-2878 TCGA-AB-2885 TCGA-AB-2888 TCGA-AB-2897 
       20.98        13.02        12.00         7.04        10.98         7.99 
TCGA-AB-2898 TCGA-AB-2917 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2939 TCGA-AB-2948 
       12.92        39.98         4.04         1.97        14.96        19.07 
TCGA-AB-2949 TCGA-AB-2952 TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2982 TCGA-AB-2991 
       22.98         1.02        22.98        22.98         4.90        60.03 
TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2999 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
       59.11        50.99        57.01        51.98        51.98        62.04 

$subtype3
TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2813 TCGA-AB-2815 
       18.94        31.04         5.92        94.06         1.02        26.99 
TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2828 TCGA-AB-2833 TCGA-AB-2845 TCGA-AB-2846 
        8.98        82.06        75.09        14.99         9.96        46.09 
TCGA-AB-2854 TCGA-AB-2858 TCGA-AB-2862 TCGA-AB-2870 TCGA-AB-2875 TCGA-AB-2876 
       12.03        18.94        47.01         5.00         6.97        40.08 
TCGA-AB-2880 TCGA-AB-2881 TCGA-AB-2882 TCGA-AB-2886 TCGA-AB-2889 TCGA-AB-2892 
       13.94        12.92        12.00         5.95         9.99        30.97 
TCGA-AB-2901 TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 
        1.91         1.02         0.99         9.01        26.04        29.00 
TCGA-AB-2926 TCGA-AB-2927 TCGA-AB-2928 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 
       14.99         2.93         1.94         1.94         7.07         9.96 
TCGA-AB-2942 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 
       21.07        10.06        49.05        16.08        19.99        16.08 
TCGA-AB-2964 TCGA-AB-2970 TCGA-AB-2979 TCGA-AB-2983 TCGA-AB-2996 TCGA-AB-2998 
       41.98        10.03        22.06        11.01        51.98         1.02 
TCGA-AB-3000 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       41.06        47.05        27.02        18.94 

subtype1 subtype2 subtype3 
    0.92     0.92     0.99 
subtype1 subtype2 subtype3 
   72.99    62.04    94.06 
subtype1 subtype2 subtype3 
   9.960   14.485   14.990 
[1] "0.9 - 73.0 (10.0)" "0.9 - 62.0 (14.5)" "1.0 - 94.1 (15.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 39 47
  subtype2 17 23
  subtype3 30 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   47
  subtype2   17   23
  subtype3   30   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       17       30
  MALE         47       23       31

Clustering(5) Variable = MIRSEQ_CHIERARCHICAL
D5V1, survival
          sevent
clus2       0  1
  subtype1 18 16
  subtype2 21 50
  subtype3 23 35
subtype1 subtype2 subtype3 
      34       71       58 
subtype1 subtype2 subtype3 
      16       50       35 
$subtype1
TCGA-AB-2803 TCGA-AB-2821 TCGA-AB-2838 TCGA-AB-2840 TCGA-AB-2841 TCGA-AB-2843 
       26.04        26.99        12.00         0.92        46.06         7.07 
TCGA-AB-2857 TCGA-AB-2860 TCGA-AB-2865 TCGA-AB-2867 TCGA-AB-2868 TCGA-AB-2872 
       10.06        14.01         2.01         6.05         4.96        20.98 
TCGA-AB-2874 TCGA-AB-2878 TCGA-AB-2885 TCGA-AB-2888 TCGA-AB-2897 TCGA-AB-2898 
       13.02        12.00         7.04        10.98         7.99        12.92 
TCGA-AB-2917 TCGA-AB-2929 TCGA-AB-2935 TCGA-AB-2939 TCGA-AB-2949 TCGA-AB-2952 
       39.98         4.04         1.97        14.96        22.98         1.02 
TCGA-AB-2978 TCGA-AB-2980 TCGA-AB-2991 TCGA-AB-2994 TCGA-AB-2995 TCGA-AB-2996 
       22.98        22.98        60.03        59.11        50.99        51.98 
TCGA-AB-2999 TCGA-AB-3001 TCGA-AB-3007 TCGA-AB-3012 
       57.01        51.98        51.98        62.04 

$subtype2
TCGA-AB-2802 TCGA-AB-2810 TCGA-AB-2811 TCGA-AB-2812 TCGA-AB-2816 TCGA-AB-2818 
       12.00         1.02         7.99        12.03         8.05         9.96 
TCGA-AB-2822 TCGA-AB-2824 TCGA-AB-2825 TCGA-AB-2826 TCGA-AB-2830 TCGA-AB-2832 
       31.96         0.99         6.94        24.03         9.04        12.00 
TCGA-AB-2834 TCGA-AB-2835 TCGA-AB-2836 TCGA-AB-2839 TCGA-AB-2844 TCGA-AB-2848 
        8.05        55.00        17.00        15.98         3.98        14.96 
TCGA-AB-2851 TCGA-AB-2853 TCGA-AB-2856 TCGA-AB-2859 TCGA-AB-2863 TCGA-AB-2866 
        7.96         2.89         4.90         9.96         1.02         5.00 
TCGA-AB-2869 TCGA-AB-2871 TCGA-AB-2873 TCGA-AB-2877 TCGA-AB-2879 TCGA-AB-2883 
        7.99         5.03         8.98        20.98         8.05        24.00 
TCGA-AB-2884 TCGA-AB-2893 TCGA-AB-2894 TCGA-AB-2895 TCGA-AB-2900 TCGA-AB-2904 
       24.03         6.97         5.92         5.03         6.02        16.96 
TCGA-AB-2911 TCGA-AB-2913 TCGA-AB-2919 TCGA-AB-2920 TCGA-AB-2923 TCGA-AB-2924 
       38.99        39.98         2.01        12.03         1.02         2.96 
TCGA-AB-2925 TCGA-AB-2928 TCGA-AB-2934 TCGA-AB-2945 TCGA-AB-2947 TCGA-AB-2956 
        7.96         1.94         0.92         7.99         1.02         6.02 
TCGA-AB-2963 TCGA-AB-2964 TCGA-AB-2965 TCGA-AB-2966 TCGA-AB-2967 TCGA-AB-2969 
       53.95        41.98        11.01        28.08        34.03        37.05 
TCGA-AB-2971 TCGA-AB-2972 TCGA-AB-2973 TCGA-AB-2976 TCGA-AB-2981 TCGA-AB-2984 
       26.04         0.99        20.02        30.08        16.01        38.01 
TCGA-AB-2985 TCGA-AB-2986 TCGA-AB-2987 TCGA-AB-2988 TCGA-AB-2989 TCGA-AB-2990 
        8.98         6.97         6.05         0.99        12.00        15.02 
TCGA-AB-2992 TCGA-AB-2993 TCGA-AB-3005 TCGA-AB-3006 TCGA-AB-3011 
       56.09        25.02        69.01        15.91        61.97 

$subtype3
TCGA-AB-2805 TCGA-AB-2806 TCGA-AB-2807 TCGA-AB-2808 TCGA-AB-2813 TCGA-AB-2814 
       18.94        31.04         5.92        94.06         1.02        26.04 
TCGA-AB-2815 TCGA-AB-2817 TCGA-AB-2819 TCGA-AB-2828 TCGA-AB-2833 TCGA-AB-2845 
       26.99         8.98        82.06        75.09        14.99         9.96 
TCGA-AB-2846 TCGA-AB-2847 TCGA-AB-2849 TCGA-AB-2854 TCGA-AB-2855 TCGA-AB-2858 
       46.09        19.96        72.99        12.03         6.94        18.94 
TCGA-AB-2862 TCGA-AB-2870 TCGA-AB-2875 TCGA-AB-2876 TCGA-AB-2880 TCGA-AB-2881 
       47.01         5.00         6.97        40.08        13.94        12.92 
TCGA-AB-2882 TCGA-AB-2886 TCGA-AB-2889 TCGA-AB-2892 TCGA-AB-2899 TCGA-AB-2901 
       12.00         5.95         9.99        30.97        22.06         1.91 
TCGA-AB-2908 TCGA-AB-2909 TCGA-AB-2912 TCGA-AB-2914 TCGA-AB-2916 TCGA-AB-2926 
        1.02         0.99         9.01        26.04        29.00        14.99 
TCGA-AB-2927 TCGA-AB-2933 TCGA-AB-2936 TCGA-AB-2937 TCGA-AB-2938 TCGA-AB-2942 
        2.93         4.01         1.94         7.07         9.96        21.07 
TCGA-AB-2948 TCGA-AB-2950 TCGA-AB-2954 TCGA-AB-2955 TCGA-AB-2957 TCGA-AB-2959 
       19.07        10.06        49.05        16.08        19.99        16.08 
TCGA-AB-2970 TCGA-AB-2977 TCGA-AB-2979 TCGA-AB-2982 TCGA-AB-2983 TCGA-AB-2998 
       10.03         0.99        22.06         4.90        11.01         1.02 
TCGA-AB-3000 TCGA-AB-3002 TCGA-AB-3008 TCGA-AB-3009 
       41.06        47.05        27.02        18.94 

subtype1 subtype2 subtype3 
    0.92     0.92     0.99 
subtype1 subtype2 subtype3 
   62.04    69.01    94.06 
subtype1 subtype2 subtype3 
  14.485    9.960   14.990 
[1] "0.9 - 62.0 (14.5)" "0.9 - 69.0 (10.0)" "1.0 - 94.1 (15.0)"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
  [1] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 16 22
  subtype2 40 42
  subtype3 30 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   22
  subtype2   40   42
  subtype3   30   37
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       16       40       30
  MALE         22       42       37
           V1.D              V2              V3 
"Time to Death"           "AGE"        "GENDER" 
> q(save="no")
